TargetSearch

A package for the analysis of GC-MS metabolite profiling data


Bioconductor version: Release (3.20)

This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.

Author: Alvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut]

Maintainer: Alvaro Cuadros-Inostroza <acuadros+bioc at gmail.com>

Citation (from within R, enter citation("TargetSearch")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TargetSearch")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TargetSearch")
RI correction extra PDF R Script
The TargetSearch Package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DecisionTree, ImmunoOncology, MassSpectrometry, Preprocessing, Software
Version 2.8.0
In Bioconductor since BioC 2.4 (R-2.9) (15.5 years)
License GPL (>= 2)
Depends
Imports graphics, grDevices, methods, ncdf4, stats, utils, assertthat
System Requirements
URL https://github.com/acinostroza/TargetSearch
Bug Reports https://github.com/acinostroza/TargetSearch/issues
See More
Suggests TargetSearchData, BiocStyle, knitr, tinytest
Linking To
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TargetSearch_2.8.0.tar.gz
Windows Binary (x86_64) TargetSearch_2.8.0.zip
macOS Binary (x86_64) TargetSearch_2.8.0.tgz
macOS Binary (arm64) TargetSearch_2.7.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/TargetSearch
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TargetSearch
Bioc Package Browser https://code.bioconductor.org/browse/TargetSearch/
Package Short Url https://bioconductor.org/packages/TargetSearch/
Package Downloads Report Download Stats