To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GENIE3")

In most cases, you don't need to download the package archive at all.

GENIE3

DOI: 10.18129/B9.bioc.GENIE3    

This is the development version of GENIE3; to use it, please install the devel version of Bioconductor.

GEne Network Inference with Ensemble of trees

Bioconductor version: Development (3.6)

This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

Author: Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts

Maintainer: Van Anh Huynh-Thu <vahuynh at ulg.ac.be>

Citation (from within R, enter citation("GENIE3")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GENIE3")

Documentation

HTML R Script GENIE3
PDF   Reference Manual
Text   NEWS

Details

biocViews DecisionTree, GeneExpression, GraphAndNetwork, Network, NetworkInference, Regression, Software, SystemsBiology
Version 0.99.7
In Bioconductor since BioC 3.6 (R-3.4)
License GPL (>= 2)
Depends
Imports stats, reshape2
LinkingTo
Suggests knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GENIE3_0.99.7.tar.gz
Windows Binary GENIE3_0.99.7.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GENIE3_0.99.7.tgz
Source Repository git clone https://git.bioconductor.org/packages/GENIE3
Package Short Url http://bioconductor.org/packages/GENIE3/
Package Downloads Report Download Stats

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