ChIPsim

Simulation of ChIP-seq experiments

Bioconductor version: Development (3.0)

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at well.ox.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChIPsim")

To cite this package in a publication, start R and enter:

    citation("ChIPsim")

Documentation

PDF R Script Simulating ChIP-seq experiments
PDF   Reference Manual

Details

biocViews ChIPSeq, Infrastructure, Software
Version 1.19.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL (>= 2)
Depends Biostrings(>= 2.29.2)
Imports IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils
Suggests actuar, zoo
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source ChIPsim_1.19.0.tar.gz
Windows Binary ChIPsim_1.19.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ChIPsim_1.19.0.tgz
Mac OS X 10.9 (Mavericks)
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