UniProt.ws
R Interface to UniProt Web Services
Bioconductor version: Release (3.20)
The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.
Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
citation("UniProt.ws")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("UniProt.ws")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("UniProt.ws")
UniProt.ws: A package for retrieving data from the UniProt web service | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, BioCarta, GO, Infrastructure, KEGG, Software |
Version | 2.46.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
License | Artistic-2.0 |
Depends | BiocGenerics, methods, RSQLite, utils |
Imports | AnnotationDbi, BiocFileCache, BiocBaseUtils, httr, httpcache, jsonlite, progress, rjsoncons |
System Requirements | |
URL | https://github.com/Bioconductor/UniProt.ws |
Bug Reports | https://github.com/Bioconductor/UniProt.ws/issues |
See More
Suggests | BiocStyle, knitr, rmarkdown, RUnit |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | dagLogo, drugTargetInteractions, ginmappeR, immunogenViewer |
Suggests Me | autonomics, cleaver, qPLEXanalyzer |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | UniProt.ws_2.46.0.tar.gz |
Windows Binary (x86_64) | UniProt.ws_2.46.0.zip |
macOS Binary (x86_64) | |
macOS Binary (arm64) | UniProt.ws_2.45.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/UniProt.ws |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/UniProt.ws |
Bioc Package Browser | https://code.bioconductor.org/browse/UniProt.ws/ |
Package Short Url | https://bioconductor.org/packages/UniProt.ws/ |
Package Downloads Report | Download Stats |