ResidualMatrix
Creating a DelayedMatrix of Regression Residuals
Bioconductor version: Release (3.20)
Provides delayed computation of a matrix of residuals after fitting a linear model to each column of an input matrix. Also supports partial computation of residuals where selected factors are to be preserved in the output matrix. Implements a number of efficient methods for operating on the delayed matrix of residuals, most notably matrix multiplication and calculation of row/column sums or means.
Author: Aaron Lun [aut, cre, cph]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("ResidualMatrix")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ResidualMatrix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ResidualMatrix")
Using the ResidualMatrix | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | BatchEffect, DataRepresentation, ExperimentalDesign, Regression, Software |
Version | 1.16.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
License | GPL-3 |
Depends | |
Imports | methods, Matrix, S4Vectors, DelayedArray |
System Requirements | |
URL | https://github.com/LTLA/ResidualMatrix |
Bug Reports | https://github.com/LTLA/ResidualMatrix/issues |
See More
Suggests | testthat, BiocStyle, knitr, rmarkdown, BiocSingular |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | batchelor |
Suggests Me | BiocSingular, alabaster.matrix, chihaya, scran |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ResidualMatrix_1.16.0.tar.gz |
Windows Binary (x86_64) | ResidualMatrix_1.16.0.zip (64-bit only) |
macOS Binary (x86_64) | ResidualMatrix_1.16.0.tgz |
macOS Binary (arm64) | ResidualMatrix_1.15.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ResidualMatrix |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ResidualMatrix |
Bioc Package Browser | https://code.bioconductor.org/browse/ResidualMatrix/ |
Package Short Url | https://bioconductor.org/packages/ResidualMatrix/ |
Package Downloads Report | Download Stats |