crlmm

Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays

Bioconductor version: 3.23 · Package version: 1.70.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms.

DOI: 10.18129/B9.bioc.crlmm

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("crlmm")

Details

Maintainer	Benilton S Carvalho <benilton@unicamp.br>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
Author	Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry
License	Artistic-2.0
Source branch	RELEASE_3_23
Build report	Bioconductor build system, r-universe
biocViews	CopyNumberVariation, Microarray, Preprocessing, SNP, Software
Package Short Url	https://bioconductor.org/packages/crlmm/

Citation

From within R, enter citation("crlmm"):

Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry. crlmm: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays. doi:10.18129/B9.bioc.crlmm, R package version 1.70.0, https://bioconductor.org/packages/crlmm.

Generated from the package metadata; it may differ from the package's own citation.