BioTIP

This is the development version of BioTIP; for the stable release version, see BioTIP.

BioTIP: An R package for characterization of Biological Tipping-Point

Bioconductor version: Development (3.22)

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Felix Yu <felixy at uchicago.edu> and X Holly Yang <xyang2 at uchicago.edu>

Citation (from within R, enter citation("BioTIP")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioTIP")

BioTIP- an R package for characterization of Biological Tipping-Point	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, RNASeq, Sequencing, Software, Transcription
Version	1.23.1
In Bioconductor since	BioC 3.10 (R-3.6) (6 years)
License	GPL-2
Depends	R (>= 3.6)
Imports	igraph, cluster, psych, stringr, GenomicRanges, MASS, scran, methods, stats, utils, grDevices, graphics, foreach, doParallel
System Requirements
URL	https://github.com/xyang2uchicago/BioTIP

Suggests	knitr, markdown, base, rmarkdown, ggplot2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioTIP_1.23.1.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)	BioTIP_1.23.1.tgz
macOS Binary (arm64)	BioTIP_1.23.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BioTIP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioTIP
Bioc Package Browser	https://code.bioconductor.org/browse/BioTIP/
Package Short Url	https://bioconductor.org/packages/BioTIP/
Package Downloads Report	Download Stats