RImmPort
This is the released version of RImmPort; for the devel version, see RImmPort.
RImmPort: Enabling Ready-for-analysis Immunology Research Data
Bioconductor version: Release (3.23)
The RImmPort package simplifies access to ImmPort data for analysis in the R environment. It provides a standards-based interface to the ImmPort study data that is in a proprietary format.
Author: Ravi Shankar <rshankar at stanford.edu>
Maintainer: Zicheng Hu <Zicheng.Hu at ucsf.edu>, Ravi Shankar <rshankar at stanford.edu>
citation("RImmPort")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RImmPort")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RImmPort")| RImmPort: Enabling ready-for-analysis immunology research data | R Script | |
| RImmPort: Quick Start Guide | R Script | |
| Reference Manual |
Details
| biocViews | BiomedicalInformatics, DataImport, DataRepresentation, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (10.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | plyr, dplyr, DBI, data.table, reshape2, methods, sqldf, tools, utils, RSQLite |
| System Requirements | |
| URL | http://bioconductor.org/packages/RImmPort/ |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RImmPort_1.40.0.tar.gz |
| Windows Binary (x86_64) | RImmPort_1.40.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | RImmPort_1.40.0.tgz |
| macOS Binary (sonoma-arm64) | RImmPort_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RImmPort |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RImmPort |
| Bioc Package Browser | https://code.bioconductor.org/browse/RImmPort/ |
| Package Short Url | https://bioconductor.org/packages/RImmPort/ |
| Package Downloads Report | Download Stats |