PAIRADISE
PAIRADISE: Paired analysis of differential isoform expression
Bioconductor version: Release (3.20)
This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.
Author: Levon Demirdjian, Ying Nian Wu, Yi Xing
Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>, Levon Demirdjian <levondem at ucla.edu>
Citation (from within R, enter
citation("PAIRADISE")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PAIRADISE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PAIRADISE")
PAIRADISE | HTML | R Script |
Reference Manual | ||
LICENSE | Text |
Details
biocViews | AlternativeSplicing, DifferentialExpression, ImmunoOncology, RNASeq, Software, StatisticalMethod |
Version | 1.22.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.6), nloptr |
Imports | SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel |
System Requirements | |
URL |
See More
Suggests | testthat, knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | PAIRADISE_1.22.0.tar.gz |
Windows Binary (x86_64) | PAIRADISE_1.22.0.zip |
macOS Binary (x86_64) | PAIRADISE_1.22.0.tgz |
macOS Binary (arm64) | PAIRADISE_1.21.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/PAIRADISE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PAIRADISE |
Bioc Package Browser | https://code.bioconductor.org/browse/PAIRADISE/ |
Package Short Url | https://bioconductor.org/packages/PAIRADISE/ |
Package Downloads Report | Download Stats |