DExMA

DOI: 10.18129/B9.bioc.DExMA    

This is the development version of DExMA; for the stable release version, see DExMA.

Differential Expression Meta-Analysis

Bioconductor version: Development (3.15)

performing all the steps of gene expression meta-analysis without eliminating those genes that are presented in at least two datasets. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO data sets and show graphical representations of the results.

Author: Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com>, Pedro Carmona-Sáez <juanantoniovillatorogarcia at gmail.com>

Maintainer: Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com>

Citation (from within R, enter citation("DExMA")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DExMA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, QualityControl, Software, StatisticalMethod
Version 1.3.0
In Bioconductor since BioC 3.13 (R-4.1) (< 6 months)
License GPL-2
Depends R (>= 4.1), DExMAdata
Imports Biobase, GEOquery, impute, limma, pheatmap, plyr, scales, snpStats, sva, swamp, stats, methods, utils
LinkingTo
Suggests BiocStyle, qpdf, BiocGenerics, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/DExMA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DExMA
Package Short Url https://bioconductor.org/packages/DExMA/
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