Preprocessing data from genomic experiments

  1. Overview, data structures, and principles (W. Huber, R. A. Irizarry, R. Gentleman) (R)
  2. Preprocessing Affymetrix(TM) data (B. M. Bolstad, R. A. Irizarry, L. Gautier, Z. Wu) (R)
  3. Quality control of Affymetrix(TM) data (B. M. Bolstad, F. Collin, J. Brettschneider, K. Simpson, L. Cope, R. Irizarry, T. P. Speed) (R)
  4. cDNA platforms (Y. H. Yang and A. C. Paquet) (R)
  5. Cell-based assays (Wolfgang Huber and Florian Hahne) (R)
  6. Proteomics spectra (X. Li, R. Gentleman, X. Lu, Q. Shi, J.D. Iglehart, L. Harris and A. Miron) (R)
Fred Hutchinson Cancer Research Center