CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.

Bioconductor version: Development (3.0)

CNVrd2 uses next-generation sequencing data to measure human gene copy number for multiple samples, indentify SNPs tagging copy number variants and detect copy number polymorphic genomic regions.

Author: Hoang Tan Nguyen, Tony R Merriman and MA Black

Maintainer: Hoang Tan Nguyen <hoangtannguyenvn at>

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biocViews CNV, High Throughput Sequencing, SNP., Software
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends R (>= 3.0.0), DNAcopy, methods, Rsamtools, VariantAnnotation, parallel, rjags, ggplot2, gridExtra
Imports IRanges
Suggests knitr
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source CNVrd2_1.3.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CNVrd2_1.3.0.tgz
Mac OS X 10.9 (Mavericks)
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