DOI: 10.18129/B9.bioc.ADAMgui    

This is the development version of ADAMgui; for the stable release version, see ADAMgui.

Activity and Diversity Analysis Module Graphical User Interface

Bioconductor version: Development (3.15)

ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.

Author: Giordano Bruno Sanches Seco <giordano.bruno at>, André Luiz Molan <jose.luiz at>, Agnes Takeda <giordano.bruno at>, Jose Rybarczyk Filho <jose.luiz at>

Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at>

Citation (from within R, enter citation("ADAMgui")):


To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews GeneSetEnrichment, KEGG, Pathways, Software
Version 1.11.0
In Bioconductor since BioC 3.9 (R-3.6) (2.5 years)
License GPL (>= 2)
Depends R (>= 3.6), stats, utils, methods, ADAM
Imports GO.db (>= 3.5.0), dplyr (>= 0.7.6), shiny (>= 1.1.0), stringr (>= 1.3.1), stringi (>= 1.2.4), varhandle (>= 2.0.3), ggplot2 (>= 3.0.0), ggrepel (>= 0.8.0), ggpubr (>= 0.1.8), ggsignif (>= 0.4.0), reshape2 (>= 1.4.3), RColorBrewer (>= 1.1-2), colorRamps (>= 2.3), DT (>= 0.4), data.table (>= 1.11.4), gridExtra (>= 2.3), shinyjs (>= 1.0), knitr, testthat
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