biomaRt
Interface to BioMart databases (i.e. Ensembl)
Bioconductor version: Release (3.20)
In recent years a wealth of biological data has become available in public data repositories. Easy access to these valuable data resources and firm integration with data analysis is needed for comprehensive bioinformatics data analysis. biomaRt provides an interface to a growing collection of databases implementing the BioMart software suite (
Author: Steffen Durinck [aut], Wolfgang Huber [aut], Sean Davis [ctb], Francois Pepin [ctb], Vince S Buffalo [ctb], Mike Smith [ctb, cre]
Maintainer: Mike Smith <grimbough at gmail.com>
citation("biomaRt")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("biomaRt")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biomaRt")
Accessing Ensembl annotation with biomaRt | HTML | R Script |
Using a BioMart other than Ensembl | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, Software |
Version | 2.62.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
License | Artistic-2.0 |
Depends | methods |
Imports | utils, AnnotationDbi, progress, stringr, httr2, digest, BiocFileCache, rappdirs, xml2, curl |
System Requirements | |
URL | https://github.com/grimbough/biomaRt |
Bug Reports | https://github.com/grimbough/biomaRt/issues |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | biomaRt_2.62.0.tar.gz |
Windows Binary (x86_64) | biomaRt_2.62.0.zip (64-bit only) |
macOS Binary (x86_64) | biomaRt_2.62.0.tgz |
macOS Binary (arm64) | biomaRt_2.61.3.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/biomaRt |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biomaRt |
Bioc Package Browser | https://code.bioconductor.org/browse/biomaRt/ |
Package Short Url | https://bioconductor.org/packages/biomaRt/ |
Package Downloads Report | Download Stats |