crlmm

Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.

Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 6.0.

Author	Rafael A Irizarry, Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Maintainer	Benilton S Carvalho , Robert Scharpf , Matt Ritchie

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("crlmm")

crlmm Vignette - Copy Number	PDF	R Script
crlmm Vignette - Downstream Analysis	PDF	R Script
crlmm Vignette - Genotyping	PDF	R Script
crlmmIllumina.pdf	PDF
Reference Manual

biocViews	Microarray , Preprocessing , SNP , Bioinformatics , CopyNumberVariants
Depends	methods , Biobase , R
Imports	affyio , preprocessCore , utils , stats , genefilter , splines , mvtnorm , oligoClasses , ellipse , methods , SNPchip
Suggests	hapmapsnp5 , hapmapsnp6 , genomewidesnp5Crlmm , genomewidesnp6Crlmm , snpMatrix , VanillaICE , GGdata
System Requirements
License	Artistic-2.0
URL
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