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GIT Logs

This is a list of recent commits to git.bioconductor.org, the master(development) branch of the Bioconductor GIT repository.

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Package: ChIPSeqSpike
Commit: 8c64f787f974bcdfba4f9a515a21dec4772a8ce0
Author: Lori Shepherd <lori.shepherd@roswellpark.org>
Date: 2021-03-08 13:20:55 -0500
Commit message:

 User requested deprecation
 
Package: methyAnalysis
Commit: cd14e6660a9bcc573f7003ed909f5c54c7351d40
Author: Lori Shepherd <lori.shepherd@roswellpark.org>
Date: 2021-03-08 13:05:45 -0500
Commit message:

 Deprecate

 - unresponsive
 
Package: iBBiG
Commit: 9c168270a11b84483c025f6c91b6077e6b59d5e6
Author: Martin Morgan <Martin.Morgan@RoswellPark.org>
Date: 2021-03-08 12:45:29 -0500
Commit message:

 add Title: to DESCRIPTION

- oops, somehow deleted on last commit
 
Package: netboost
Commit: c016c637a76b2102d4446e0cbba2d4cd8821fb04
Author: Pascal Schlosser <pascal.schlosser@uniklinik-freiburg.de>
Date: 2021-03-08 18:40:12 +0100
Commit message:

 non-parametric extension
 
Package: QFeatures
Commit: 2a7697739a91133f537afc0e7a51ad8aea8317f3
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2021-03-04 22:14:09 +0100
Commit message:

 Update DESCRIPTION 
Package: QFeatures
Commit: d122a741d9162df99fa5e81928ede780c025d5cb
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2021-03-04 22:13:46 +0100
Commit message:

 Update check-bioc.yml 
Package: QFeatures
Commit: 3eb7307bfe2ceaaed825bb148ab0910ec4fd8ac6
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2021-03-04 21:45:05 +0100
Commit message:

 Update check-bioc.yml 
Package: QFeatures
Commit: 8e0a31c5421f47cccf35eafc0c9c263fb24c4792
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2021-03-04 19:53:31 +0100
Commit message:

 Update check-bioc.yml 
Package: QFeatures
Commit: d707ee2d476152d834b4c472ed8b5fd4b06eecfb
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2021-02-26 18:45:27 +0100
Commit message:

 Merge pull request #129 from cvanderaa/master

refactor: adapted subsetting to behave as MultiAssayExperiment (issue #128) 
Package: QFeatures
Commit: e4ca451c3813188fc02e969d9c3c8396bad6622b
Author: Christophe Vanderaa <vanderaa.christophe@gmail.com>
Date: 2021-02-23 14:02:31 +0100
Commit message:

 refactor: adapted subsetting to behave as MultiAssayExperiment
 
Package: QFeatures
Commit: ad9e6383ae94db40e8f451a3ebcc593925003a7e
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2021-02-23 09:38:28 +0100
Commit message:

 Merge pull request #126 from cvanderaa/master

refactor: optimized 'infIsNA' and 'zeroIsNA' 
Package: QFeatures
Commit: aa26074bf244f3d4628f2cd6e7e7abcc91e1bf77
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2021-02-23 08:57:03 +0100
Commit message:

 Merge pull request #127 from cvanderaa/issue125bis

fix: avoided warnings thrown by 'MultiAssayExperiment' 
Package: QFeatures
Commit: d3afcadb590cf2b14f10ace0fdde07b92c0cf98e
Author: Christophe Vanderaa <vanderaa.christophe@gmail.com>
Date: 2021-02-22 20:06:56 +0100
Commit message:

 test: fixed the tests to pass R CMD checks
 
Package: QFeatures
Commit: 9fe5ebfdba30459ca6f5627989200b17d3cd423c
Author: Christophe Vanderaa <vanderaa.christophe@gmail.com>
Date: 2021-02-22 17:16:11 +0100
Commit message:

 tests: improved unit tests for infIsNA and zeroIsNA (cf #126 )
 
Package: QFeatures
Commit: 3374467a7cceb9d2f8ddc44f9634de8eb19d722d
Author: Christophe Vanderaa <vanderaa.christophe@gmail.com>
Date: 2021-02-22 11:29:07 +0100
Commit message:

 refactor: optimized 'infIsNA' and 'zeroIsNA'
 
Package: QFeatures
Commit: 14042af962fe0da9cdcbfee001a9f195328053a1
Author: Christophe Vanderaa <vanderaa.christophe@gmail.com>
Date: 2021-02-22 11:27:57 +0100
Commit message:

 fix: avoided warnings thrown by 'MultiAssayExperiment'
 
Package: QFeatures
Commit: eb3d234e18e2695257047c9992cb9d961ff515ae
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2021-01-15 17:56:00 +0100
Commit message:

 docs: link to WSBIM2122 chap 8
 
Package: QFeatures
Commit: d5914ea00185cd02cf35e2bbc446476022979eda
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2021-01-15 16:48:46 +0100
Commit message:

 fix: untabify vignette
 
Package: QFeatures
Commit: e5e8afa27d65b22bd0b6f251d7493485ac74080b
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2021-01-15 15:59:24 +0100
Commit message:

 ci: untabify yml file
 
Package: QFeatures
Commit: 854618c53f8b5d5fe51cb52dbaa2e1123879f67d
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2021-01-15 15:53:47 +0100
Commit message:

 ci: install magick dep
 
Package: QFeatures
Commit: 44978c86547077b3024a7ae4a0d0f30f82153992
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2021-01-15 14:51:26 +0100
Commit message:

 fix conflict
 
Package: QFeatures
Commit: 1e3091688570d746723694f5940b34743deb7df1
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2021-01-15 14:31:46 +0100
Commit message:

 docs: upate normalize() and logTransform() in vignette and reference QFeaturesWorkshop2020 workshop
 
Package: QFeatures
Commit: 6b63ac353b598e8e5e31364dd4eb390918ed28e4
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-27 13:04:43 +0100
Commit message:

 doc: use quantile norm
 
Package: QFeatures
Commit: e508fd70af8611d372ed86f2a04ee2b2ac1c729c
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2020-12-27 13:00:12 +0100
Commit message:

 Fix: use QFeatures workflow link (was Spectra) 
Package: QFeatures
Commit: 35d9b2b703aaa65a4ce9322d0abd4415b09747eb
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-27 11:52:16 +0100
Commit message:

 only run action using bioc docker on linux
 
Package: QFeatures
Commit: e10b15dbd8963a6033bcc0a07113f8f27134f2b4
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 22:45:40 +0100
Commit message:

 use master branch
 
Package: QFeatures
Commit: af602f5b0fd65990f87b8d40bbe3dbf218fcac3f
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 22:30:48 +0100
Commit message:

 change to push
 
Package: QFeatures
Commit: 8976bcd606b705fcd164cdb10f07b625c974954c
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 22:27:16 +0100
Commit message:

 use release 3.12
 
Package: QFeatures
Commit: 5ad8b76092567b4f08fe943e6daaa4e88720c637
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 22:24:42 +0100
Commit message:

 set biocversion to 3.12
 
Package: QFeatures
Commit: 1ccca2c6e80db33832051c3b9965d7238ebdaef2
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 22:07:45 +0100
Commit message:

 fix syntax
 
Package: QFeatures
Commit: 83c010a58cde5ff55504acdad63d72b2377db171
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 22:06:01 +0100
Commit message:

 use macOS with r 4.0
 
Package: QFeatures
Commit: 44ebeec2d3bdea8beef27fa8e53b2ba3c1864393
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 21:53:06 +0100
Commit message:

 just use ubuntu-latest again
 
Package: QFeatures
Commit: ca78251b13efc05aca86528df6d5539491ee6179
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 21:39:44 +0100
Commit message:

 fix syntax error
 
Package: QFeatures
Commit: 06e57587488d3d15358e3590dee6aeef72de316f
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 21:38:44 +0100
Commit message:

 use macOS-latest with r patched
 
Package: QFeatures
Commit: 9562b3f5148d59d60ed707a5e3073abb0ee1e816
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 21:25:52 +0100
Commit message:

 try again macOS-latest
 
Package: QFeatures
Commit: 050cc4000117d5228638ace90239dffe8d95d3c8
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2020-12-26 21:12:49 +0100
Commit message:

 matrix with ubuntu 16.04 
Package: QFeatures
Commit: 9fc2569c847a2ccd802b3d56392864faaabfaf06
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 20:59:09 +0100
Commit message:

 comment matrix
 
Package: QFeatures
Commit: e80575e1e07707eff5c27bfc64403db7956832e6
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 20:42:25 +0100
Commit message:

 ci: redefine matrix
 
Package: QFeatures
Commit: 98e2eec8bd60b6b3562628203cbeddcc53b5c87d
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 20:15:47 +0100
Commit message:

 ci: install libgit2 and use osx
 
Package: QFeatures
Commit: 8a9f451b560603e7fd935a801a1ad940cbe300ef
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2020-12-26 20:10:34 +0100
Commit message:

 Update check-bioc.yml 
Package: QFeatures
Commit: e64359f2cd3b1a74bbd05e7c78d5dd1cd18e091a
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2020-12-26 20:07:56 +0100
Commit message:

 Update check-bioc.yml

remove win and osx 
Package: QFeatures
Commit: d4497ccfb8d3b17d1ec18cb4c42de47e95fd4dd7
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 15:53:25 +0100
Commit message:

 ci: manuel preprecessCore installation
 
Package: QFeatures
Commit: 08928e81738e5e283007ad9e3bc41743eff13b6f
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 13:43:33 +0100
Commit message:

 fix: temporarily use median-norm
 
Package: QFeatures
Commit: 56ed6d6709e1161fa0230f1ca3b19aed67a98b6d
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-12-26 12:34:05 +0100
Commit message:

 new gh devel version
 
Package: easyreporting
Commit: 6c40feb1f96806fa658e974322d83b391c3194a9
Author: dario righelli <dario.righelli@gmail.com>
Date: 2021-03-08 17:57:20 +0100
Commit message:

 Merge pull request #1 from drighelli/devel_R1

Devel r1 
Package: easyreporting
Commit: 5acb9a09efb54f63fd6ad90fed2419b56947b75b
Author: Dario <dario.righelli@gmail.com>
Date: 2021-03-08 17:56:21 +0100
Commit message:

 v 1.3.2
 
Package: easyreporting
Commit: 4a189140210bc08cfbe321de2b3ddb46eeae753f
Author: Dario <dario.righelli@gmail.com>
Date: 2021-03-01 18:22:23 +0100
Commit message:

 fixing error in utils parseCode
 
Package: easyreporting
Commit: c084b4270b466250d4548073c34e6dd63bccb1b2
Author: Dario <dario.righelli@gmail.com>
Date: 2021-03-01 17:17:39 +0100
Commit message:

 bumping version
 
Package: easyreporting
Commit: 47878e8b5b47c99e291915736f28fc1f90cddd42
Author: Dario <dario.righelli@gmail.com>
Date: 2021-03-01 17:17:28 +0100
Commit message:

 revision 1
 
Package: easyreporting
Commit: 17ba4c42711620d175e59026822ded6101ed7c31
Author: Dario <dario.righelli@gmail.com>
Date: 2021-02-19 15:29:01 +0100
Commit message:

 adding new options and multiple authors handling
 
Package: easyreporting
Commit: c6292be4fef4bd951cf8d320385978230158f73a
Author: Dario <dario.righelli@gmail.com>
Date: 2021-02-19 10:56:38 +0100
Commit message:

 volcano server
 
Package: ExpressionView
Commit: 2797762d931a88da774aefe33cf17fc79b5c0d15
Author: Lori Shepherd <lori.shepherd@roswellpark.org>
Date: 2021-03-08 11:51:16 -0500
Commit message:

 Deprecation

 - unresponsive
 
Package: eisa
Commit: 270feaebcb33a1072dd07b86f0ddcc2593cbe64e
Author: Lori Shepherd <lori.shepherd@roswellpark.org>
Date: 2021-03-08 11:48:49 -0500
Commit message:

 Deprecate

 - unresponsive
 
Package: CancerMutationAnalysis
Commit: 718d3876715953e323b93bc78ff128fd1a785aea
Author: Lori Shepherd <lori.shepherd@roswellpark.org>
Date: 2021-03-08 11:45:29 -0500
Commit message:

 Deprecate

 - unresponsive
 
Package: IntramiRExploreR
Commit: 522620e5727157bab7c049a94189a1097c8b36a5
Author: Lori Shepherd <lori.shepherd@roswellpark.org>
Date: 2021-03-08 11:38:54 -0500
Commit message:

 Deprecate

  - unresponsive
 
Package: dorothea
Commit: 1c1902d335a417db85a6d32c56c1037dc42a8ab0
Author: Christian Holland <cholland2408@gmail.com>
Date: 2021-03-08 16:39:49 +0100
Commit message:

 Merge pull request #36 from saezlab/RELEASE_3_12

fixed bug in unit tests due to Seurat pkg update 
Package: dorothea
Commit: 4efc44cf7d6f9c1edead96c802e1427e55a8b705
Author: Christian Holland <cholland2408@gmail.com>
Date: 2021-03-08 16:32:52 +0100
Commit message:

 Merge branch 'master' into RELEASE_3_12 
Package: dorothea
Commit: 124250066197746eb516c5ce1a3e3b5d6e02f991
Author: Christian <cholland2408@gmail.com>
Date: 2021-02-08 19:13:43 +0100
Commit message:

 fixed bug in unit tests due to Seurat pkg update
 
Package: cyanoFilter
Commit: 127f77544fec1845936eef79670c28534fc2ebc7
Author: fomotisUhasselt <oluwafemi.olusoji@uhasselt.be>
Date: 2021-03-08 15:51:43 +0100
Commit message:

 Latest version of cyanoFilter after feedbacks from Bioconductor
 
Package: cyanoFilter
Commit: 73173dcbd9b61cd378b190e73728a7951506b023
Author: fomotisUhasselt <oluwafemi.olusoji@uhasselt.be>
Date: 2021-03-02 18:15:52 +0100
Commit message:

 Updated Vignette
 
Package: ensemblVEP
Commit: 3ba5e6f049978ee397ec75e4a4a569bfb9b4485d
Author: Lori Shepherd <lori.shepherd@roswellpark.org>
Date: 2021-03-08 09:25:26 -0500
Commit message:

 Update for ensembl 103
 
Package: CARNIVAL
Commit: 79608ca4c613a59047223b2e823aa1764fe693f1
Author: Olga Ivanova <ivanovaos.09@gmail.com>
Date: 2021-03-08 14:56:57 +0100
Commit message:

 Merge branch 'master' of git.bioconductor.org:packages/CARNIVAL into master_bioc
 
Package: CARNIVAL
Commit: b3a84c6ba9706547caca02644566d75ee621f568
Author: Olga Ivanova <ivanovaos.09@gmail.com>
Date: 2021-03-08 14:54:10 +0100
Commit message:

 Merge branch 'master' into master_bioc

* master:
  variable not found issues
  Update write_constraints_6.R
  these drops should be gone, otherwise matrix dimensions change
  Update write_objective_function_all.R
  Update DESCRIPTION
  Update checkMeasObj.R
  Updated author roles
  Update maintainer of the package
  Update README.md
 
Package: CARNIVAL
Commit: f3db2e7625c75122261c06991eabc41985145834
Author: ivanovaos <ivanovaos.09@gmail.com>
Date: 2020-10-14 17:02:53 +0200
Commit message:

 Merge pull request #38 from saezlab/gabora-constr6_issue

Update write_constraints_6.R 
Package: CARNIVAL
Commit: d9c76e0049bacd7000f4e435b8a07415d19a5099
Author: ivanovaos <ivanovaos.09@gmail.com>
Date: 2020-10-14 17:02:33 +0200
Commit message:

 Merge pull request #39 from saezlab/gabora-drop-issue

variable not found issues 
Package: CARNIVAL
Commit: 52bc176055489d6a11a6858830ff6dba24da0c71
Author: Attila Gabor <gabor.attila87@gmail.com>
Date: 2020-10-13 15:51:54 +0200
Commit message:

 variable not found issues
 
Package: CARNIVAL
Commit: e86431e5d37b31d6fd9a244c7d39769843332e96
Author: Attila Gabor <gabor.attila87@gmail.com>
Date: 2020-10-13 14:41:56 +0200
Commit message:

 Update write_constraints_6.R

cc1 is not found in certain cases 
Package: CARNIVAL
Commit: e7685a4b7742f63dc92ef52dab85f94c1502a24d
Author: ivanovaos <ivanovaos.09@gmail.com>
Date: 2020-10-13 14:01:37 +0200
Commit message:

 Merge pull request #37 from saezlab/gabora-drop-issue

Update write_objective_function_all.R 
Package: CARNIVAL
Commit: e7cbf6ca8228f56aa0501f22406366fd9485f6a6
Author: Attila Gabor <gabor.attila87@gmail.com>
Date: 2020-10-13 13:58:46 +0200
Commit message:

 these drops should be gone, otherwise matrix dimensions change
 
Package: CARNIVAL
Commit: 33c0f73256924a3633634fb8489c9d2b34a1e889
Author: Attila Gabor <gabor.attila87@gmail.com>
Date: 2020-10-13 10:25:55 +0200
Commit message:

 Update write_objective_function_all.R

set drop=FALSE for subsetting matrices 
Package: CARNIVAL
Commit: 85bafc3be250398a70f34aeab82ef6d9584e6b7f
Author: ivanovaos <ivanovaos.09@gmail.com>
Date: 2020-09-16 12:35:59 +0200
Commit message:

 Update DESCRIPTION

New contributor roles, fixing verson for syncing with bioconductor 
Package: CARNIVAL
Commit: 724bae6d34c7a61aae0496f1b1ad25009f2d29ae
Author: enio23 <enio.gjerga@gmail.com>
Date: 2020-09-14 11:57:36 +0200
Commit message:

 Update checkMeasObj.R

Closes issue #24 
Package: CARNIVAL
Commit: 37156ed273b1d4a8f1f58d59cd2a5f0e40bbe28b
Author: Christian <cholland2408@gmail.com>
Date: 2020-07-21 14:52:43 +0200
Commit message:

 Updated author roles
 
Package: CARNIVAL
Commit: 274e1d60b647ca71c5c1921976ea6d4ccb8f4c62
Author: enio23 <enio.gjerga@gmail.com>
Date: 2020-07-08 09:57:41 +0200
Commit message:

 Update maintainer of the package

Aurelien as the maintainer of the package + some changes in authorship and contributions 
Package: CARNIVAL
Commit: a56d3cf68b631d6b447909ee103b3edec2258c53
Author: Christian <cholland2408@gmail.com>
Date: 2020-04-29 11:52:03 +0200
Commit message:

 Updated gh page
 
Package: CARNIVAL
Commit: 069ced6b2caf4db747cde2713dfb83ba0bdf3973
Author: enio23 <enio.gjerga@gmail.com>
Date: 2020-04-29 11:31:13 +0200
Commit message:

 Update README.md

update readme 
Package: CARNIVAL
Commit: 6f3eaa71333266acfc9f26b1c33cf6307f7899c8
Author: enio23 <enio.gjerga@gmail.com>
Date: 2020-04-29 10:31:51 +0200
Commit message:

 Merge pull request #19 from christianholland/master

Release of new GitHub page 
Package: CARNIVAL
Commit: 20a37c61d8d1479881fd5bb8ecd52c96a7ff4a19
Author: Christian <cholland2408@gmail.com>
Date: 2020-04-28 22:11:08 +0200
Commit message:

 gh page update
 
Package: CARNIVAL
Commit: 99b8d48fda4762b09da9189ccd64b1e5585dddf5
Author: Christian <cholland2408@gmail.com>
Date: 2020-04-28 22:03:11 +0200
Commit message:

 Setup of gh page
 
Package: limma
Commit: 5c3341e4e66a188acb4d68575f4ce3684a1248bc
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2021-03-08 21:32:26 +1100
Commit message:

 limma 3.47.9

- Help page for voom() now explains that the design matrix will be
  set from the `group` factor of the DGEList object if available.
 
Package: cellmigRation
Commit: cd946da1e71cdf2e3fb5a0697c390d959a38db6d
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-08 10:26:48 +0100
Commit message:

 Resolved conflict between NAMESPACE and DESCRIPTION

Addresses warnings from http://bioconductor.org/spb_reports/cellmigRation_buildreport_20210308041031.html#machv2_buildsrc_anchor. Still trying to (blindly) get it to build on macOS.
 
Package: cellmigRation
Commit: 86fa054954ea95ef8d9173c3341443f28776062c
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-08 10:26:24 +0100
Commit message:

 Moved kableExtra back to Suggests
 
Package: cellmigRation
Commit: 9ef64b90e9c8be329c3aee40ba8cb8c82b8cd47f
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-08 10:13:08 +0100
Commit message:

 Version bump
 
Package: cellmigRation
Commit: d17a282db8902efd665e9b8ee841576412ddba4e
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-08 09:50:53 +0100
Commit message:

 Merge branch 'release-0.99.5'
 
Package: cellmigRation
Commit: a0e2174e58b687c48946ea356e672a276901d64e
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-08 09:50:02 +0100
Commit message:

 Bumped patch version
 
Package: cellmigRation
Commit: 70bd20e3e92696072f30ab2c5056b9a985cc5381
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-08 09:49:24 +0100
Commit message:

 Updated R version dependency
 
Package: cellmigRation
Commit: 873bb25b425049c61f81aebde42b5d933f4a0935
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-08 09:48:34 +0100
Commit message:

 Moved kableExtra to Imports
 
Package: cellmigRation
Commit: f5cf9149be01f9c826faf98dd7d80661a182b226
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-08 09:08:31 +0100
Commit message:

 Version bump to trigger Bioc bot
 
Package: clusterExperiment
Commit: 4a34b65a26e6f4479706dcd81465c5671a6efc1c
Author: Elizabeth Purdom <epurdom@stat.berkeley.edu>
Date: 2021-03-07 22:38:29 -0800
Commit message:

 Merge branch 'master' of github.com:epurdom/clusterExperiment
 
Package: clusterExperiment
Commit: 2e32b9a6b82b1d7f4ad10a8c328f16bee18ff46b
Author: Elizabeth Purdom <epurdom@stat.berkeley.edu>
Date: 2021-03-07 22:38:06 -0800
Commit message:

 bump up version
 
Package: CAMERA
Commit: 9f4552cb71d19a43cde84ccd4d8e6819d3f47f65
Author: Steffen Neumann <sneumann@ipb-halle.de>
Date: 2021-03-07 22:51:24 +0100
Commit message:

 Thanks to Lain (INRAe) and Team W4M for this PR, fixing argument passing to annotatedDiffreport()
 
Package: CAMERA
Commit: 7de48ce04b65c180562024d4234f405e9b70eaa5
Author: Steffen Neumann <sneumann@ipb-halle.de>
Date: 2021-03-07 22:46:55 +0100
Commit message:

 Merge branch 'master' of github.com:sneumann/CAMERA
 
Package: CAMERA
Commit: eb68d263fc32859ce25b287a6493ef91a060f272
Author: Steffen Neumann <sneumann@ipb-halle.de>
Date: 2021-03-07 22:46:12 +0100
Commit message:

 Merge pull request #68 from Lain-inrae/transmit_annotateDiffreport_params_to_groupCorr

[WIP - waiting for !66 ]Transmit annotate diffreport params to group corr 
Package: CAMERA
Commit: fab4966f9e52e310bf12617b15943ad611d8c531
Author: Steffen Neumann <sneumann@ipb-halle.de>
Date: 2021-03-07 22:45:35 +0100
Commit message:

 Merge pull request #66 from Lain-inrae/transmit_calcIso_flag_to_groupCorr

calcIso flag is transmited to groupCorr sub-function in annotateDiffreport function 
Package: CAMERA
Commit: 6490547c4f9164e1277d18a427b63562810a2d85
Author: Lain Pavot <lain.pavot@inrae.fr>
Date: 2021-02-24 11:40:19 +0100
Commit message:

 Parameters that annotateDiffreport takes are transmitted to groupCorr function.

Related unit tests have been redacted.
 
Package: CAMERA
Commit: 94e6f894bc0fbe0af6d8a8d0956b379007522b9e
Author: Lain Pavot <lain.pavot@inrae.fr>
Date: 2021-02-23 11:53:53 +0100
Commit message:

 calcIso flag is transmited to groupCorr sub-function in annotateDiffreport function
 
Package: scran
Commit: 3f0ce461c330a85b52ff7d4da5d5f226110e3d6b
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-03-07 12:18:12 -0800
Commit message:

 Fixed up documentation around direction=.
 
Package: OSCA.advanced
Commit: 5d29c03b5e736c14cb1e12a848e767624a81794e
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-03-07 11:42:10 -0800
Commit message:

 Fixed license and titles.
 
Package: OSCA.advanced
Commit: ffae270e0ce4711d1fb2b3adc1b9195aa9920925
Author: Aaron Lun <LTLA@users.noreply.github.com>
Date: 2021-03-07 11:40:58 -0800
Commit message:

 Migrated advanced QC topics from Basic book into a new chapter. (#2)

 
Package: OSCA.advanced
Commit: 94d0c616e6a264ea59090805614a0fba8c5b0ae5
Author: GitHub Action <action@github.com>
Date: 2021-03-04 08:37:17 +0000
Commit message:

 Rebuilding sundries.
 
Package: TBSignatureProfiler
Commit: 9b977eccc58adc75e200d7ef8743b2d06d6e360f
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-03-07 13:02:07 -0500
Commit message:

 Merge branch 'master' of https://github.com/compbiomed/tbsignatureprofiler
 
Package: TBSignatureProfiler
Commit: e09a4ff2770d82958134a10453552ef44d13c67c
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-03-07 12:11:04 -0500
Commit message:

 Create new COVID signatures vignette for website
 
Package: TBSignatureProfiler
Commit: d4f9890a9dad3949eb3431c4be967f413a685079
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-03-07 12:11:04 -0500
Commit message:

 Create new COVID signatures vignette for website
 
Package: TBSignatureProfiler
Commit: 6ce940f00b20b1013d4b6094df683139214f0ae8
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-03-07 12:09:32 -0500
Commit message:

 Comment out testing functions
 
Package: TBSignatureProfiler
Commit: 2e1feca68829479d114c206b14d2c94e8b62e9a0
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-03-07 12:09:13 -0500
Commit message:

 Update news and version number
 
Package: TBSignatureProfiler
Commit: 22c7feb4d030acf01e43b38e83d52f8d9b82582b
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-03-07 11:42:50 -0500
Commit message:

 Add COVIDsignatures object (Dylan Sheerin)
 
Package: TBSignatureProfiler
Commit: cb1b0717197aca43ceacf6939f61a494c8ca115b
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-03-07 11:01:24 -0500
Commit message:

 Correct signature documentation ordering to match objects
 
Package: TBSignatureProfiler
Commit: df5c89eb1ff86005d692aa9a3d9431fd27968612
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-02-14 15:33:44 -0500
Commit message:

 Add script to help with coverage in testing
 
Package: TBSignatureProfiler
Commit: 814ea41aa84115b0927582971970e673bdeda3cf
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-02-14 15:33:29 -0500
Commit message:

 Clarify vignette
 
Package: TBSignatureProfiler
Commit: 38b07d289b557123dbbd6e68986ca62e234d8e2f
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-02-14 15:33:13 -0500
Commit message:

 Remove mention of shiny tutorial
 
Package: TBSignatureProfiler
Commit: e3920955dc89ab751e34661d18bd8b465d6304b7
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-02-07 23:12:27 -0500
Commit message:

 Fix lintr
 
Package: TBSignatureProfiler
Commit: 8b47d089191f94dfad5e309ebcb5684bba57350d
Author: Aubrey <aubreyodom55@gmail.com>
Date: 2021-02-07 23:11:53 -0500
Commit message:

 Update website
 
Package: DESeq2
Commit: b7f75ca3b4937960bd940cde55c62779c798f08d
Author: mikelove <michaelisaiahlove@gmail.com>
Date: 2021-03-07 11:13:09 -0500
Commit message:

 adding saveCols to results and lfcShrink
 
Package: DIAlignR
Commit: 673aa7ab7f373cf0c449d5fafd877233d4965a14
Author: Shubham <sgupt46@alumni.uwo.ca>
Date: 2021-03-07 10:58:22 -0500
Commit message:

 Bug Fix. Negative time in merged chromatogram no more
 
Package: STRINGdb
Commit: 2a865e9f9872eb00a1bdf7dfd75b2fa3ee31348b
Author: Damian Szklarczyk <damian.szk@gmail.com>
Date: 2021-03-07 16:33:22 +0100
Commit message:

 bugfix: network flavor parameter added in plot_network
 
Package: EnMCB
Commit: 361b2c6ee1e6968d75557d8cf4e268db396ff4a9
Author: 于昕 MacBook pro <yuxin@yuxindeMacBook-Pro.local>
Date: 2021-03-07 22:59:59 +0800
Commit message:

 document
 
Package: EnMCB
Commit: 3ad74923a2e47e85d6ceca126f99f41c55dedf2a
Author: yu xin <whirlsyu@gmail.com>
Date: 2021-03-07 22:47:42 +0800
Commit message:

 mboost
 
Package: ribosomeProfilingQC
Commit: ec66e7b306ee13a7e58c5549662d3ad26c9360f5
Author: jianhong <jianhong.ou@gmail.com>
Date: 2021-03-07 09:00:44 -0500
Commit message:

 keep the raw counts for countReads
 
Package: NormalyzerDE
Commit: 8b76565f263e35e8d2a50df431d24bc55ea46708
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2021-02-28 21:40:39 +0100
Commit message:

 Version sync
 
Package: NormalyzerDE
Commit: 116e93c27266eb705c3faa34fe7841d38822c1fe
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2021-02-28 21:38:46 +0100
Commit message:

 Merge version
 
Package: NormalyzerDE
Commit: 6a1bf54557dc7a575f3317f18608f8207975b1c2
Author: Jakob Willforss <Jakob37@users.noreply.github.com>
Date: 2021-02-21 15:38:58 +0100
Commit message:

 Omit automatic testing 
Package: NormalyzerDE
Commit: 73c59fa9ea704c0cff3f89612cd5fbc69d951851
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2021-02-07 16:28:49 +0100
Commit message:

 Merge branch 'master' of github.com:ComputationalProteomics/NormalyzerDE
 
Package: NormalyzerDE
Commit: 330bc13a3b9c85134cfefdb63f5e168486e48479
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2021-02-07 16:27:15 +0100
Commit message:

 Further notifications on updated maintainer email

(cherry picked from commit 7bcb9abaf3314496167337a1f352fc739a998dc6)
 
Package: NormalyzerDE
Commit: aec96a5ded2fede153d9f5bf0f1a97f30de4ce94
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2021-02-07 16:25:50 +0100
Commit message:

 Updating the maintainer email

(cherry picked from commit 42f3064a6d8a593b71c7d78714a12cad86ce895b)
 
Package: NormalyzerDE
Commit: c51320cb40ba21baef4ebde7529d6d4c1b17f396
Author: Jakob Willforss <Jakob37@users.noreply.github.com>
Date: 2020-10-09 16:16:35 +0200
Commit message:

 Update the citation 
Package: NormalyzerDE
Commit: 4c42e03d2e174edff67c5995f1f061c25b2f9179
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2020-06-08 17:28:09 +0200
Commit message:

 Explicitly state source of graphic functions
 
Package: NormalyzerDE
Commit: f17b7d1277625a094c9710554e9a55d3a6d97d3e
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2020-06-08 17:04:32 +0200
Commit message:

 Include news and version bump
 
Package: NormalyzerDE
Commit: 0a469773ed49434cbd5bf9393460f3edbf431542
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2020-06-08 17:01:25 +0200
Commit message:

 Merge branch 'report_updates'
 
Package: NormalyzerDE
Commit: ca3f35cde0a46a071b807e0ebf5f8e9e3556e331
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2020-06-08 17:01:14 +0200
Commit message:

 Omit spaces in test data header
 
Package: NormalyzerDE
Commit: e8c52a667282b62e1f5f2b3c16d5648293cfe0d3
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2020-06-08 17:00:55 +0200
Commit message:

 Include model for smooth MA plot to prevent messages
 
Package: NormalyzerDE
Commit: b0439bc2a23f07619c1198586813bda283f3edf2
Author: Jakob <jakob.willforss@hotmail.com>
Date: 2020-06-04 09:31:00 +0200
Commit message:

 Fix tests to include Limma intensity trend
 
Package: NormalyzerDE
Commit: 57dbf38d66f10135963d997460e5272b53623715
Author: Jakob <jakob.willforss@hotmail.com>
Date: 2020-06-04 09:28:30 +0200
Commit message:

 Specify setdiff explicit from base to prevent conflicts in the conflicted package
 
Package: NormalyzerDE
Commit: 9e2e6e04a7fcc5479919aa7e52990a259e4f0957
Author: Jakob <jakob.willforss@hotmail.com>
Date: 2020-06-02 16:46:30 +0200
Commit message:

 Statistical report also allow PNG. Allow intensity trend in Limma.
 
Package: NormalyzerDE
Commit: 5e2f7ecbe42aad7ce0d87186ef199662cf3f19f6
Author: Jakob <jakob.willforss@hotmail.com>
Date: 2020-06-02 12:10:22 +0200
Commit message:

 Numbered PNG plots working as output, with related refactor. Sample setup screen in place.
 
Package: NormalyzerDE
Commit: 18cdacf27d408c471da3020f4d598944ae4afc27
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2020-06-01 17:45:20 +0200
Commit message:

 Draft both PNG report and sample setup display
 
Package: NormalyzerDE
Commit: a222e2d267913ce1cdcb8f2cf8b87533b29038b6
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2020-05-08 10:30:57 +0200
Commit message:

 Version bump for Travis uncached rerun
 
Package: NormalyzerDE
Commit: ab8b408934954e0665120c80bbbdade93d586b50
Author: Jakob Willforss <jakob.willforss@hotmail.com>
Date: 2020-05-06 13:34:22 +0200
Commit message:

 Minor issue where matrix was dropped to vector
 
Package: NormalyzerDE
Commit: cbe6ac222a71e7ec8f70d3119008555681458a30
Author: Jakob <jakob.willforss@hotmail.com>
Date: 2020-03-02 14:08:45 +0100
Commit message:

 Travis issues
 
Package: OSCA.basic
Commit: 618f70c64255757b7e9010a02da261e3009daef9
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-03-06 22:46:05 -0800
Commit message:

 Fiddled with the title and license.
 
Package: batchelor
Commit: 853b57929fb91da320618a99468e7d4d9c43534e
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-03-06 19:36:54 -0800
Commit message:

 Bumped version, date; updated NEWS.
 
Package: batchelor
Commit: 3b4b03a2e34cf3d4d7f7f43408b585fbf1d20e48
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-03-06 19:36:05 -0800
Commit message:

 Bugfix for test for the time being.
 
Package: batchelor
Commit: 6cda26c30ed65dc9e0b5422f2f0939bc8fdbae12
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-03-06 00:14:17 -0800
Commit message:

 Added a whole stack of files to .gitignore.
 
Package: batchelor
Commit: d4710936250bd7c8ca2620faa41c3c826e835f54
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-03-06 00:13:24 -0800
Commit message:

 Removed accidentally committed file.
 
Package: batchelor
Commit: d90d7447e5c63bdbc2dcd3ddff34ba43fb95b225
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-03-05 23:55:59 -0800
Commit message:

 Bugfixes and tests for the new quickCorrect function.
 
Package: batchelor
Commit: ccc669360afe912493478e9fdef3e0e2569364df
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-03-04 23:58:25 -0800
Commit message:

 Added a quickCorrect function to wrap the usual workflow.
 
Package: batchelor
Commit: 052656aed38081467b3f52f06260873cf885a3fc
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-03-04 22:58:58 -0800
Commit message:

 Added utility to quickly intersect the rows.
 
Package: ComPrAn
Commit: 5f8c1d8c4a17fb2a3311a3fbb885e5c00ca1f12b
Author: Petra_P <pp451@cam.ac.uk>
Date: 2021-03-06 23:43:48 +0000
Commit message:

 change default alphaValue

in man files
 
Package: RCy3
Commit: 983ce046c6ea710d908ece331252ef17db051cde
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2021-03-06 15:22:51 -0800
Commit message:

 bug fix #101: setters for delays; version bump
 
Package: RCy3
Commit: 7bdd634bfef6051056cd22d5643e717ca2ff5c4c
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2021-03-06 12:32:48 -0800
Commit message:

 bug fix #115: multigraphs and repeat nodes
 
Package: RCy3
Commit: 825db747389420e009e0be05b4b97b09a849b2c2
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2021-03-05 17:18:25 -0800
Commit message:

 bug fix #112
 
Package: RCy3
Commit: bf55832d25c0e6c0a04efded3d4e8f7e9efdf2a2
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2021-02-23 15:12:21 -0800
Commit message:

 docs for #114
 
Package: RCy3
Commit: bda25eafbaa78377f830a114fa76d9402e92561e
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2021-02-23 15:08:55 -0800
Commit message:

 fixes #114: ndex.url
 
Package: RCy3
Commit: f58266e55970c2744450591f304afbb8bb7c231f
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2021-02-22 17:01:08 -0800
Commit message:

 fixed typo for #114
 
Package: RCy3
Commit: ec4eecdf42fa019c30cb0ce28527b29c712a6a20
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2021-02-22 16:09:53 -0800
Commit message:

 version bump
 
Package: RCy3
Commit: 006af69e616c73f85cb2db7b0bcec940c7aa389d
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2021-02-22 16:08:36 -0800
Commit message:

 bug fix #114
 
Package: ComPrAn
Commit: 75eb33a4ee75a72b3e7dac0468d1d3fa40cafc80
Author: Petra_P <pp451@cam.ac.uk>
Date: 2021-03-06 22:47:38 +0000
Commit message:

 change default alphaValue
 
Package: ComPrAn
Commit: 1fa1211d075ce355e1af7f8c68603e987660f131
Author: Petra_P <pp451@cam.ac.uk>
Date: 2021-03-06 22:45:56 +0000
Commit message:

 add citation file
 
Package: DIAlignR
Commit: b00d08a716329a4e4efb9515d0d271dce9b377e8
Author: Shubham <sgupt46@alumni.uwo.ca>
Date: 2021-03-06 14:32:08 -0500
Commit message:

 Bug Fix
 
Package: SDAMS
Commit: e35c51d9f0397fb50c7fad74f9b7c974d92825cd
Author: Yuntong Li <li@li-2.local>
Date: 2021-03-06 12:33:00 -0500
Commit message:

 update viggnette with single cell
 
Package: InterCellar
Commit: 8a4f83bb07e1d4970c5175943231d22bcf732e20
Author: martaint <marta.interlandi01@gmail.com>
Date: 2021-03-06 17:12:47 +0100
Commit message:

 cl-verse barplots tiff and csv
 
Package: ExperimentSubset
Commit: f0d04f6359516d0ce1f494ad1cc56316caf16dbe
Author: irzamsarfraz <33160268+irzamsarfraz@users.noreply.github.com>
Date: 2021-03-06 19:13:56 +0500
Commit message:

 Merge remote-tracking branch 'upstream/master'
 
Package: ExperimentSubset
Commit: e1e3e534814ac697c9afff96aa5d6fdb0e613676
Author: irzamsarfraz <33160268+irzamsarfraz@users.noreply.github.com>
Date: 2021-03-06 18:59:03 +0500
Commit message:

 Updated .travis.yml
 
Package: ExperimentSubset
Commit: 061b80675545101b9037986cdbc0b2cd1eb95bbf
Author: Irzam Sarfraz <irzam9095@gmail.com>
Date: 2021-03-06 10:01:11 +0500
Commit message:

 move devel to master branch
 
Package: ModCon
Commit: 4351bcb0411bd536a43bb137182b98b676e4981e
Author: caggtaagtat <Johannes@web.de>
Date: 2021-03-06 14:25:36 +0100
Commit message:

 bump up version number
 
Package: rmelting
Commit: b7448f4128040925179a1fe90af7b54ee07e1a9b
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-06 13:17:42 +0100
Commit message:

 Fixed conflicts in version change
 
Package: rmelting
Commit: dacb0cce2da4e489ce9e7e6d82016dacea71be5d
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-06 13:10:50 +0100
Commit message:

 update readme

Merge remote-tracking branch 'origin/master'

# Conflicts:
#	README.md
 
Package: rmelting
Commit: 8905f600f2874bfb44fe997f47bbee7f33ece40d
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-06 13:01:24 +0100
Commit message:

 Fix badges
 
Package: rmelting
Commit: d843721e7b7c69c0e5305ad60b34083f7e7acdcd
Author: GitHub Actions <actions@github.com>
Date: 2021-03-06 11:57:51 +0000
Commit message:

 Re-build README.md
 
Package: rmelting
Commit: 4f8fbe2b73ef21dedf24eaee33c9e04e9da34a7b
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-06 12:23:01 +0100
Commit message:

 Fix links
 
Package: rmelting
Commit: ab9a361cea2cab9bcb1cf79a23be8c3d78dc7588
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-06 12:03:15 +0100
Commit message:

 Attempt to run unit tests
 
Package: rmelting
Commit: 0df30359858beba28d802f8d6c41f35cde8aa390
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-05 02:12:38 +0100
Commit message:

 Fix pkgdown.yml
 
Package: rmelting
Commit: f5072513b470b106f338e27f55c23236fcfc6234
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-05 01:55:30 +0100
Commit message:

 Add lfs: 'true'
 
Package: rmelting
Commit: 15665e2b5b22f0c808f8032e7700efec0bc5cf98
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-05 01:49:40 +0100
Commit message:

 Disable macOs and windows until rjava setup can be figured out
 
Package: rmelting
Commit: 71a742ef015189c856179183d4516e5113ac6a1f
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-05 01:38:41 +0100
Commit message:

 Fix ghostscript
 
Package: rmelting
Commit: 1977edf05d68aa01a96fed8051adb75d92039617
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-05 01:22:42 +0100
Commit message:

 Add xquartz for macOS testing
 
Package: rmelting
Commit: 81d083a71f8116441b0ea48732a2c287edbe02fa
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-05 01:09:00 +0100
Commit message:

 Add macOS ghostscipt and tinytex pdfcrop
 
Package: rmelting
Commit: 46cb18d3a140f497cc10b64d13ebb92a91f0f970
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-05 00:54:57 +0100
Commit message:

 try with macOS
 
Package: rmelting
Commit: a99fa5a86f5f1641a76b828d20bb3a31d3cd6e4e
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-05 00:50:50 +0100
Commit message:

 Try with new_process = TRUE
 
Package: rmelting
Commit: 81ec0b16ad2f2553f0560dfea41fe06159b8ff54
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-05 00:19:30 +0100
Commit message:

 Update java config for windows and remove pkgdown
 
Package: rmelting
Commit: de8df49211e8a569fc0234b9987680f98d4d00ea
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 21:51:40 +0100
Commit message:

 Force clean
 
Package: rmelting
Commit: 4d3b1a55a0d8e9339a76b15b296b776bea673dee
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 21:32:33 +0100
Commit message:

 Fixed table display
 
Package: rmelting
Commit: 7bca7e565f2dc73a46c75d2278a280e4d6349f77
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 21:32:21 +0100
Commit message:

 removed `new process`
 
Package: rmelting
Commit: 38c526653e672bb1ea6ca5474615c2e8bb1de100
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 21:08:51 +0100
Commit message:

 try --no-multiarch for windows
 
Package: rmelting
Commit: 06fef2a9838c6028d3e3c684b50f10cfce82af0e
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 21:07:43 +0100
Commit message:

 Tidy badges
 
Package: rmelting
Commit: 340574d949c9a2a53c443ecf87de6c396d0c301d
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 20:01:37 +0100
Commit message:

 Add cairo to fix macOS issue
 
Package: rmelting
Commit: edf558480c268dc5c424f00fe6cf80b0d703e48e
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 19:41:19 +0100
Commit message:

 Fix fa icons
 
Package: rmelting
Commit: a68b9c3df98a27a9cd47921bb40a49a2ba1e2805
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 19:24:08 +0100
Commit message:

 Try with r release for windows and macOS
 
Package: rmelting
Commit: 1e6d088f06e5eee9cd5fa114dc30fdbe0ed49896
Author: GitHub Actions <actions@github.com>
Date: 2021-03-04 18:08:07 +0000
Commit message:

 Re-build badges on 2021-03-04 18:08:07
 
Package: rmelting
Commit: 1d03f3e1f1ccf3a8821c6b10152bd486eb9587f0
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 19:02:01 +0100
Commit message:

 forced push commit
 
Package: rmelting
Commit: 850c0bf6e6aa06a53998ce0835d4548d6574526d
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 18:32:17 +0100
Commit message:

 Add .BBSoptions
 
Package: rmelting
Commit: 8dd250bf2c11f6c41010ea7bb93cd01d92672b18
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 18:27:36 +0100
Commit message:

 force commit
 
Package: rmelting
Commit: 69467303718e15788e6c4da7b552e38ad57b3663
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 18:11:03 +0100
Commit message:

 Add java
 
Package: rmelting
Commit: 7360a4bb8450504d342a6fc0bfba43f37a9de348
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 18:10:51 +0100
Commit message:

 update badges
 
Package: rmelting
Commit: 9f69ca75c4c906c6084776d60e203fe6f67be3ff
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 17:43:00 +0100
Commit message:

 tinytex before any other dependencies
 
Package: rmelting
Commit: 204fed23525d126082c6d5e8528a9d4addba966b
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 17:40:46 +0100
Commit message:

 Remove kableExtra
 
Package: rmelting
Commit: f33ef395e77e58ba760b07dee53337e6900c3adb
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 17:40:31 +0100
Commit message:

 Reorder badges and add bioc-check gha badge
 
Package: rmelting
Commit: a1a4c64e6cd4f259d1a218b8fe1207ffb59f35a9
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 17:20:31 +0100
Commit message:

 Clean up ignored files
 
Package: rmelting
Commit: 3d930d59bbdfef9f12769bf3c66e39c9b49d1184
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 17:14:43 +0100
Commit message:

 Setup tinytex within R
 
Package: rmelting
Commit: b432eac58af6198c6be70d10c3f1dcd4412f9931
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 17:14:09 +0100
Commit message:

 Fix links
 
Package: rmelting
Commit: 7f067983c0c417695e5579e47336ca9a57d92298
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 13:56:33 +0100
Commit message:

 remove readme.html
 
Package: rmelting
Commit: 45e32ac9d3c0147247e0cf8ae070f07592565825
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 13:51:36 +0100
Commit message:

 Add tinytex
 
Package: rmelting
Commit: 4828399194cc51fa182f45d96757c39700238079
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 13:51:19 +0100
Commit message:

 Re-add readme.rmd to origin
 
Package: rmelting
Commit: 33403625cb840ea3483395138ebb8dc380816697
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 12:35:16 +0100
Commit message:

 Add github actions
 
Package: rmelting
Commit: 1c978f29f099281d853dfff4729b721cc549400d
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 12:34:56 +0100
Commit message:

 Version bump 1.7.1
 
Package: rmelting
Commit: 6bd2063f8574c3580d3ef5754dbbed40998d2554
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 12:31:55 +0100
Commit message:

 Reflow
 
Package: rmelting
Commit: fb9fb7ff5ad5993e23dc58faa2abb96ce0c18ab6
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 11:51:51 +0100
Commit message:

 Correct workflow name
 
Package: rmelting
Commit: e3caa15c1f8b3779405acdc8a269067663f99c15
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-04 11:48:45 +0100
Commit message:

 Add badges workflow
 
Package: rmelting
Commit: eb4c22cc3443c7b31373c9aa8587fea57903e1bb
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-03 22:19:38 +0100
Commit message:

 Fix melting link
 
Package: rmelting
Commit: f03d7e43d1b167f363c593fd5bd9dc9b5e3f0874
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-03 22:10:29 +0100
Commit message:

 Version bump to 1.7.0
 
Package: rmelting
Commit: 296399ac61280e5f298e5bf253f23b53546750e8
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-03 22:03:20 +0100
Commit message:

 Reflow text
 
Package: rmelting
Commit: b0f22161347c97bdb446dd8ef60e093e6494d113
Author: J. Aravind <aravindjayaramanagri@gmail.com>
Date: 2021-03-03 22:02:58 +0100
Commit message:

 Fix link
 
Package: ModCon
Commit: 5c2ed1533000f761b8441825ec7398392fe36cb2
Author: caggtaagtat <Johannes@web.de>
Date: 2021-03-06 13:11:56 +0100
Commit message:

 version
 
Package: ModCon
Commit: 0d04bccf06f7a621d0c93a2cefa15f19aee1c78c
Author: caggtaagtat <Johannes@web.de>
Date: 2021-03-06 13:08:46 +0100
Commit message:

 changed title
 
Package: ggtreeExtra
Commit: aef3901442b49a4166680d8ae59d6b1ae4fa5dbb
Author: xiangpin <xshuangbin@163.com>
Date: 2021-03-04 14:54:46 +0800
Commit message:

 bump version
 
Package: ggtreeExtra
Commit: 316f8782564ea1853c60cee7adbc68a3da57a9ca
Author: xiangpin <xshuangbin@163.com>
Date: 2021-03-04 14:53:34 +0800
Commit message:

 update citation
 
Package: ggtreeExtra
Commit: f736da83724297e30dddecad4c7ccc00eac36a82
Author: xiangpin <xshuangbin@163.com>
Date: 2021-02-24 15:47:55 +0800
Commit message:

 update version and news
 
Package: ggtreeExtra
Commit: 1b8c34d132375c0036815a6b130b69ed139828bd
Author: xiangpin <xshuangbin@163.com>
Date: 2021-02-24 15:41:11 +0800
Commit message:

 remove the axis of first geom_tile
 
Package: ggtreeExtra
Commit: 30b2e67c7e53575f315785068b1851862055f0cb
Author: xiangpin <xshuangbin@163.com>
Date: 2021-02-24 15:39:23 +0800
Commit message:

 check whether the value of x is numeric
 
Package: DIAlignR
Commit: b68787b15f419edf9e36a1469bf21f86d20d8e1d
Author: Shubham <sgupt46@alumni.uwo.ca>
Date: 2021-03-05 18:20:25 -0500
Commit message:

 Bug Fix
 
Package: DIAlignR
Commit: 820be3e9c9ffcd3e269239f4051a87b9cb18216a
Author: Shubham <sgupt46@alumni.uwo.ca>
Date: 2021-03-05 07:32:34 -0500
Commit message:

 Tests +!
 
Package: DIAlignR
Commit: ca1a45d4e04272fc265c26fe25e4778f3b1b1ffd
Author: Shubham <sgupt46@alumni.uwo.ca>
Date: 2021-03-04 14:00:19 -0500
Commit message:

 Bug Fix
 
Package: DIAlignR
Commit: 424a3488651b63df2120503e17551b60952f7c4f
Author: Shubham <sgupt46@alumni.uwo.ca>
Date: 2021-03-03 20:12:37 -0500
Commit message:

 [Feature] Hierarchical clustering with fractions
 
Package: seqsetvis
Commit: f6823419736461ae8d05b0bd2c4445a77dc7cf99
Author: jrboyd <jrboyd@med.uvm.edu>
Date: 2021-03-05 17:52:12 -0500
Commit message:

 bugfix for return_unprocessed PE
 
Package: seqsetvis
Commit: 5fe590bb10ca1ad59ffede36f4e57a69dabe75cf
Author: jrboyd <jrboyd@med.uvm.edu>
Date: 2021-03-05 17:31:00 -0500
Commit message:

 spec update
 
Package: seqsetvis
Commit: 6082390268f169f35b5a15dd3c4e5a5e587e5f05
Author: jrboyd <jrboyd@med.uvm.edu>
Date: 2021-03-05 17:07:35 -0500
Commit message:

 ssvConsensusIntervalSets bugfix if min_number = 0
return_unprocessed supresses fragLens calculation
return_unprocessed same variable names between bam and bamPE
 
Package: hca
Commit: 6b1021840851c712103d287acb03df57c4d6672f
Author: Maya Reed McDaniel <maya.mcdaniel@roswellpark.org>
Date: 2021-03-05 12:26:01 -0500
Commit message:

 increased vignette coverage, lol comments, version bump
 
Package: PANTHER.db
Commit: 191928cb312875bb15c2e1c6fd49774e4b627d53
Author: Julius Mueller <julius.mueller@molecularhealth.com>
Date: 2021-03-05 18:46:43 +0100
Commit message:

 Updated to PANTHER.db v1.0.11 based on pantherdb.org v16
 
Package: PANTHER.db
Commit: e29e5eb7fdfb31d04ac4e85dd7a5b539c88cfb11
Author: Julius Mueller <julius.mueller@molecularhealth.com>
Date: 2021-03-05 17:50:01 +0100
Commit message:

 Updated NEWS
 
Package: PDATK
Commit: 98b608c8ff84fc711a05d69c8dcd7ea28f6cb533
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-03-05 10:58:46 -0500
Commit message:

 Update: version bump for Bioc build
 
Package: PDATK
Commit: 70c2becba6283e996de69000db310df1564f04e5
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-24 19:19:59 -0500
Commit message:

 Fix: Using SerialParam for tests on Windows for speed
 
Package: PDATK
Commit: e069abf5541c1cc2158eece2ea5efaf930f02d57
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-24 13:37:38 -0500
Commit message:

 Fix: changed all(..., na.rm=TRUE) to all.equal call
 
Package: PDATK
Commit: 961dffee0e8291ef533a9c36b95225dd9e1c1417
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-24 13:05:20 -0500
Commit message:

 Fix: Running examples with SerialParam speeds up ~8x
 
Package: PDATK
Commit: e18d319081e5a306bda97b508e75ac8a295f69ae
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-24 11:33:33 -0500
Commit message:

 Update: version bump for Bioc build
 
Package: PDATK
Commit: 1ae2785bb4fe06cec1338a22d1ca8c6c94ee67c5
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-23 15:39:25 -0500
Commit message:

 Fix: Another version bump for Bioc?
 
Package: PDATK
Commit: c6d48b291b39e60c9d7aa4bcfeb35e1ddcccc04a
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-23 15:36:05 -0500
Commit message:

 Update: Version bump for Bioc build
 
Package: PDATK
Commit: 80397aabb62cf4c14cfd5683bae652b79301737f
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-23 15:26:03 -0500
Commit message:

 Fix: Passing R CMD check; examples still too slow on Windows...
 
Package: PDATK
Commit: 97d2cde11a393a7715ff68c66e6e3e054f7d820d
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-23 14:43:48 -0500
Commit message:

 Fix: Incorrect check of length(dots) in SurvivalExperiment constructor
 
Package: PDATK
Commit: 0bf7ee34eee58e36a99f1b4f467a62dc5ddbcf17
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-23 12:21:44 -0500
Commit message:

 Add: more example data to reduce example run-time and prevent TIMEOUT; refactored examples to use new data
 
Package: PDATK
Commit: 2c70a6e3015bc02c6199082c1c564b126d059b9b
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-22 19:50:10 -0500
Commit message:

 FFix: Version bump for Bioc build
 
Package: PDATK
Commit: ee5c678234b276757ede3dcb1a14f542304d3b5d
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-22 19:48:41 -0500
Commit message:

 Merge branch 'master' of github.com:bhklab/PDATK
 
Package: PDATK
Commit: c7581d8052ed4a91b6879f0d703db53cb0fae581
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-22 19:48:09 -0500
Commit message:

 Merge branch 'master' into development
 
Package: PDATK
Commit: adc86617f3ac16d4e7f54145d47f835085a79c50
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-22 19:47:10 -0500
Commit message:

 Fix: Passing R CMD check with new SurvivalExperiment mandnatory columns
 
Package: PDATK
Commit: 5f65ee42a733c13e0c169a29aa747d807fa78054
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-22 19:16:32 -0500
Commit message:

 Fix: examples and tests passing with new data and SurvivalExperiment column names
 
Package: PDATK
Commit: 3fcef95fae92254891847f29ea0c8442c3c3eb32
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-22 18:54:32 -0500
Commit message:

 Update: global rename is_deceased to event_occurred, days_survived to survival_time; resaved all data with new column names
 
Package: PDATK
Commit: 2b3c4de9c6c626ed7447e3f2755b50c7763fc298
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-22 18:14:57 -0500
Commit message:

 Fix: all tests passing again
 
Package: PDATK
Commit: c47d48c8dacff2c2b8645e9ba837341cdd4b8da4
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-22 17:52:53 -0500
Commit message:

 Fix: taking log of lower and upper for the log_D_index stat, so they are all the same units
 
Package: PDATK
Commit: c70c21ae9ce35b8fbb3c23fd9ff1edf2f90edd47
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-22 16:37:34 -0500
Commit message:

 Fix: removed stray print statemnts from testing code
 
Package: PDATK
Commit: 09a6a14886b832bf9d23c3674daceefc3ff8c630
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-22 16:20:20 -0500
Commit message:

 Fix: using coef instead of d.index from survcomp::D.index to correct meta-estimate error
 
Package: PDATK
Commit: 0df06790c76b93da2c9145a99df565479c6a464c
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-22 16:01:37 -0500
Commit message:

 Update: passing checks
 
Package: PDATK
Commit: 29f4af2240a458d7fff7f535e3faa3145690d7e7
Author: Christopher Eeles <44755307+ChristopherEeles@users.noreply.github.com>
Date: 2021-02-19 17:13:45 -0500
Commit message:

 Removed R release from CI/CD 
Package: PDATK
Commit: 6ba36c33bbf5bfef9be16b8d6f872b4b4a6b339e
Author: Christopher Eeles <44755307+ChristopherEeles@users.noreply.github.com>
Date: 2021-02-19 16:45:25 -0500
Commit message:

 Updated BiocManager install for release and devel 
Package: PDATK
Commit: 35feb924764756600a634d242400819793f9646e
Author: Christopher Eeles <44755307+ChristopherEeles@users.noreply.github.com>
Date: 2021-02-19 16:23:45 -0500
Commit message:

 Create R-CMD-check.yml 
Package: PDATK
Commit: af71a7b2a566eee4462466a00a9e6f3dddf11f11
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-19 15:30:35 -0500
Commit message:

 Fix: unit tests working since randomSeed changes
 
Package: PDATK
Commit: d1bcc9f3d0284f061ff9422f5609d43d6ec1be46
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-19 15:07:15 -0500
Commit message:

 Add: getModelSeed generic and method for SurvivalModel objects to ensure users can easily set their session seed from the model parameters'
 
Package: PDATK
Commit: 085c8a475a3dd4b0d346cc3cec53dc096b7ce3e5
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-19 14:42:05 -0500
Commit message:

 Fix: removed all set.seed calls inside functions at requirest of Bioc reviewer; updated documentation to indicate the seed is no longer set localling inside functions
 
Package: PDATK
Commit: 39e0ea62724add195b494c19bab89cd98f96e257
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-18 13:21:26 -0500
Commit message:

 Update: master passing BiocCheck after merge with devel
 
Package: PDATK
Commit: 628bd8993a75fbb18e0900a484364a39abe21b45
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-18 13:09:44 -0500
Commit message:

 Merge branch 'master' into development
 
Package: PDATK
Commit: ced9803b9f3b3fcc563925742912b48efca78e0a
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-18 13:08:17 -0500
Commit message:

 Update: passing BiocCheck and ready to merge with master
 
Package: PDATK
Commit: 55396de02c23024abc1197a7d5857f800e8a1d23
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-18 12:39:38 -0500
Commit message:

 Development version passing tests and checks after merge with master
 
Package: PDATK
Commit: 80511ef9316c25dd0050882d78fdc6371997eb19
Author: Christopher Eeles <44755307+ChristopherEeles@users.noreply.github.com>
Date: 2021-02-18 11:07:14 -0500
Commit message:

 Version bump for Bioc build 
Package: PDATK
Commit: 0b6f11570ecd7af3c191312d9a65bce2ee050ccc
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-18 11:00:55 -0500
Commit message:

 Version bump for Bioc build
 
Package: PDATK
Commit: 21578198505e19c35570e26967e7434c8d89114d
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-17 17:54:12 -0500
Commit message:

 Update: Debugging build and version bump for Bioc push
 
Package: PDATK
Commit: a64751af3587396f99cae4ee08439d2db835d8fe
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-17 16:48:31 -0500
Commit message:

 Fix: missed a conflict in merge with master
 
Package: PDATK
Commit: e80beb61e0aa52f17b4803c83b1ef7031fea8f00
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-17 16:45:50 -0500
Commit message:

 Merge with master
 
Package: PDATK
Commit: 578afceb47f9e1c5360d3adc7055fe76437a00d9
Author: Christopher Eeles <christopher.eeles@outlook.com>
Date: 2021-02-17 16:42:54 -0500
Commit message:

 Fix: Modified examples to run faster on Windows
 
Package: PDATK
Commit: c16f7d4ce488d6cfeea35b9838a5ebbc4ceec126
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-16 13:17:58 -0500
Commit message:

 Fix: resaved all package data with xz compression
 
Package: PDATK
Commit: 484cc48050f4d2ba48b5b2b7afaae88d71b84011
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-11 18:58:06 -0500
Commit message:

 Update: validateModel when model has subtypes working; forestPlots also working
 
Package: PDATK
Commit: 64873c771fef979eb54a08d7fb6041ed4ef99581
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-11 11:13:32 -0500
Commit message:

 Fix: Bug in validateModel,PCOSP_or_RLS_or_RGA-method causing isSummary to be e NA
 
Package: PDATK
Commit: 42cc32d9b4bf0e54f2bbb845dbe1e6e2da2a5ad5
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-10 17:40:16 -0500
Commit message:

 Add: validateModel now calcualtes per subtype statistics if  subtypes have been assigned to the predoction cohorts
 
Package: PDATK
Commit: 055914dfbde6135db549ccdb8847e0bd50627bc3
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-10 13:04:46 -0500
Commit message:

 Fix: Added additional logic in .getExectionContext to correctly fetch the calling function name inside of lapply, mapply and endoapply statements
 
Package: PDATK
Commit: 1ba0ac8c0652409292725e02236bcebf40c05cea
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 20:19:00 -0500
Commit message:

 Update: modified validateModel method for PCOSP class to also compute subtype specific model performance if a model has subtype annotations
 
Package: PDATK
Commit: b694e48ec1dc9aa5d9261b1e50c679e8acb2298e
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 16:57:04 -0500
Commit message:

 Add: unit tests for GeneFuModel trainModel, predictClasses and validateModel methods; bug fixes related to previously mentioned functions
 
Package: PDATK
Commit: 932c557d9fb52b0ebe89cd1e4eabf94be5fdaac6
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 15:56:05 -0500
Commit message:

 Add: trainModel method for GeneFuModel class whichs throws and error telling users this functionality is not implemented
 
Package: PDATK
Commit: a40dbe83692879786912911d26130c7fe5a07f29
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 15:49:13 -0500
Commit message:

 Add: unit tests for GeneFuModel constructor"
 
Package: PDATK
Commit: b31ac1f0f1eae4c4bf5e53be6e2065103f612312
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 15:43:30 -0500
Commit message:

 Add: unit tests for trainModel, predictClasses and validateModel methods for ClinicalModel class
 
Package: PDATK
Commit: 5aed30deb770273bd2901012c61f3b0097925f2d
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 14:29:04 -0500
Commit message:

 Fix: Error in predictClasses for ClinicalModel due to the predict.glm method dropping NA results from the vector
 
Package: PDATK
Commit: 40c4221fab9eace9b0604c3bce8a2cb950e86f0c
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 14:09:46 -0500
Commit message:

 Add: final check in SurvivalExperiment constructor tests for 100% coverage of that file
 
Package: PDATK
Commit: 264fe555a2cd15073e08e494b78c25ce30ef1783
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 14:00:31 -0500
Commit message:

 Fix: Errors in latest SurvivalExperiment constructor test
 
Package: PDATK
Commit: 07e4c3ead0efc0a5c587f8ceb4880ba6f137e54d
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 13:27:33 -0500
Commit message:

 Add: tests for automatic column type coercion in SurvivalExperiment constructor
 
Package: PDATK
Commit: 2b49af40a8a2bc8e01f218f1703d12e3d7df4a1c
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 13:22:01 -0500
Commit message:

 Add: unit test for creating empty SurvivalExperiment object
 
Package: PDATK
Commit: fe82027e993bba1fd073d5b575ae9882d118a418
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 13:17:03 -0500
Commit message:

 Add: unit tests for ClinicalModel constructor
 
Package: PDATK
Commit: f638c33baac6be8c97840dc582c75bc6df749385
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 12:56:10 -0500
Commit message:

 Add: unit tests for ModelComparison constructor and compareModels method
 
Package: PDATK
Commit: a250657adef0f424f4c6faf049d8e02556f7139a
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 12:42:45 -0500
Commit message:

 Add: unit tests for RGAModel constructor
 
Package: PDATK
Commit: 67a68de161b78633149ffc019d020ded13d569c4
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 12:40:26 -0500
Commit message:

 Fix: Error in PCOSP vignette yaml header; Issue where new error checks broke constructor for empty SurvavalExperiment
 
Package: PDATK
Commit: ea68f6172ad2c0774b54e2ea25373a0980058924
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-09 12:30:03 -0500
Commit message:

 Fix: Resolved error introduced by adding model class name to column name for risk predictions
 
Package: PDATK
Commit: a9e7bf594e8fabfa2d6a1a45045ca01f2e950dfa
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-08 19:21:51 -0500
Commit message:

 Fix: wrong argument order in predictClasses call inside validateModel,PCOSP_or_RLS_or_RGA,SurvivalExperiment-method
 
Package: PDATK
Commit: 4d8bf1d6cf9d3de7f6ec013188f6242dd64b03b2
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-08 18:23:12 -0500
Commit message:

 Add: unit tests for RLSModel constructor
 
Package: PDATK
Commit: 1f8a7093a6161c632c6dd1f9f5c6ccfa65eb1a73
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-08 17:42:26 -0500
Commit message:

 Add: Unit tests for modelling workflow methods for the PCOSP class
 
Package: PDATK
Commit: 6036d7ad35f30429f974bd35a1b8cf33b2974226
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-08 16:21:45 -0500
Commit message:

 Fix: error in .generateTSPModels due incorret subset placement
 
Package: PDATK
Commit: 056c1f79d0219b619493ed8ef2d62caf5e5d6a5b
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-08 15:57:22 -0500
Commit message:

 Add: unit tests for SurvivalModel accessor methdos
 
Package: PDATK
Commit: dd8eab7f7dcde53807eac3033ece9086d31fef36
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-08 15:48:01 -0500
Commit message:

 Add: units tests for SurvivalExperiment coercion and SurvivalModel constructor
 
Package: PDATK
Commit: 476c1d041189822a19ea27b5082d6a6a509ceeca
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2021-02-08 14:32:18 -0500
Commit message:

 Add: unit tests for SurvivalExperiment class; fixed some bugs in SurvivalExperiment constructor
 
Package: rawrr
Commit: 908af476c945446bdf2758b516cb6c52e43fa21b
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 16:45:55 +0100
Commit message:

 version inc to 0.99.8
 
Package: rawrr
Commit: 78183564e1e61a639b17c6db5699cd0e0e9c34a0
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 16:42:13 +0100
Commit message:

 version inc; enable vignette build
 
Package: rawrr
Commit: 462de519a35ce6de35ace1e28bf899892ba83739
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 16:31:11 +0100
Commit message:

 cosmetics to produce a meaningful error message
 
Package: rawrr
Commit: c3e42cd28f5bf3c816a74f3422dde7b284189dab
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 16:29:15 +0100
Commit message:

 added test case fro assembly
 
Package: TargetSearch
Commit: c15aafddcfc9991703010d296e635e32b8a6db90
Author: Alvaro Cuadros-Inostroza <acuadros+github@gmail.com>
Date: 2021-03-05 16:27:20 +0100
Commit message:

 Version 1.47.2
 
Package: TargetSearch
Commit: 8c5295d152af4bc4119523eb52e76f04a13632d8
Author: Alvaro Cuadros-Inostroza <acuadros+github@gmail.com>
Date: 2021-03-05 16:13:51 +0100
Commit message:

 `ncdf4` should be in `imports`
 
Package: TargetSearch
Commit: 9a998171b279c3991db6b7ec000397101b99f5bd
Author: Alvaro Cuadros-Inostroza <acuadros+github@gmail.com>
Date: 2021-03-04 09:59:01 +0100
Commit message:

 Correct argument description in man-page (plus typos)
 
Package: ASpli
Commit: 39a5d3fa34c70a25cb7e1fb8c41d3c4ec4c37e1c
Author: andresrabinovich <andresrabinovich@gmail.com>
Date: 2021-03-05 11:44:55 -0300
Commit message:

 Fixes versioning number from 2.1 to 2.1.1 in order to merge with bioconductor devel
 
Package: ASpli
Commit: 7a0fc4ac1239f1da305b2c7878b4b2f7ed867509
Author: andresrabinovich <andresrabinovich@gmail.com>
Date: 2021-03-05 11:40:41 -0300
Commit message:

 Changes version to 2.1 and updates NEWS
 
Package: ASpli
Commit: 8eaad652daa9e9f8f40412c3251dd71cb1bc86e0
Author: Ariel Chernomoretz <ariel@df.uba.ar>
Date: 2021-03-04 17:34:38 -0300
Commit message:

 aver ahora...add new section (ASpli overview) in vignette
 
Package: ASpli
Commit: 6a66cfb4f8390d05042fd6ec01a4af475529ec20
Author: Ariel Chernomoretz <ariel@df.uba.ar>
Date: 2021-03-04 17:33:47 -0300
Commit message:

 Add a new section (ASpli overview) in vignette
 
Package: ASpli
Commit: d045b7d16224ddc3bb8150fb8bcff763377fdf02
Author: Ariel Chernomoretz <ariel@df.uba.ar>
Date: 2021-03-04 16:15:10 -0300
Commit message:

 set: eval=TRUE for quick start and FALSe for every other code chunk in the vignette
 
Package: ASpli
Commit: f4f648f0df315094f42fd64523ac951337ddf3ea
Author: Ariel Chernomoretz <ariel@df.uba.ar>
Date: 2021-03-04 16:00:59 -0300
Commit message:

 ASpli.R and Aspli.Rnw in inst/doc and ASpli.pdf
 
Package: ASpli
Commit: 73041a332adb2fdc53360e54a09a79f44b36c5c5
Author: Ariel Chernomoretz <ariel@df.uba.ar>
Date: 2021-03-04 15:57:26 -0300
Commit message:

 Quick start section was modify in order to use gtf and bam files provided by Aspli package
 
Package: ASpli
Commit: 71952cf3208b5049e9e7ee16d674426e1e30996f
Author: Andres <arabinov@bnf-server-3.fleloir.local>
Date: 2020-12-11 18:33:17 +0000
Commit message:

 Las junturas con NA son removidas pero no pudimos identificar por que aparecen los NA
 
Package: ASpli
Commit: c3a5040d9ff1ec062954acc9ebb13b95e259d242
Author: Andres <arabinov@bnf-server-3.fleloir.local>
Date: 2020-12-01 15:04:25 +0000
Commit message:

 Arregla conflictos entre i12 y master para poder mergear
 
Package: ASpli
Commit: d204765b6f26f19ded19d1ba15f919e33a853311
Author: Andres <arabinov@bnf-server-3.fleloir.local>
Date: 2020-12-01 14:57:16 +0000
Commit message:

 Changes locus overlap from exon overlaps to gene range overlap
 
Package: ASpli
Commit: 4c25c3f7de61b187c8488f2caa3de9ff0468fcf2
Author: achernom <algo107@gmail.com>
Date: 2020-11-24 00:43:42 -0300
Commit message:

 Agregue funcion para plotear un locus (coverage y arquitectura del gen con junturas que aparezcan por ahi). No es necesario que el gen haya pasado el filtro de integratedSignals.
 
Package: ASpli
Commit: 0ee4a9e903051e5116b2a1c9fbc4c654412272ba
Author: Andres <arabinov@bnf-server-3.fleloir.local>
Date: 2020-11-21 13:48:00 +0000
Commit message:

 Fixes issue #6 binGenome function may assign incorrect bins at the start and the end of each gene
 
Package: ASpli
Commit: c1ee573831702c4f2cee148afe96322ac2ba05da
Author: Andres <arabinov@bnf-server-3.fleloir.local>
Date: 2020-09-17 21:57:22 +0000
Commit message:

 Adds paired end to new features
 
Package: ASpli
Commit: c9593e4cc2dfc1adba545b1d109c046d0214ef3b
Author: Andres <arabinov@bnf-server-3.fleloir.local>
Date: 2020-07-24 01:41:06 +0000
Commit message:

 Adds bams on the fly for jCounts
 
Package: ASpli
Commit: 6c0ae2f768a177dbd152b6bc94a14a70409d8d75
Author: Andres <arabinov@bnf-server-3.fleloir.local>
Date: 2020-07-23 23:44:32 +0000
Commit message:

 Fixes error in call
 
Package: ASpli
Commit: 0fdf8cf109cd27cbf135ed2d7845d6c1874c8665
Author: Andres <arabinov@bnf-server-3.fleloir.local>
Date: 2020-07-23 23:35:38 +0000
Commit message:

 Changes system2 call for system
 
Package: ASpli
Commit: 25f94602df09e7b6c3b1e8979b674c9dd8ca7cf3
Author: Andres <arabinov@bnf-server-3.fleloir.local>
Date: 2020-07-23 23:13:34 +0000
Commit message:

 Changes system2 for system call
 
Package: ASpli
Commit: 9a7896b8239ce0c87bfad7611e502be8cf9e7cac
Author: andres <andresrabinovich@gmail.com>
Date: 2020-07-22 20:25:58 -0300
Commit message:

 Changes target data frame to accomodate only one extra column with full call to aligner. Calls aligner in readCounts, builds bai, reads it and drops bam and bai if required
 
Package: ASpli
Commit: 5fbffc54ca30c79aff56748b1f71c84b5a99b70c
Author: andres <andresrabinovich@gmail.com>
Date: 2020-07-21 19:16:36 -0300
Commit message:

 Checks bam existence before running gbCount
 
Package: ASpli
Commit: e4c30524a84119f80274583e8371930469cd6b2d
Author: andres <andresrabinovich@gmail.com>
Date: 2020-07-21 19:10:36 -0300
Commit message:

 Adds alignFastq and dropBAM to gbCounts
 
Package: zellkonverter
Commit: 069239ee6ae73d2b2f205681c15056e33de3a982
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2021-03-05 15:23:54 +0100
Commit message:

 Bump version to 1.1.5
 
Package: zellkonverter
Commit: c8fa40bf61ec482c38ee354c8bada861289923d2
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2021-03-05 14:27:00 +0100
Commit message:

 Export zellkonverterAnnDataEnv

Formally known as anndata_env
 
Package: zellkonverter
Commit: 3657ed063aff3d0147ddfba82974ae22a791b460
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2021-03-05 12:39:46 +0100
Commit message:

 Improve handling of list columns in SCE2AnnData()

Fixes #26
 
Package: zellkonverter
Commit: 33aae00b5505f6e8bb76f52aca9c88e4dbd789ef
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2021-03-05 10:41:18 +0100
Commit message:

 Convert metadata to dict in SCE2AnnData()

Fixes #40
 
Package: zellkonverter
Commit: e1b5dbd53c800bd3cc819c6d2eea09fad230ae13
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2021-03-05 09:59:23 +0100
Commit message:

 Merge branch 'sparse-h5ad'

* sparse-h5ad:
  Add SparseDataset support to NEWS
  Use HDF5Array::H5ADMatrix for all backed arrays
  Support H5AD-backed matrices during the conversion.
 
Package: zellkonverter
Commit: e96024da4625f80f8e1ef0175afcaa24d2383b55
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2021-03-05 09:57:24 +0100
Commit message:

 Add SparseDataset support to NEWS

Fixes #37, #41
See PR #41
 
Package: zellkonverter
Commit: 469a6525819879b4d5d8638fbc2b07b2b7083824
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2021-03-04 17:54:09 +0100
Commit message:

 Use HDF5Array::H5ADMatrix for all backed arrays

As suggested by @hpages https://github.com/theislab/zellkonverter/issues/37#issuecomment-787221247
 
Package: zellkonverter
Commit: 7cafcb7ae3c4728d46cf713d41f7e5d585ea8262
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2021-02-24 21:21:51 -0800
Commit message:

 Support H5AD-backed matrices during the conversion.
 
Package: zellkonverter
Commit: e8d96d949a0815247bdf55bc09750c7a0ce785b9
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2021-02-18 15:34:52 +0100
Commit message:

 Style code
 
Package: sojourner
Commit: ba2373846ee6d341aaa816fc94e9a08ba43a7a3b
Author: Lori Shepherd <lori.shepherd@roswellpark.org>
Date: 2021-03-05 08:01:40 -0500
Commit message:

 Package deprecation

  - unresponsive
 
Package: rawrr
Commit: ab8746c62f859db5bc0a871f1f1666478deeb27a
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 13:32:15 +0100
Commit message:

 version inc
 
Package: rawrr
Commit: cd8dc8c8822986964e78d9594c5e0b6ff532f398
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 13:31:47 +0100
Commit message:

 Rbuildignore rawrr.Rmd
 
Package: rawrr
Commit: 40a566ecdab933b7ee26e84b7a5edecf9e76eae7
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 12:23:31 +0100
Commit message:

 Replace EH4547 `file.link` by `file.copy` since some file systems seem to have problems with 'soft|hard' links.
 
Package: rawrr
Commit: d4ba9534ce1984debf4712d36e282999fda70183
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 11:39:34 +0100
Commit message:

 replace path
 
Package: rawrr
Commit: 047fe1bca5e6ff1ff62b0b0f4f4f9ea3768ee734
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 11:37:39 +0100
Commit message:

 SystemRequirement corrections and version inc
 
Package: rawrr
Commit: 0994e705bfe084b03a953026814252e694c2c04a
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 11:33:29 +0100
Commit message:

 vignette cosmetics
 
Package: rawrr
Commit: 45230714523c589858e5138199ba0b81b8b3dcca
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 11:28:56 +0100
Commit message:

 mono-runtime
 
Package: rawrr
Commit: 77e7436cac3ef21e5ebd66dc7957e1e0b4ba35ac
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 11:22:09 +0100
Commit message:

 test case for tic of EH4547
 
Package: rawrr
Commit: e00e9898d3d167e089de440dbd2fd2c5af35dcf2
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 11:12:01 +0100
Commit message:

 added sudo; replace brand by platform name; remove GitHub text
 
Package: rawrr
Commit: af712d745e97193eda87396117f51a620ae364bd
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 10:16:03 +0100
Commit message:

 RawFileReaderLicense.doc -> RawFileReaderLicense.txt
 
Package: rawrr
Commit: 5f2519f9f39f2cfe9a3679e6f62445cef33300a4
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 10:00:07 +0100
Commit message:

 added BinaryFiles
 
Package: rawrr
Commit: 4b69c6c1ca51d8f48830e75aed5b86fff9a2cf8b
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-05 09:55:14 +0100
Commit message:

 replace slash with file.path
 
Package: rawrr
Commit: 5d532f89739ca70d3837e6be313eac718a0f8b96
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-02 17:12:37 +0100
Commit message:

 fix typo
 
Package: rawrr
Commit: fea95a41e2e230a630a361c5c877e98d0a67b72d
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2021-03-02 17:05:52 +0100
Commit message:

 BiocStyle edit cosmetics
 
Package: multiSight
Commit: e4cb4541aa6e78ee9b044b994f90689dbd5cb04a
Author: Fjeanneret <florian.jeanneret@cea.fr>
Date: 2021-03-05 10:26:02 +0100
Commit message:

 Remove markdown
 
Package: multiSight
Commit: f556bd5990a8186ef7378923e03aa38412fd1051
Author: Fjeanneret <florian.jeanneret@cea.fr>
Date: 2021-03-05 10:22:45 +0100
Commit message:

 MIT to CeCILL
 
Package: cellmigRation
Commit: fc7b308bdb96271189c62522ee0e7eea001cfeeb
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-05 10:17:20 +0100
Commit message:

 Release 0.99.3

Removed Rproj file, which should not be on git as per BiocCheckGitClone() + version bump.
 
Package: cellmigRation
Commit: 9a748b52658205762c7819925d02703d5d4b7112
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-05 09:45:16 +0100
Commit message:

 Merge release 0.99.2
 
Package: cellmigRation
Commit: a516da006bdf09696fe11e88ab70e3811fbf993f
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-05 09:37:22 +0100
Commit message:

 Added final blank line
 
Package: cellmigRation
Commit: 0d8bd4450024fe5d885f95de6ba657bf65075a57
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-05 09:20:58 +0100
Commit message:

 Numbered notes
 
Package: cellmigRation
Commit: 8c28ee106a00bbe9332fa7ca9790105200bf6912
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-05 08:02:16 +0100
Commit message:

 Broke long text line
 
Package: cellmigRation
Commit: e292e5351c6de3a7896bdfd52cad8ad790ed469a
Author: Damiano Fantini <damiano.fantini@gmail.com>
Date: 2021-03-04 09:31:51 -0500
Commit message:

 Reverting to the latest vignette

Reverting to the latest vignette
 
Package: cellmigRation
Commit: 192799a908b40a6b65e4fcb0fed2e9a283bec163
Author: Damiano Fantini <damiano.fantini@gmail.com>
Date: 2021-03-04 09:12:16 -0500
Commit message:

 REF URL fix

REF URL fixed to: https://www.data-pulse.com/dev_site/cellmigration/ 
Package: cellmigRation
Commit: a93cb7e8001a3a5c527a64daf4efe8a6102410b3
Author: Damiano Fantini <damiano.fantini@gmail.com>
Date: 2021-03-04 09:11:22 -0500
Commit message:

 REF URL fixed

REF URL to: https://www.data-pulse.com/dev_site/cellmigration/ 
Package: cellmigRation
Commit: 9f580a3fae41b4c450bde07c2825411e1d25edbd
Author: Damiano Fantini <damiano.fantini@gmail.com>
Date: 2021-03-04 09:09:44 -0500
Commit message:

 REF URLs corrected (2x)

Updated 2x URL to the correct "https://www.data-pulse.com/dev_site/cellmigration/" 
Package: cellmigRation
Commit: 2ed22376b59a0e86fb5697d64ef1b8fd127b6562
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-04 08:43:39 +0100
Commit message:

 Changed version back to match Bioconductor submission
 
Package: cellmigRation
Commit: bce7d42c10a1b16a371b5e0c8b3185b992bd97f5
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-04 08:24:57 +0100
Commit message:

 Broke long text line
 
Package: cellmigRation
Commit: 18daba016dc95982e8b5c1cb91da83cecd03c99d
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-04 07:54:03 +0100
Commit message:

 Updated docs (including version)
 
Package: cellmigRation
Commit: b751c9f1524e4102fb68eb560e0fe042d811de61
Author: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: 2021-03-04 07:46:28 +0100
Commit message:

 Merge pull request #70 from ocbe-uio/issue-69-vignette

Set threads=1 on vignette 
Package: cellmigRation
Commit: 93f21b5b14b1060554133d7ce38da877c0eb2a65
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-03-04 06:56:33 +0100
Commit message:

 Merge branch 'issue-69-vignette' of https://github.com/ocbe-uio/cellmigRation into issue-69-vignette
 
Package: cellmigRation
Commit: cbf17a2a850b9d02502dd4b17e3db5ef06cf212e
Author: Damiano Fantini <damiano.fantini@gmail.com>
Date: 2021-03-02 19:39:06 -0500
Commit message:

 Updated Dataset Manuals

Added more info on datasets.
These files originate from Roxygen2 annotations in the all_extra or all_extra_v2 R file. 
Package: cellmigRation
Commit: 44d52dfe653bf3552b9a90585826567511e3a8a9
Author: Damiano Fantini <damiano.fantini@gmail.com>
Date: 2021-03-01 02:14:57 -0500
Commit message:

 Update all_extra.R

Added details about the datasets 
Package: cellmigRation
Commit: a1a018c054a501f00f939fe29072f2c5204b5a7a
Author: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: 2021-02-25 13:07:03 +0100
Commit message:

 Merge branch 'develop' into issue-69-vignette 
Package: cellmigRation
Commit: bf795d757235113e3124e698f1f400e56114fa43
Author: Damiano Fantini <damiano.fantini@gmail.com>
Date: 2021-02-23 20:31:52 -0500
Commit message:

 Wor-around for vignette multi-thread issue

- set all threads=1 (no parallelization at building);
- add reccommendations to paralleliza by setting the threads argument to a value bigger than 1 
Package: cellmigRation
Commit: cb8487c04457e383e854958439c2a14d135ff3e4
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-18 16:20:05 +0100
Commit message:

 Added note on parallelization
 
Package: cellmigRation
Commit: 81802a16437a1446c2a8a8865432783ff66afdfc
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-18 15:01:09 +0100
Commit message:

 Set threads to 1 (fixes #69), removed whitespace
 
Package: cellmigRation
Commit: 76f8a44289d2ac6890a98827bd61015f9bb87848
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-18 15:59:37 +0100
Commit message:

 Merge branch 'develop' of https://github.com/ocbe-uio/cellmigRation into develop
 
Package: cellmigRation
Commit: b15ce9a239fa2d8aefd47e840c1cd409481a5714
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-18 15:59:05 +0100
Commit message:

 Merge branch 'issue-36-tests' into develop
 
Package: cellmigRation
Commit: ea16c0ea21115f8a705fd3977fd177040db1db2c
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-18 15:56:50 +0100
Commit message:

 Add more unit tests
Added unit tests for several functions (fixes #36)
 
Package: cellmigRation
Commit: 03068bb157dd3d9ede205e0d21abcbbfdc0393c6
Author: Damiano Fantini <damiano.fantini@gmail.com>
Date: 2021-02-17 22:14:35 -0500
Commit message:

 removing tiff file

extdata not needed anymore 
Package: cellmigRation
Commit: 989fa211116e4d7b6c2db35d442f2cd512160998
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-17 10:16:17 +0100
Commit message:

 Merge branch 'clean-bioccheck' into develop
 
Package: cellmigRation
Commit: 065e56d7c8c701ff5a79927f991d8922993dd7ff
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-17 10:13:06 +0100
Commit message:

 Reimplemented testthat units as RUnit tests
 
Package: cellmigRation
Commit: 5086af904d8c6e87611eeb3fec54d19ebb9ae40f
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-17 10:06:27 +0100
Commit message:

 Deleted old vignette file
 
Package: cellmigRation
Commit: cb67ddb7fdc44f7c6704cc980c68096b8a30e592
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-17 07:52:41 +0100
Commit message:

 Merge branch 'fix-check' into develop
 
Package: cellmigRation
Commit: c1c6b8fdb3b404b8607eb579340c8668bb580991
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-17 07:52:29 +0100
Commit message:

 Added testthat dependency, removed unused dataset
 
Package: cellmigRation
Commit: 88ac6d110dac4e415a9c89c918988a84418ef316
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-16 16:38:20 +0100
Commit message:

 Version bump
 
Package: cellmigRation
Commit: d72b15d525e10a5ac1ccf3b849ecfb85df42036b
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-16 16:32:28 +0100
Commit message:

 Rebuilt all .Rd files
 
Package: cellmigRation
Commit: f38498fdda3554d5ef33613d1b5ee4970b94bdc2
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-16 16:16:22 +0100
Commit message:

 Solved conflicts between BiocNewVersion & develop
 
Package: cellmigRation
Commit: 98dcab0517afa585d733359758d53e578ec45be2
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-02-16 15:08:41 +0100
Commit message:

 Merge branch 'BiocNewVersion' of https://github.com/ocbe-uio/cellmigRation into BiocNewVersion
 
Package: cellmigRation
Commit: 13c6d37b6bfc34876e67cb2a7b3ecbde85f38797
Author: Damiano Fantini <damiano.fantini@gmail.com>
Date: 2021-02-16 01:15:04 -0500
Commit message:

 Fixed vignette code

Fixed few lines in the vignette that were raising an exception.
Briefly, in the former Vignette version, the 'x3' object was analyzed using wrong diameter and lnoise values -> no tracked cells -> exception. Argument values were updated. 
Package: cellmigRation
Commit: 18e8caece1400b413f28f8704fd7298c3f41bf3c
Author: dami82 <damiano.fantini@gmail.com>
Date: 2021-02-08 01:36:05 -0500
Commit message:

 Updated package version - bioc compatible
 
Package: cellmigRation
Commit: ffbabaa0081696f4049e0525dd18a1e6bcf02bab
Author: dami82 <damiano.fantini@gmail.com>
Date: 2021-02-08 01:29:46 -0500
Commit message:

 Updated package version - bioc compatible
 
Package: cellmigRation
Commit: ecf8b8f3c5da38beb9db1412c8f0d3ddaf9bcad3
Author: dami82 <damiano.fantini@gmail.com>
Date: 2021-02-08 01:27:49 -0500
Commit message:

 Removing old files and folders
 
Package: cellmigRation
Commit: 371126917d76ec416b76928910477a77f1f9a135
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-01-05 08:40:07 +0100
Commit message:

 Rebuilt README.md
 
Package: cellmigRation
Commit: 363ee5d3ec5e5b3b9d2219117e602230c1d0b307
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-01-05 08:39:59 +0100
Commit message:

 Added more warnings about editing README.md
 
Package: cellmigRation
Commit: 81bd3ffb6a85bbb521beab41d72f923b3bdc9ce1
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-01-05 08:39:32 +0100
Commit message:

 Added recipe for building README.md
 
Package: cellmigRation
Commit: 1990f444ac902d609bcf7c280d97b1c5e2aaa85f
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2021-01-05 08:38:56 +0100
Commit message:

 Added info on local Shiny app hosting
 
Package: cellmigRation
Commit: d19b34251038d6d167a1aec19c5061b066ecdd54
Author: dami82 <damiano.fantini@gmail.com>
Date: 2021-01-03 01:57:57 -0500
Commit message:

 Add new files
 
Package: cellmigRation
Commit: 97e91adf6814b28ba1d5e03feb5652823b80f976
Author: dami82 <damiano.fantini@gmail.com>
Date: 2021-01-03 01:56:32 -0500
Commit message:

 Remove old files
 
Package: cellmigRation
Commit: e6cae101d47da3c2bf5e4c4ef79042c79c58948e
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-12-07 10:00:44 +0100
Commit message:

 Ignoring deployment info
 
Package: cellmigRation
Commit: 79e447638eac2953665321c4c842dba8027cca73
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-12-07 09:58:30 +0100
Commit message:

 Updated deployment info
 
Package: cellmigRation
Commit: 7be0254f021f473567f0d491a181a8ffbe8bbd8a
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-12-07 09:57:54 +0100
Commit message:

 Improved formatting
 
Package: cellmigRation
Commit: 648a0751776472a9ebe3de9acb8ebfe1822eef7d
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-12-07 09:48:56 +0100
Commit message:

 Text improvements
 
Package: cellmigRation
Commit: 41800c408b169f2812c58d1357004e7de4d3a96f
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-12-07 09:48:38 +0100
Commit message:

 Added TODO
 
Package: cellmigRation
Commit: 6997bd6b8eb811f96488d60bd13338a11dab715f
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-12-07 09:48:04 +0100
Commit message:

 Fixed syntax
 
Package: cellmigRation
Commit: 4b1c582d8e6d02e40ffa124c5fec8ce165a100c6
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-12-07 09:17:45 +0100
Commit message:

 Merge branch 'issue-66' into develop (#66)
 
Package: cellmigRation
Commit: ba9b348a65d1966a8bf16b79f673ecf136e9b54d
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-12-07 09:17:32 +0100
Commit message:

 Removed redundant code
 
Package: cellmigRation
Commit: f9fa2ffa855ea75c418aec6e800ad136f0d18962
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-12-07 09:17:01 +0100
Commit message:

 "Improved text"
 
Package: cellmigRation
Commit: faaaac70f5a264b7961425ba0b662372c75c72a3
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-12-07 09:05:57 +0100
Commit message:

 Fixed deployment issues (#66)
 
Package: cellmigRation
Commit: 7de2e61c18659e17b307853adbd753a0c470dba3
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-11-16 10:41:59 +0100
Commit message:

 Merge branch 'split-shiny-files' into develop (issue #65)
 
Package: cellmigRation
Commit: fe6f91e6506af203bb244693e24b5aefe6fd04d5
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-11-16 10:40:15 +0100
Commit message:

 Renamed app.R as ui.R
 
Package: cellmigRation
Commit: 41e6f3c5b8edded999a5377503601e21fb4c64c0
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-11-16 10:39:28 +0100
Commit message:

 Split away server file
 
Package: cellmigRation
Commit: 36af5c08beebcfcd5654814b61eb0f4c3d765834
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-11-16 10:38:06 +0100
Commit message:

 Fixed port
 
Package: cellmigRation
Commit: c8dd5d75cacc1efea0fc4f22e7e1c013fd371729
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-11-16 10:25:55 +0100
Commit message:

 Moved Shiny deployment to Makefile
 
Package: cellmigRation
Commit: e36cb3a19c5efb6b76bd586075316ac421bb048d
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-11-16 10:15:05 +0100
Commit message:

 Fixed capitalization of cellmigRation
 
Package: cellmigRation
Commit: 3a80c6d7c2f60d846f8eead90ebf4c968b30d2c2
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-11-16 10:11:06 +0100
Commit message:

 Ignoring Makefile on package
 
Package: cellmigRation
Commit: ac366eb2ba6f8816e47ab39f4c83566d27b4e9ba
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-11-16 09:59:00 +0100
Commit message:

 Added Makefile
 
Package: cellmigRation
Commit: 004274f966535c4ec8ddffa4547eee7975f0d151
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-11-16 09:58:38 +0100
Commit message:

 Fixed syntax error
 
Package: cellmigRation
Commit: 55abd99382f6723808be0d3f3f4901f299771315
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-28 16:30:00 +0100
Commit message:

 Merge 4-space-indentation into develop (solves 2/2 of #61)
 
Package: cellmigRation
Commit: f60fb91ffdbd8e3681239f15cba9361c43a76afa
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-28 16:29:47 +0100
Commit message:

 Changed all indentation to 4 spaces
 
Package: cellmigRation
Commit: 504b39d529547c42d71537ef29fcef5c4e10e5a7
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-28 15:13:52 +0100
Commit message:

 Version bump (resolved 1/2 of issue #61)
 
Package: cellmigRation
Commit: 62537c326ca407d75b476f64d3f019a958d8fea9
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-28 15:13:08 +0100
Commit message:

 Merge branch 'break-wide-lines' into develop
 
Package: cellmigRation
Commit: c48abfa84dbdaf873d74602b23f820c87df98a8c
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-28 15:12:44 +0100
Commit message:

 Broken wide lines on vignette
 
Package: cellmigRation
Commit: 4b2932501fdac35ed645a99c7943d007cc7a847a
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-28 14:44:01 +0100
Commit message:

 Broken wide lines on man files (issue #61)
 
Package: cellmigRation
Commit: c42fa3ab29edcd1dd89e892c314ab3c03f6185cf
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-28 14:15:08 +0100
Commit message:

 Merge branch 'break-wide-lines' into develop
 
Package: cellmigRation
Commit: 6f2fae89be775fea37d9a0cdbad8e82499c63b5a
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-28 14:14:48 +0100
Commit message:

 Breaks wide lines on all .* files
 
Package: cellmigRation
Commit: 0abfdba6a9dc41ed6e86642f6c107e7fba6a0362
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 16:32:36 +0200
Commit message:

 Merge branch 'vignette' into develop
 
Package: cellmigRation
Commit: a925c056a443875fdcf6ad745a874a1e3cf24e35
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 16:31:49 +0200
Commit message:

 Some formatting improvements (issue #34)
 
Package: cellmigRation
Commit: 786a398e50d4ecd66defb457103bfe6cd36bdddc
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 16:29:53 +0200
Commit message:

 Added table of contents (issue #34)
 
Package: cellmigRation
Commit: ea7c2dacdb2ce049964fc37ccfddb80915431819
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 16:29:30 +0200
Commit message:

 Changed installation instructions (issue #34)
 
Package: cellmigRation
Commit: 459c1364580a8396d2c6faefca49a75b791058db
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 16:00:42 +0200
Commit message:

 Version bump
 
Package: cellmigRation
Commit: e3d24bd81b912213b4b396e14348094490262354
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 16:00:12 +0200
Commit message:

 Merge branch 'issue-57' into develop
 
Package: cellmigRation
Commit: 180618212f2c83484d038c9190353bce7cafaaff
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 15:59:58 +0200
Commit message:

 Fixed vapply on LinearConv2 (issue #57)
 
Package: cellmigRation
Commit: 1bbed99a2b13f572c9122a07405838e68ca5b80d
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 15:19:39 +0200
Commit message:

 Merge branch 'issue-58' into develop
 
Package: cellmigRation
Commit: 09025512ef8a7399a8c009df4cb67fb71d2b99c1
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 15:19:23 +0200
Commit message:

 Fixed vignette building (issue #58)
 
Package: cellmigRation
Commit: c7834c6609edf4915141caddc7a90ee8551bf5a3
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 13:48:44 +0200
Commit message:

 Merge pull request #41 from ocbe-uio/LoadTiff

Replaced sapply 
Package: cellmigRation
Commit: 002ec3792367e5f949d48b4afd7464a0971dbb8c
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 13:31:13 +0200
Commit message:

 Bumped build version
 
Package: cellmigRation
Commit: 66899fadda3417470c9a4a9fedd076403a006df7
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 13:29:21 +0200
Commit message:

 Merge branch 'solve-checkout-notes' into develop
 
Package: cellmigRation
Commit: 47b3cc13db93d26f0589c4a31470b89da59e2570
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 13:29:04 +0200
Commit message:

 Added line breaks to eliminate check note
 
Package: cellmigRation
Commit: 05adf51f46b792defcee5b1e4e9ef98ae9c7ce7b
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 13:28:40 +0200
Commit message:

 Excluding the inst folder from the package
 
Package: cellmigRation
Commit: 66f6609f570d1e72125168b046689ea6379d94b2
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 12:39:03 +0200
Commit message:

 Merge branch 'issue-32' into develop (fixes issue #32)
 
Package: cellmigRation
Commit: 6b9de83b78795a15cd38ddf44f1e1a279cb129c5
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 12:38:38 +0200
Commit message:

 Renamed NEWS file
 
Package: cellmigRation
Commit: cb7ae35afd207dbad0f9d08597b70384094621e5
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 12:27:12 +0200
Commit message:

 Merge branch 'issue-31' into develop (fixes #31)
 
Package: cellmigRation
Commit: 3bbf6dcbb8cdbd4a78766dc9e7eaab01748825f7
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 12:26:57 +0200
Commit message:

 Renamed function using period (issue #31)
 
Package: cellmigRation
Commit: 06ff563502cfd4cb96e42e4777536a65db8269c9
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 12:11:12 +0200
Commit message:

 Removed last sapply
 
Package: cellmigRation
Commit: ec641cb5447d2d646fdcb4b281c3ff9fb2ad91e7
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 12:09:20 +0200
Commit message:

 MOre fixes
 
Package: cellmigRation
Commit: 11272e84c4d37cada14ab595f6dcbe2e5358dcb7
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 12:05:02 +0200
Commit message:

 Fixed another sapply
 
Package: cellmigRation
Commit: 2d1f08b9b5477f92f9a59dfd3a024e39a44f4ac4
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 12:04:06 +0200
Commit message:

 Fixed another sapply
 
Package: cellmigRation
Commit: 867c051b6cf1bc1ae4ec3904ae4bbc7f1f09c680
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 12:03:04 +0200
Commit message:

 Another sapply in ForwardMigration
 
Package: cellmigRation
Commit: 94a01b54791e3d71134e94f46184b73cb5f1a791
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 12:02:08 +0200
Commit message:

 Another sapply in ForwardMigration
 
Package: cellmigRation
Commit: 8c33bfbe673c8e9b7669af6d88c63a1ffcf32247
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 12:01:02 +0200
Commit message:

 Small correction
 
Package: cellmigRation
Commit: d582673a7edc36959948f77c27a3545bd1f494d4
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 12:00:28 +0200
Commit message:

 Fixed a sapply in ForwardMigration
 
Package: cellmigRation
Commit: 8f0db3e914564d54a702e7bfd731b7ba4d921b23
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 11:59:18 +0200
Commit message:

 More rewriting
 
Package: cellmigRation
Commit: d700d1e77e97c367afa0e15f8120bff4d3c70f56
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 11:53:55 +0200
Commit message:

 Another sapply fix
 
Package: cellmigRation
Commit: 77febb13b04eab1c084c1b6f719c06db4bc752e6
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 11:51:01 +0200
Commit message:

 MOre sapply fixes
 
Package: cellmigRation
Commit: f0c07faf7546511d2e333a85b22163261f1df52b
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 11:46:43 +0200
Commit message:

 Another fix of sapply
 
Package: cellmigRation
Commit: c0f1cdc2705732e0969fb7d2bd757d2f536f8dac
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 11:43:38 +0200
Commit message:

 Replaced more sapply
 
Package: cellmigRation
Commit: 54ae6a4d01e5b929457da4ac5e20757af9c9bac2
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 11:36:23 +0200
Commit message:

 Replaced a bunch of sapplies
 
Package: cellmigRation
Commit: b3bcaeb9165262654ca4308523df84ba599c0e0e
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 11:30:03 +0200
Commit message:

 Another sapply
 
Package: cellmigRation
Commit: 0179cc2660d73df96062f9be4aae610652d4673d
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 11:27:32 +0200
Commit message:

 Merge branch 'develop' of https://github.com/ocbe-uio/cellmigRation into develop
 
Package: cellmigRation
Commit: c41fc8c08fd7016baaae523cb12034573f09b2da
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 11:27:19 +0200
Commit message:

 Fixed a sapply in LinearConv2
 
Package: cellmigRation
Commit: 3b3162369ec486e2f24192b6b2b4a88aad7fe90a
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-10-05 11:24:46 +0200
Commit message:

 Merge master' into develop due to mistake on PR base for #40
 
Package: cellmigRation
Commit: b22e1f33823afc08b217677bedd1f0fbb3fbdb2c
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:30:16 +0200
Commit message:

 Merge branch 'develop' of https://github.com/ocbe-uio/cellmigRation into develop
 
Package: cellmigRation
Commit: a45c12319f36393491bf0bf8b66606228125f004
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:30:01 +0200
Commit message:

 Another sapply fix
 
Package: cellmigRation
Commit: 2e1b2978ab104c6c977f498dc92cc3c2b1dff872
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:27:59 +0200
Commit message:

 Merge pull request #53 from ocbe-uio/wsaPreProcessing3

Wsa pre processing3 
Package: cellmigRation
Commit: 19086c80b571de72b5160ca3b8316a2732e82a76
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:27:37 +0200
Commit message:

 Merge pull request #52 from ocbe-uio/wsaPreProcessing2

Wsa pre processing2 
Package: cellmigRation
Commit: cae9952db659cf0f50a253ef006fa27742ef9fa5
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:27:18 +0200
Commit message:

 Merge pull request #51 from ocbe-uio/wsaPreProcessing

Wsa pre processing 
Package: cellmigRation
Commit: 7fcc1eb40e87f8b687403ed7d970213ea67d4fb4
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:26:59 +0200
Commit message:

 Merge pull request #50 from ocbe-uio/rmPreProcessing5

Rm pre processing5 
Package: cellmigRation
Commit: 597852df53289b580f212ff144c9a88cecef7540
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:26:37 +0200
Commit message:

 Merge pull request #49 from ocbe-uio/rmPreProcessing4

Rm pre processing4 
Package: cellmigRation
Commit: ee549b321d58fd0bda2091ddabc90bb351a66610
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:26:15 +0200
Commit message:

 Merge pull request #48 from ocbe-uio/rmPreProcessing3

Rm pre processing3 
Package: cellmigRation
Commit: 4ed1b3f2dced796a073fcf5c13635e626398f272
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:25:53 +0200
Commit message:

 Merge pull request #47 from ocbe-uio/rmPreProcessing2

Rm pre processing2 
Package: cellmigRation
Commit: 020f40feb229abcd40eb714e0c0ab9ba865429b9
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:25:31 +0200
Commit message:

 Merge pull request #46 from ocbe-uio/rmPreProcessing

Rm pre processing 
Package: cellmigRation
Commit: d7756b3b305562a5043e4a62d5558528265240f1
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:25:09 +0200
Commit message:

 Merge pull request #45 from ocbe-uio/TrackParam

Track param 
Package: cellmigRation
Commit: f54c3dc177b6464703b55ce3c334e39c46005424
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:24:42 +0200
Commit message:

 Merge pull request #44 from ocbe-uio/optimizeparams

Optimizeparams 
Package: cellmigRation
Commit: 125a1d1933e2af28fce454eaacce43a4fdf58960
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:24:13 +0200
Commit message:

 Merge pull request #43 from ocbe-uio/track_fix

Track fix 
Package: cellmigRation
Commit: bfb23cedf54ea7ecbb05c6245ba654c3322cea34
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:23:46 +0200
Commit message:

 Merge pull request #42 from ocbe-uio/cntrd_fix

Cntrd fix 
Package: cellmigRation
Commit: a208b687921c1fd5af1a862987f6ca73a7ce2f74
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:22:31 +0200
Commit message:

 Merge pull request #56 from ocbe-uio/wsaPreProcessing6

Wsa pre processing6 
Package: cellmigRation
Commit: c66a1e4b997b0a83ddd3a919166c5321a19c4c1e
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:22:12 +0200
Commit message:

 Merge pull request #55 from ocbe-uio/wsaPreProcessing5

Wsa pre processing5 
Package: cellmigRation
Commit: 40e332ae38263d79cea191e83adff6defd596863
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:01:24 +0200
Commit message:

 Another fix
 
Package: cellmigRation
Commit: ea7ceed5d1bc8b0aabc1343ca6c81228a1693551
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 10:00:05 +0200
Commit message:

 another fix
 
Package: cellmigRation
Commit: a6bfc08952085e1d57d1a5eb3c8a505b07750a60
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:58:12 +0200
Commit message:

 Another fix
 
Package: cellmigRation
Commit: 3c7c2dc94d8d4545a0980d11f411abd657bf4124
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:56:11 +0200
Commit message:

 New fix
 
Package: cellmigRation
Commit: 1ce29fbaa4dce6ce3af7e648598586d7407341db
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:53:36 +0200
Commit message:

 Second replacement of sapply in wsaPreProcessing
 
Package: cellmigRation
Commit: e9a7d610470f07cac2b2ecd597f1f8d5891c798e
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:51:30 +0200
Commit message:

 Replaced a sapply in wsaPreProcessing
 
Package: cellmigRation
Commit: 32dfe93fe148d5d87fcad5321a8c154a3b2c72e1
Author: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: 2020-10-05 09:50:14 +0200
Commit message:

 Merge pull request #40 from ocbe-uio/visualizeTrcks

Fix in visualizeTrcks 
Package: cellmigRation
Commit: ab61ce53b8854d30c252a51b1022b875b1f948af
Author: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: 2020-10-05 09:50:14 +0200
Commit message:

 Merge pull request #40 from ocbe-uio/visualizeTrcks

Fix in visualizeTrcks 
Package: cellmigRation
Commit: 80df8cb916f1e6655c0b9482ed839406c1e3408a
Author: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: 2020-10-05 09:49:21 +0200
Commit message:

 Merge pull request #39 from ocbe-uio/VisualizeImg

Fix in VisualizeImg 
Package: cellmigRation
Commit: 60713e084df6ac2f344e57633e14cb4d34dbee03
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:48:06 +0200
Commit message:

 Final two sapply-s replaced in rmPreProcessing
 
Package: cellmigRation
Commit: 74e8489b5999dad6eaf50a4e9916ed28488cdd0f
Author: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: 2020-10-05 09:47:04 +0200
Commit message:

 Merge pull request #38 from ocbe-uio/review_fix_oystein

vapply and seq_len fixes in LinearConv2 
Package: cellmigRation
Commit: b1a25c470ce0f526321e67f33292c02865d85ffc
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:44:08 +0200
Commit message:

 Another replacement of sapply in rmPreProcessing
 
Package: cellmigRation
Commit: 3cfe916143eabe740a92204b1e7f552eb491ac55
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:41:44 +0200
Commit message:

 Another fix in rmPreProcessing
 
Package: cellmigRation
Commit: 2e94980dd8757bd017ca440d56f9c377bca6a8eb
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:38:52 +0200
Commit message:

 Another fix in rmPreprocessing, replacing sapply
 
Package: cellmigRation
Commit: cc28149aac63ec51ce99b59a09434e963e1c0f98
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:35:02 +0200
Commit message:

 First fix of sapply in rmPreProcessing
 
Package: cellmigRation
Commit: 4f8c437e875e0af4c08551f7cad430debd0fbdd8
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:28:41 +0200
Commit message:

 Removed a sapply in CellTracker
 
Package: cellmigRation
Commit: 4b48ef02c597729cb561e547faa871f9476cc42b
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:16:47 +0200
Commit message:

 fix in OptimizeParams
 
Package: cellmigRation
Commit: d117cfb49e8036d197d740ad702647c9a9a5a77a
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 09:08:31 +0200
Commit message:

 Fix in track()
 
Package: cellmigRation
Commit: efe6d705473acdac6018589865bfbd29a91d3ded
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 08:52:59 +0200
Commit message:

 Update .gitignore 
Package: cellmigRation
Commit: 00aadfb8b3d6f908908dd7ff224c5eeffb5d4ca3
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 08:51:22 +0200
Commit message:

 Fix in cntrd
 
Package: cellmigRation
Commit: 229657406672789f6a5445b06c27111791fd9200
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 08:47:23 +0200
Commit message:

 Updated gitignore
 
Package: cellmigRation
Commit: 555439779ddd36a137cd757aae477ff2b0dc5f8b
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 08:40:58 +0200
Commit message:

 Replaced sapply
 
Package: cellmigRation
Commit: 67712607c7bf6ec0f4a61e17ae33670d1922ff94
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 08:34:05 +0200
Commit message:

 Fix in visualizeTrcks
 
Package: cellmigRation
Commit: 71bc5b677686868a1c1e80b79ce18cad597c0405
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 08:34:05 +0200
Commit message:

 Fix in visualizeTrcks
 
Package: cellmigRation
Commit: ea0a715ffd02552a81a32a971f0f2e28a75e7d36
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 08:30:43 +0200
Commit message:

 Fix in VisualizeImg
 
Package: cellmigRation
Commit: 612e007860491b91b7dcad65fa4d31adbf39342c
Author: Øystein Sørensen <oystein_sorensen@hotmail.com>
Date: 2020-10-05 08:08:31 +0200
Commit message:

 vapply and seq_len fixes in LinearConv2
 
Package: cellmigRation
Commit: 8e4ecaa29ce9a436a38c03e0031affed1d9febcb
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-09-30 10:41:25 +0200
Commit message:

 Merge branch 'issue-30' into develop. Solves issue #30
 
Package: cellmigRation
Commit: edf4f17cf990858fd53813f41b036ca4c2cf81e1
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-09-30 10:40:22 +0200
Commit message:

 Changed biocViews
 
Package: cellmigRation
Commit: ce64f3b823703fe112f806bc140650977051312b
Author: Waldir Leoncio <waldir.leoncio@gmail.com>
Date: 2020-09-29 13:38:11 +0200
Commit message:

 Version bump
 
Package: cellmigRation
Commit: 1187fc142c17e45a037274bec3a88e420e824581
Author: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: 2020-09-29 13:34:43 +0200
Commit message:

 Merge branch 'release-1.0' into develop
 
Package: cellmigRation
Commit: 570eaeeda48b63e6b164b3638289ba38e4af5fee
Author: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: 2020-09-04 16:56:39 +0200
Commit message:

 Merge branch 'release-1.0'
 
Package: cellmigRation
Commit: e8d4724c26af3fd38afd9c12ccc4bf350891338f
Author: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: 2020-09-04 16:30:27 +0200
Commit message:

 Version bump
 
Package: cellmigRation
Commit: d26b6c9df8b8788a9cf2a67b3945f9cf78a33747
Author: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: 2020-09-04 16:30:22 +0200
Commit message:

 Moved datasets to aux (offline) folder
 

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