cfToolsData
ExperimentHub data for the cfTools package
Bioconductor version: Release (3.20)
The cfToolsData package supplies the data for the cfTools package. It contains two pre-trained deep neural network (DNN) models for the cfSort function. Additionally, it includes the shape parameters of beta distribution characterizing methylation markers associated with four tumor types for the CancerDetector function, as well as the parameters characterizing methylation markers specific to 29 primary human tissue types for the cfDeconvolve function.
Author: Ran Hu [aut, cre] 
, Shuo Li [aut] , Xianghong Jasmine Zhou [aut] , Wenyuan Li [aut]
Maintainer: Ran Hu <huran at ucla.edu>
citation("cfToolsData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cfToolsData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cfToolsData")| cfToolsData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CancerData, DiseaseModel, ExperimentData, ExperimentHub, ReproducibleResearch, Tissue |
| Version | 1.4.0 |
| License | file LICENSE |
| Depends | R (>= 4.3.0) |
| Imports | utils, ExperimentHub |
| System Requirements | |
| URL | https://github.com/jasminezhoulab/cfToolsData |
| Bug Reports | https://github.com/jasminezhoulab/cfToolsData/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, ExperimentHubData, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | cfTools |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cfToolsData_1.4.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/cfToolsData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cfToolsData |
| Package Short Url | https://bioconductor.org/packages/cfToolsData/ |
| Package Downloads Report | Download Stats |