RBioFormats
R interface to Bio-Formats
Bioconductor version: Release (3.20)
An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.
Author: Andrzej Oleś [aut, cre] , John Lee [ctb]
Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>
Citation (from within R, enter
citation("RBioFormats")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RBioFormats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RBioFormats")
RBioFormats: an R interface to the Bio-Formats library | HTML | R Script |
Reference Manual |
Details
biocViews | DataImport, Software |
Version | 1.6.0 |
In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
License | GPL-3 |
Depends | |
Imports | EBImage, methods, rJava (>= 0.9-6), S4Vectors, stats |
System Requirements | Java (>= 1.7) |
URL | https://github.com/aoles/RBioFormats |
Bug Reports | https://github.com/aoles/RBioFormats/issues |
See More
Suggests | BiocStyle, knitr, testthat, xml2 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | SpatialOmicsOverlay |
Suggests Me | SpatialFeatureExperiment |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | RBioFormats_1.6.0.tar.gz |
Windows Binary (x86_64) | RBioFormats_1.6.0.zip (64-bit only) |
macOS Binary (x86_64) | RBioFormats_1.6.0.tgz |
macOS Binary (arm64) | RBioFormats_1.5.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RBioFormats |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RBioFormats |
Bioc Package Browser | https://code.bioconductor.org/browse/RBioFormats/ |
Package Short Url | https://bioconductor.org/packages/RBioFormats/ |
Package Downloads Report | Download Stats |