Orchestrating Hi-C analysis with Bioconductor

Package: OHCA
Authors: Jacques Serizay [aut, cre]
Compiled: 2024-01-29
Package version: 0.99.7
R version: R Under development (unstable) (2024-01-16 r85808)
BioC version: 3.19
License: MIT + file LICENSE

Welcome

This is the landing page of the β€œOrchestrating Hi-C analysis with Bioconductor” book. The primary aim of this book is to introduce the R user to Hi-C analysis. This book starts with key concepts important for the analysis of chromatin conformation capture and then presents Bioconductor tools that can be leveraged to process, analyze, explore and visualize Hi-C data.

Table of contents

This book is divided in three parts:

Part I: Introduction to Hi-C analysis

Part II: In-depth Hi-C analysis

Part III: Hi-C analysis workflows

Installation & requirements

General audience

This books aims to demonstrate how to pre-process, parse and investigate Hi-C data in R. For this reason, a significant portion of this book consists of executable R code chunks. To be able to reproduce the examples demonstrated in this book and go further in the analysis of your real datasets, you will need to rely on several dependencies.

  • R >= 4.3 is required. You can check R version by typing version in an R console or in RStudio. If you do not have R >= 4.3 installed, you will need to update your R version, as most extra dependencies will require R >= 4.3.

Detailed instructions are available here to install R 4.3 on a Linux machine (Ubuntu 22.04).

Briefly, to install pre-compiled version of R 4.3.0:

# This is adapted from Posit (https://docs.posit.co/resources/install-r/)
export R_VERSION=4.3.0

# Install curl and gdebi-core
sudo apt update -qq
sudo apt install curl gdebi-core -y

# Fetching the `.deb` install file from Posit repository
curl -O https://cdn.rstudio.com/r/ubuntu-2204/pkgs/r-${R_VERSION}_1_amd64.deb

# Install R
sudo gdebi r-${R_VERSION}_1_amd64.deb --non-interactive -q

# Optional: create a symlink to add R to your PATH
sudo ln -s /opt/R/${R_VERSION}/bin/R /usr/local/bin/R

If you have some issues when installing the Hi-C packages listed below, you may need to install the following system libraries:

sudo apt update -qq
sudo apt install -y \
    automake make cmake fort77 gfortran \
    bzip2 unzip ftp build-essential \
    libc6 libreadline-dev \
    libpng-dev libjpeg-dev libtiff-dev \
    libx11-dev libxt-dev x11-common \
    libharfbuzz-dev libfribidi-dev \
    libfreetype6-dev libfontconfig1-dev \
    libbz2-dev liblzma-dev libtool \
    libxml2 libxml2-dev \
    libzstd-dev zlib1g-dev \
    libdb-dev libglu1-mesa-dev \
    libncurses5-dev libghc-zlib-dev libncurses-dev \
    libpcre3-dev libxml2-dev libblas-dev libzmq3-dev \
    libssl-dev libcurl4-openssl-dev \
    libgsl-dev libeigen3-dev libboost-all-dev \
    libgtk2.0-dev xvfb xauth xfonts-base apt-transport-https \
    libhdf5-dev libudunits2-dev libgdal-dev libgeos-dev \
    libproj-dev libnode-dev libmagick++-dev
  • Bioconductor >= 3.18 is also required. You can check whether Bioconductor is available and its version in R by typing BiocManager::version(). If you do not have BiocManager >= 3.18 installed, you will need to update it as follows:
if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install(version = "3.18")
  • You will also need important packages, which will be described in length in this book. The following R code will set up most of the extra dependencies:
BiocManager::install("HiCExperiment", ask = FALSE)
BiocManager::install("HiCool", ask = FALSE)
BiocManager::install("HiContacts", ask = FALSE)
BiocManager::install("HiContactsData", ask = FALSE)
BiocManager::install("fourDNData", ask = FALSE)
BiocManager::install("DNAZooData", ask = FALSE)

Developers

For developers or advanced R users, the devel versions of these packages can be installed by installing Bioc devel version prior to package installation:

BiocManager::install(version = "devel")
BiocManager::install("HiCExperiment", ask = FALSE)
BiocManager::install("HiCool", ask = FALSE)
BiocManager::install("HiContacts", ask = FALSE)
BiocManager::install("HiContactsData", ask = FALSE)
BiocManager::install("fourDNData", ask = FALSE)
BiocManager::install("DNAZooData", ask = FALSE)

Docker image

If you have docker installed, the easiest approach would be to run the following command in a shell terminal:

docker run -it ghcr.io/js2264/ohca:latest R

This will fetch a docker image with the latest development versions of the aforementioned packages pre-installed, and initiate an interactive R session.

Reproducibility

Building book

The OHCA book has been rendered in R thanks to a number of packages, including but not only:

  • BiocBook
  • devtools
  • quarto
  • rebook

To build this book locally, you can run:

git clone git@github.com:js2264/OHCA.git && cd OHCA
quarto render
Warning

All dependencies listed above will be required!

The actual rendering of this book is done by GitHub Actions, and the rendered static website is hosted by GitHub Pages.

Session info

sessioninfo::session_info(
    installed.packages()[,"Package"], 
    include_base = TRUE
)
##  ─ Session info ────────────────────────────────────────────────────────────
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##   os       Ubuntu 22.04.3 LTS
##   system   x86_64, linux-gnu
##   ui       X11
##   language (EN)
##   collate  C
##   ctype    en_US.UTF-8
##   tz       America/New_York
##   date     2024-01-29
##   pandoc   2.7.3 @ /usr/bin/ (via rmarkdown)
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##   AshkenazimSonChr21                              1.33.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ashr                                            2.2-63         2023-08-21 [2] CRAN (R 4.4.0)
##   ASICS                                           2.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ASICSdata                                       1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   AsioHeaders                                     1.22.1-2       2022-12-08 [2] CRAN (R 4.4.0)
##   askpass                                         1.2.0          2023-09-03 [2] CRAN (R 4.4.0)
##   ASpli                                           2.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   assertive.base                                  0.0-9          2021-02-08 [2] CRAN (R 4.4.0)
##   assertive.files                                 0.0-2          2016-05-10 [2] CRAN (R 4.4.0)
##   assertive.numbers                               0.0-2          2016-05-09 [2] CRAN (R 4.4.0)
##   assertive.reflection                            0.0-5          2020-07-31 [2] CRAN (R 4.4.0)
##   assertive.sets                                  0.0-3          2016-12-30 [2] CRAN (R 4.4.0)
##   assertthat                                      0.2.1          2019-03-21 [2] CRAN (R 4.4.0)
##   AssessORF                                       1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   AssessORFData                                   1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ASSET                                           2.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ASSIGN                                          1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ASURAT                                          1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ATACseqQC                                       1.27.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ATACseqTFEA                                     1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   atena                                           1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ath1121501cdf                                   2.18.0         2024-01-18 [2] Bioconductor
##   atSNP                                           1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   attempt                                         0.3.1          2020-05-03 [2] CRAN (R 4.4.0)
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##   AUCell                                          1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   automap                                         1.1-9          2023-03-23 [2] CRAN (R 4.4.0)
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##   aws                                             2.5-3          2023-06-21 [2] CRAN (R 4.4.0)
##   aws.s3                                          0.3.21         2020-04-07 [2] CRAN (R 4.4.0)
##   aws.signature                                   0.6.0          2020-06-01 [2] CRAN (R 4.4.0)
##   awsMethods                                      1.1-1          2019-05-08 [2] CRAN (R 4.4.0)
##   awst                                            1.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   AzureAuth                                       1.3.3          2021-09-13 [2] CRAN (R 4.4.0)
##   AzureGraph                                      1.3.4          2023-09-06 [2] CRAN (R 4.4.0)
##   AzureRMR                                        2.4.4          2023-09-21 [2] CRAN (R 4.4.0)
##   AzureStor                                       3.7.0          2022-05-25 [2] CRAN (R 4.4.0)
##   BaalChIP                                        1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   babelgene                                       22.9           2022-09-29 [2] CRAN (R 4.4.0)
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##   backports                                       1.4.1          2021-12-13 [2] CRAN (R 4.4.0)
##   bacon                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BADER                                           1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   badger                                          0.2.3          2023-01-28 [2] CRAN (R 4.4.0)
##   BadRegionFinder                                 1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BAGS                                            2.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ballgown                                        2.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bambu                                           3.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bamlss                                          1.2-2          2023-10-29 [2] CRAN (R 4.4.0)
##   bamsignals                                      1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BANDITS                                         1.19.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bandle                                          1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Banksy                                          0.99.6         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   banocc                                          1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   barcodetrackR                                   1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   base                                          * 4.4.0          2024-01-16 [3] local
##   base64                                          2.0.1          2022-08-19 [2] CRAN (R 4.4.0)
##   base64enc                                       0.1-3          2015-07-28 [2] CRAN (R 4.4.0)
##   base64url                                       1.4            2018-05-14 [2] CRAN (R 4.4.0)
##   basecallQC                                      1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   baseline                                        1.3-5          2023-11-18 [2] CRAN (R 4.4.0)
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##   Basic4Cseq                                      1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BASiCS                                          2.15.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BASiCStan                                       1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BasicSTARRseq                                   1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   basilisk                                        1.15.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   basilisk.utils                                  1.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   batchelor                                       1.19.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BatchJobs                                       1.9            2022-03-21 [2] CRAN (R 4.4.0)
##   BatchQC                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   batchtools                                      0.9.17         2023-04-20 [2] CRAN (R 4.4.0)
##   BayesKnockdown                                  1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bayesm                                          3.1-6          2023-09-23 [2] CRAN (R 4.4.0)
##   BayesSpace                                      1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bayestestR                                      0.13.1         2023-04-07 [2] CRAN (R 4.4.0)
##   bayNorm                                         1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BB                                              2019.10-1      2019-10-18 [2] CRAN (R 4.4.0)
##   BBCAnalyzer                                     1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BBmisc                                          1.13           2022-09-29 [2] CRAN (R 4.4.0)
##   bbmle                                           1.0.25.1       2023-12-09 [2] CRAN (R 4.4.0)
##   bbotk                                           0.7.3          2023-11-13 [2] CRAN (R 4.4.0)
##   bcellViper                                      1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   BCRANK                                          1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bcSeq                                           1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BDMMAcorrect                                    1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bdsmatrix                                       1.3-6          2022-06-03 [2] CRAN (R 4.4.0)
##   beachmat                                        2.19.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   beachmat.hdf5                                   1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   beadarray                                       2.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   beadarrayExampleData                            1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   beadarraySNP                                    1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BeadArrayUseCases                               1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   BeadDataPackR                                   1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BeadSorted.Saliva.EPIC                          1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   beanplot                                        1.3.1          2022-04-09 [2] CRAN (R 4.4.0)
##   BEARscc                                         1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BEAT                                            1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BEclear                                         2.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BEDMatrix                                       2.0.3          2020-07-08 [2] CRAN (R 4.4.0)
##   beer                                            1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   beeswarm                                        0.4.0          2021-06-01 [2] CRAN (R 4.4.0)
##   bench                                           1.1.3          2023-05-04 [2] CRAN (R 4.4.0)
##   benchdamic                                      1.9.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   benchmarkfdrData2019                            1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   benchmarkme                                     1.0.8          2022-06-12 [2] CRAN (R 4.4.0)
##   benchmarkmeData                                 1.0.4          2020-04-23 [2] CRAN (R 4.4.0)
##   berryFunctions                                  1.22.0         2023-04-12 [2] CRAN (R 4.4.0)
##   BERT                                            0.99.15        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bestNormalize                                   1.9.1          2023-08-18 [2] CRAN (R 4.4.0)
##   beta7                                           1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   betaHMM                                         0.99.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   betareg                                         3.1-4          2021-02-09 [2] CRAN (R 4.4.0)
##   bezier                                          1.1.2          2018-12-14 [2] CRAN (R 4.4.0)
##   BG2                                             1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BgeeCall                                        1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BgeeDB                                          2.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bgx                                             1.69.0         2024-01-17 [2] Bioconductor 3.19 (R 4.4.0)
##   BH                                              1.84.0-0       2024-01-10 [2] CRAN (R 4.4.0)
##   BHC                                             1.55.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiasedUrn                                       2.0.11         2023-08-19 [2] CRAN (R 4.4.0)
##   BiBitR                                          0.3.1          2017-06-30 [2] CRAN (R 4.4.0)
##   bibtex                                          0.5.1          2023-01-26 [2] CRAN (R 4.4.0)
##   BicARE                                          1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biclust                                         2.0.3.1        2023-05-19 [2] CRAN (R 4.4.0)
##   BiFET                                           1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biganalytics                                    1.1.21         2020-06-09 [2] CRAN (R 4.4.0)
##   bigassertr                                      0.1.6          2023-01-10 [2] CRAN (R 4.4.0)
##   bigD                                            0.2.0          2022-09-05 [2] CRAN (R 4.4.0)
##   BiGGR                                           1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biglm                                           0.9-2.1        2020-11-27 [2] CRAN (R 4.4.0)
##   bigmelon                                        1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bigmemory                                       4.6.4          2024-01-09 [2] CRAN (R 4.4.0)
##   bigmemory.sri                                   0.1.8          2024-01-10 [2] CRAN (R 4.4.0)
##   bigparallelr                                    0.3.2          2021-10-02 [2] CRAN (R 4.4.0)
##   bigreadr                                        0.2.5          2022-12-06 [2] CRAN (R 4.4.0)
##   bigrquery                                       1.5.0          2024-01-22 [2] CRAN (R 4.4.0)
##   bigsnpr                                         1.12.2         2023-03-28 [2] CRAN (R 4.4.0)
##   bigsparser                                      0.6.1          2022-06-07 [2] CRAN (R 4.4.0)
##   bigstatsr                                       1.5.12         2022-10-14 [2] CRAN (R 4.4.0)
##   bigutilsr                                       0.3.4          2021-04-13 [2] CRAN (R 4.4.0)
##   billboarder                                     0.4.1          2023-09-29 [2] CRAN (R 4.4.0)
##   BindingSiteFinder                               2.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   binom                                           1.1-1.1        2022-05-02 [2] CRAN (R 4.4.0)
##   binr                                            1.1.1          2022-06-26 [2] CRAN (R 4.4.0)
##   bio3d                                           2.4-4          2022-10-26 [2] CRAN (R 4.4.0)
##   bioassayR                                       1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Biobase                                         2.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biobroom                                        1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biobtreeR                                       1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bioCancer                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BioCartaImage                                   1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocBaseUtils                                   1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocBook                                        1.1.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocBookDemo                                    1.1.3          2024-01-29 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocCheck                                       1.39.21        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocFHIR                                        1.5.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocFileCache                                   2.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocGenerics                                    0.49.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biocGraph                                       1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocHail                                        1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocHubsShiny                                   1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocIO                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocManager                                     1.30.22        2023-08-08 [2] CRAN (R 4.4.0)
##   BiocMetaWorkflow                                1.25.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocNeighbors                                   1.21.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocOncoTK                                      1.23.0         2024-01-22 [2] Bioconductor 3.19 (R 4.4.0)
##   BioCor                                          1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocParallel                                    1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocPkgTools                                    1.21.6         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocSet                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocSingular                                    1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocSklearn                                     1.25.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocStyle                                       2.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biocthis                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocVersion                                     3.19.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biocViews                                       1.71.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiocWorkflowTools                               1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biodb                                           1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biodbChebi                                      1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biodbExpasy                                     1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biodbHmdb                                       1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biodbKegg                                       1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biodbLipidmaps                                  1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biodbNcbi                                       1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biodbNci                                        1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biodbUniprot                                    1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bioDist                                         1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BioImageDbs                                     1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   BioMark                                         0.4.5          2015-09-07 [2] CRAN (R 4.4.0)
##   biomaRt                                         2.59.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BioMartGOGeneSets                               0.99.11        2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   biomartr                                        1.0.7          2023-12-02 [2] CRAN (R 4.4.0)
##   biomformat                                      1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BioMVCClass                                     1.71.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biomvRCNS                                       1.43.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BioNAR                                          1.5.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BioNERO                                         1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BioNet                                          1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bionetdata                                      1.1            2022-09-12 [2] CRAN (R 4.4.0)
##   BioNetStat                                      1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BioPlex                                         1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   BioQC                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biosigner                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Biostrings                                      2.71.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BioTIP                                          1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biotmle                                         1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biotmleData                                     1.27.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   biovizBase                                      1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BiRewire                                        3.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biscuiteer                                      1.17.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   biscuiteerData                                  1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   BiSeq                                           1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BisqueRNA                                       1.0.5          2021-05-23 [2] CRAN (R 4.4.0)
##   bit                                             4.0.5          2022-11-15 [2] CRAN (R 4.4.0)
##   bit64                                           4.0.5          2020-08-30 [2] CRAN (R 4.4.0)
##   bitops                                          1.0-7          2021-04-24 [2] CRAN (R 4.4.0)
##   biwt                                            1.0.1          2022-06-13 [2] CRAN (R 4.4.0)
##   blacksheepr                                     1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bladderbatch                                    1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   BlandAltmanLeh                                  0.3.1          2015-12-23 [2] CRAN (R 4.4.0)
##   blastula                                        0.3.4          2023-09-23 [2] CRAN (R 4.4.0)
##   blima                                           1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   blimaTestingData                                1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   BLMA                                            1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   blme                                            1.0-5          2021-01-05 [2] CRAN (R 4.4.0)
##   blob                                            1.2.4          2023-03-17 [2] CRAN (R 4.4.0)
##   blockmodeling                                   1.1.5          2023-08-23 [2] CRAN (R 4.4.0)
##   BloodCancerMultiOmics2017                       1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   BloodGen3Module                                 1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bluster                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BMA                                             3.18.17        2022-04-22 [2] CRAN (R 4.4.0)
##   bmp                                             0.3            2017-09-11 [2] CRAN (R 4.4.0)
##   bnbc                                            1.25.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bnem                                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bnlearn                                         4.9.1          2023-12-05 [2] CRAN (R 4.4.0)
##   bnstruct                                        1.0.15         2024-01-09 [2] CRAN (R 4.4.0)
##   bnviewer                                        0.1.6          2020-09-14 [2] CRAN (R 4.4.0)
##   BOBaFIT                                         1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bodymapRat                                      1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   bold                                            1.3.0          2023-05-02 [2] CRAN (R 4.4.0)
##   bookdown                                        0.37           2023-12-01 [2] CRAN (R 4.4.0)
##   BoolNet                                         2.1.9          2023-10-02 [2] CRAN (R 4.4.0)
##   boot                                            1.3-28.1       2022-11-22 [3] CRAN (R 4.4.0)
##   bootstrap                                       2019.6         2019-06-17 [2] CRAN (R 4.4.0)
##   borealis                                        1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BP4RNAseq                                       1.13.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   BPRMeth                                         1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BRAIN                                           1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   brainflowprobes                                 1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   branchpointer                                   1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   breakaway                                       4.8.4          2022-11-22 [2] CRAN (R 4.4.0)
##   breakpointR                                     1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   breakpointRdata                                 1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   breastCancerMAINZ                               1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   breastCancerNKI                                 1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   breastCancerTRANSBIG                            1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   breastCancerUNT                                 1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   breastCancerUPP                                 1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   breastCancerVDX                                 1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   brendaDb                                        1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   brew                                            1.0-10         2023-12-16 [2] CRAN (R 4.4.0)
##   brgedata                                        1.25.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   BRGenomics                                      1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   brglm                                           0.7.2          2021-04-22 [2] CRAN (R 4.4.0)
##   BridgeDbR                                       2.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   brio                                            1.1.4          2023-12-10 [2] CRAN (R 4.4.0)
##   BRISC                                           1.0.5          2022-04-29 [2] CRAN (R 4.4.0)
##   bronchialIL13                                   1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   broom                                           1.0.5          2023-06-09 [2] CRAN (R 4.4.0)
##   broom.helpers                                   1.14.0         2023-08-07 [2] CRAN (R 4.4.0)
##   broom.mixed                                     0.2.9.4        2022-04-17 [2] CRAN (R 4.4.0)
##   BrowserViz                                      2.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bs4Dash                                         2.3.3          2024-01-23 [2] CRAN (R 4.4.0)
##   BSDA                                            1.2.2          2023-09-18 [2] CRAN (R 4.4.0)
##   BSgenome                                        1.71.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BSgenome.Athaliana.TAIR.TAIR9                   1.3.1000       2024-01-16 [2] Bioconductor
##   BSgenome.Btaurus.UCSC.bosTau6                   1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Btaurus.UCSC.bosTau6.masked            1.3.99         2024-01-16 [2] Bioconductor
##   BSgenome.Celegans.UCSC.ce10                     1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Celegans.UCSC.ce11                     1.4.2          2024-01-16 [2] Bioconductor
##   BSgenome.Celegans.UCSC.ce2                      1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Dmelanogaster.UCSC.dm3                 1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Dmelanogaster.UCSC.dm6                 1.4.1          2024-01-16 [2] Bioconductor
##   BSgenome.Drerio.UCSC.danRer10                   1.4.2          2024-01-16 [2] Bioconductor
##   BSgenome.Drerio.UCSC.danRer7                    1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Ecoli.NCBI.20080805                    1.3.1000       2024-01-16 [2] Bioconductor
##   BSgenome.Ggallus.UCSC.galGal3                   1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Hsapiens.1000genomes.hs37d5            0.99.1         2024-01-16 [2] Bioconductor
##   BSgenome.Hsapiens.NCBI.GRCh38                   1.3.1000       2024-01-16 [2] Bioconductor
##   BSgenome.Hsapiens.UCSC.hg18                     1.3.1000       2024-01-16 [2] Bioconductor
##   BSgenome.Hsapiens.UCSC.hg18.masked              1.3.99         2024-01-16 [2] Bioconductor
##   BSgenome.Hsapiens.UCSC.hg19                     1.4.3          2024-01-16 [2] Bioconductor
##   BSgenome.Hsapiens.UCSC.hg19.masked              1.3.993        2024-01-16 [2] Bioconductor
##   BSgenome.Hsapiens.UCSC.hg38                     1.4.5          2024-01-16 [2] Bioconductor
##   BSgenome.Hsapiens.UCSC.hg38.masked              1.4.5          2024-01-16 [2] Bioconductor
##   BSgenome.Mmulatta.UCSC.rheMac10                 1.4.2          2024-01-16 [2] Bioconductor
##   BSgenome.Mmusculus.UCSC.mm10                    1.4.3          2024-01-16 [2] Bioconductor
##   BSgenome.Mmusculus.UCSC.mm10.masked             1.4.3          2024-01-16 [2] Bioconductor
##   BSgenome.Mmusculus.UCSC.mm8                     1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Mmusculus.UCSC.mm8.masked              1.3.99         2024-01-16 [2] Bioconductor
##   BSgenome.Mmusculus.UCSC.mm9                     1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Mmusculus.UCSC.mm9.masked              1.3.99         2024-01-16 [2] Bioconductor
##   BSgenome.Rnorvegicus.UCSC.rn4                   1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Rnorvegicus.UCSC.rn5                   1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Rnorvegicus.UCSC.rn5.masked            1.3.99         2024-01-16 [2] Bioconductor
##   BSgenome.Rnorvegicus.UCSC.rn6                   1.4.1          2024-01-16 [2] Bioconductor
##   BSgenome.Rnorvegicus.UCSC.rn7                   1.4.3          2024-01-16 [2] Bioconductor
##   BSgenome.Scerevisiae.UCSC.sacCer1               1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Scerevisiae.UCSC.sacCer2               1.4.0          2024-01-16 [2] Bioconductor
##   BSgenome.Scerevisiae.UCSC.sacCer3               1.4.0          2024-01-16 [2] Bioconductor
##   BSgenomeForge                                   1.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bslib                                           0.6.1          2023-11-28 [2] CRAN (R 4.4.0)
##   bsplus                                          0.1.4          2022-11-16 [2] CRAN (R 4.4.0)
##   bsseq                                           1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bsseqData                                       0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   BubbleTree                                      2.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BufferedMatrix                                  1.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BufferedMatrixMethods                           1.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bugsigdbr                                       1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BUMHMM                                          1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   bumphunter                                      1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BumpyMatrix                                     1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BUS                                             1.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BUScorrect                                      1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BUSpaRse                                        1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   BUSseq                                          1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   butcher                                         0.3.3          2023-08-23 [2] CRAN (R 4.4.0)
##   BWStest                                         0.2.3          2023-10-10 [2] CRAN (R 4.4.0)
##   c3net                                           1.1.1.1        2022-06-24 [2] CRAN (R 4.4.0)
##   C50                                             0.1.8          2023-02-08 [2] CRAN (R 4.4.0)
##   ca                                              0.71.1         2020-01-24 [2] CRAN (R 4.4.0)
##   cachem                                          1.0.8          2023-05-01 [2] CRAN (R 4.4.0)
##   cadd.v1.6.hg19                                  3.18.1         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   cadd.v1.6.hg38                                  3.18.1         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   CaDrA                                           1.1.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CAEN                                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CAFE                                            1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CAGEfightR                                      1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cageminer                                       1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CAGEr                                           2.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CAGEWorkflow                                    1.19.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   Cairo                                           1.6-2          2023-11-28 [2] CRAN (R 4.4.0)
##   calibrate                                       1.7.7          2020-06-19 [2] CRAN (R 4.4.0)
##   callr                                           3.7.3          2022-11-02 [2] CRAN (R 4.4.0)
##   calm                                            1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CAMERA                                          1.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   canceR                                          1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cancerclass                                     1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cancerdata                                      1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   CancerSubtypes                                  1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   capushe                                         1.1.2          2023-11-27 [2] CRAN (R 4.4.0)
##   car                                             3.1-2          2023-03-30 [2] CRAN (R 4.4.0)
##   carData                                         3.0-5          2022-01-06 [2] CRAN (R 4.4.0)
##   cardelino                                       1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Cardinal                                        3.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CardinalIO                                      1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CardinalWorkflows                               1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   caret                                           6.0-94         2023-03-21 [2] CRAN (R 4.4.0)
##   caretEnsemble                                   2.0.3          2023-09-20 [2] CRAN (R 4.4.0)
##   CARNIVAL                                        2.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   casper                                          2.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CATALYST                                        1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   catdata                                         1.2.4          2024-01-25 [2] CRAN (R 4.4.0)
##   Category                                        2.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   categoryCompare                                 1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CatEncoders                                     0.1.1          2017-03-08 [2] CRAN (R 4.4.0)
##   caTools                                         1.18.2         2021-03-28 [2] CRAN (R 4.4.0)
##   CATT                                            2.0            2017-05-19 [2] CRAN (R 4.4.0)
##   CausalR                                         1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cba                                             0.2-23         2022-12-07 [2] CRAN (R 4.4.0)
##   cbaf                                            1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CBEA                                            1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cBioPortalData                                  2.15.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CBNplot                                         1.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cbpManager                                      1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ccaPP                                           0.3.3          2019-12-09 [2] CRAN (R 4.4.0)
##   ccdata                                          1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ccfindR                                         1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ccImpute                                        1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CCl4                                            1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ccmap                                           1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CCP                                             1.2            2022-04-21 [2] CRAN (R 4.4.0)
##   CCPlotR                                         1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CCPROMISE                                       1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ccrepe                                          1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ccTensor                                        1.0.2          2021-08-12 [2] CRAN (R 4.4.0)
##   CDFt                                            1.2            2021-02-18 [2] CRAN (R 4.4.0)
##   CDI                                             1.1.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   celaref                                         1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   celarefData                                     1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   celda                                           1.19.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CellaRepertorium                                1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CellBarcode                                     1.9.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cellbaseR                                       1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CellBench                                       1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   celldex                                         1.13.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   cellHTS2                                        2.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CelliD                                          1.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cellity                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CellMapper                                      1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CellMapperData                                  1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   cellmigRation                                   1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CellMixS                                        1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CellNOptR                                       1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cellranger                                      1.1.0          2016-07-27 [2] CRAN (R 4.4.0)
##   cellscape                                       1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CellScore                                       1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CellTrails                                      1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cellxgenedp                                     1.7.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CEMiTool                                        1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   censcyt                                         1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Cepo                                            1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ceRNAnetsim                                     1.15.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CeTF                                            1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CexoR                                           1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CFAssay                                         1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cfdnakit                                        1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cfDNAPro                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cfTools                                         1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cfToolsData                                     1.1.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   CGEN                                            3.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CGHbase                                         1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CGHcall                                         2.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cghMCR                                          1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CGHnormaliter                                   1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CGHregions                                      1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChAMP                                           2.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChAMPdata                                       2.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   changepoint                                     2.2.4          2022-11-03 [2] CRAN (R 4.4.0)
##   changepoint.np                                  1.0.5          2022-10-20 [2] CRAN (R 4.4.0)
##   checkmate                                       2.3.1          2023-12-04 [2] CRAN (R 4.4.0)
##   ChemmineDrugs                                   1.0.2          2024-01-16 [2] Bioconductor
##   ChemmineOB                                      1.41.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChemmineR                                       3.55.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chemometrics                                    1.4.4          2023-08-25 [2] CRAN (R 4.4.0)
##   ChemoSpec                                       6.1.9          2023-06-07 [2] CRAN (R 4.4.0)
##   ChemoSpecUtils                                  1.0.3          2023-05-30 [2] CRAN (R 4.4.0)
##   CHETAH                                          1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Chicago                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chihaya                                         1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chimeraviz                                      1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChimpHumanBrainData                             1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPanalyser                                    1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPComp                                        1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chipenrich                                      2.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chipenrich.data                                 2.27.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPexoQual                                     1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPexoQualExample                              1.27.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPpeakAnno                                    3.37.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPQC                                          1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPseeker                                      1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chipseq                                         1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chipseqDB                                       1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   chipseqDBData                                   1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPseqR                                        1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPsim                                         1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPXpress                                      1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChIPXpressData                                  1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   chk                                             0.9.1          2023-10-06 [2] CRAN (R 4.4.0)
##   chopsticks                                      1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chromDraw                                       2.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChromHeatMap                                    1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chromhmmData                                    0.99.2         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   chromote                                        0.1.2          2023-08-11 [2] CRAN (R 4.4.0)
##   chromPlot                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ChromSCape                                      1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chromstaR                                       1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chromstaRData                                   1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   chromVAR                                        1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   chron                                           2.3-61         2023-05-02 [2] CRAN (R 4.4.0)
##   CHRONOS                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cicerone                                        1.0.4          2021-01-10 [2] CRAN (R 4.4.0)
##   CIMICE                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CINdex                                          1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   circlize                                        0.4.15         2022-05-10 [2] CRAN (R 4.4.0)
##   circRNAprofiler                                 1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CircSeqAlignTk                                  1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CircStats                                       0.2-6          2018-07-01 [2] CRAN (R 4.4.0)
##   circular                                        0.5-0          2023-09-05 [2] CRAN (R 4.4.0)
##   cisPath                                         1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CiteFuse                                        1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Ckmeans.1d.dp                                   4.3.5          2023-08-19 [2] CRAN (R 4.4.0)
##   class                                           7.3-22         2023-05-03 [3] CRAN (R 4.4.0)
##   ClassifyR                                       3.7.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   classInt                                        0.4-10         2023-09-05 [2] CRAN (R 4.4.0)
##   cleanUpdTSeq                                    1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cleaver                                         1.41.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clevRvis                                        1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cli                                             3.6.2          2023-12-11 [2] CRAN (R 4.4.0)
##   clinfun                                         1.1.5          2023-10-19 [2] CRAN (R 4.4.0)
##   clippda                                         1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clipper                                         1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clipr                                           0.8.0          2022-02-22 [2] CRAN (R 4.4.0)
##   cliProfiler                                     1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clisymbols                                      1.2.0          2017-05-21 [2] CRAN (R 4.4.0)
##   CLL                                             1.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   CLLmethylation                                  1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   clock                                           0.7.0          2023-05-15 [2] CRAN (R 4.4.0)
##   Clomial                                         1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clst                                            1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clstutils                                       1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clue                                            0.3-65         2023-09-23 [2] CRAN (R 4.4.0)
##   ClueR                                           1.4.2          2023-11-15 [2] CRAN (R 4.4.0)
##   CluMSID                                         1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CluMSIDdata                                     1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   clustComp                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cluster                                         2.1.6          2023-12-01 [3] CRAN (R 4.4.0)
##   clusterCons                                     1.2            2022-02-22 [2] CRAN (R 4.4.0)
##   clusterExperiment                               2.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ClusterFoldSimilarity                           0.99.10        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clusterGeneration                               1.3.8          2023-08-16 [2] CRAN (R 4.4.0)
##   ClusterJudge                                    1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clusterProfiler                                 4.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ClusterR                                        1.3.2          2023-12-04 [2] CRAN (R 4.4.0)
##   clusterRepro                                    0.9            2018-10-15 [2] CRAN (R 4.4.0)
##   ClusterSignificance                             1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clusterSim                                      0.51-3         2023-06-10 [2] CRAN (R 4.4.0)
##   clusterStab                                     1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clustifyr                                       1.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clustifyrdatahub                                1.13.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ClustIRR                                        1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   clustree                                        0.5.1          2023-11-05 [2] CRAN (R 4.4.0)
##   clustvarsel                                     2.3.4          2020-12-16 [2] CRAN (R 4.4.0)
##   clv                                             0.3-2.4        2023-09-28 [2] CRAN (R 4.4.0)
##   clValid                                         0.7            2021-02-14 [2] CRAN (R 4.4.0)
##   CMA                                             1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cMAP                                            1.15.1         2024-01-16 [2] local
##   cMap2data                                       1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   cmapR                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cmdfun                                          1.0.2          2020-10-10 [2] CRAN (R 4.4.0)
##   cn.farms                                        1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cn.mops                                         1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNAnorm                                         1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNEr                                            1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNORdt                                          1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNORfeeder                                      1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNORfuzzy                                       1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNORode                                         1.45.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNTools                                         1.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNVfilteR                                       1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNVgears                                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cnvGSA                                          1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cnvGSAdata                                      1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   CNViz                                           1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNVMetrics                                      1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNVRanger                                       1.19.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CNVrd2                                          1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cobalt                                          4.5.3          2024-01-10 [2] CRAN (R 4.4.0)
##   cobs                                            1.3-5          2022-05-30 [2] CRAN (R 4.4.0)
##   CoCiteStats                                     1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   COCOA                                           2.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   coda                                            0.19-4         2020-09-30 [2] CRAN (R 4.4.0)
##   CodeDepends                                     0.6.5          2018-07-17 [2] CRAN (R 4.4.0)
##   codelink                                        1.71.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   codetools                                       0.2-19         2023-02-01 [3] CRAN (R 4.4.0)
##   CODEX                                           1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   codingMatrices                                  0.4.0          2023-02-01 [2] CRAN (R 4.4.0)
##   CoGAPS                                          3.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cogena                                          1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cogeqc                                          1.7.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Cogito                                          1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   coGPS                                           1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   COHCAP                                          1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   COHCAPanno                                      1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   coin                                            1.4-3          2023-09-27 [2] CRAN (R 4.4.0)
##   cola                                            2.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   collapse                                        2.0.9          2024-01-11 [2] CRAN (R 4.4.0)
##   collections                                     0.3.7          2023-01-05 [2] CRAN (R 4.4.0)
##   colonCA                                         1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   colorBlindness                                  0.1.9          2021-04-17 [2] CRAN (R 4.4.0)
##   colorRamps                                      2.3.1          2022-05-02 [2] CRAN (R 4.4.0)
##   colorspace                                      2.1-0          2023-01-23 [2] CRAN (R 4.4.0)
##   colourpicker                                    1.3.0          2023-08-21 [2] CRAN (R 4.4.0)
##   colourvalues                                    0.3.9          2023-04-11 [2] CRAN (R 4.4.0)
##   comapr                                          1.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   combi                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   combinat                                        0.0-8          2012-10-29 [2] CRAN (R 4.4.0)
##   coMET                                           1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   coMethDMR                                       1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   common                                          1.1.1          2023-12-19 [2] CRAN (R 4.4.0)
##   commonmark                                      1.9.0          2023-03-17 [2] CRAN (R 4.4.0)
##   compareGroups                                   4.7.2          2023-10-11 [2] CRAN (R 4.4.0)
##   compartmap                                      1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   COMPASS                                         1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   compcodeR                                       1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   compEpiTools                                    1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   compiler                                        4.4.0          2024-01-16 [3] local
##   ComplexHeatmap                                  2.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ComplexUpset                                    1.3.3          2021-12-11 [2] CRAN (R 4.4.0)
##   COMPoissonReg                                   0.8.1          2023-11-29 [2] CRAN (R 4.4.0)
##   compositions                                    2.0-7          2024-01-09 [2] CRAN (R 4.4.0)
##   CompoundDb                                      1.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CompQuadForm                                    1.4.3          2017-04-12 [2] CRAN (R 4.4.0)
##   ComPrAn                                         1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   comprehenr                                      0.6.10         2021-01-31 [2] CRAN (R 4.4.0)
##   compSPOT                                        1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   concaveman                                      1.1.0          2020-05-11 [2] CRAN (R 4.4.0)
##   concordexR                                      1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   condformat                                      0.10.1         2023-10-08 [2] CRAN (R 4.4.0)
##   condiments                                      1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   conditionz                                      0.1.0          2019-04-24 [2] CRAN (R 4.4.0)
##   CONFESS                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CONFESSdata                                     1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   config                                          0.3.2          2023-08-30 [2] CRAN (R 4.4.0)
##   configr                                         0.3.5          2020-07-17 [2] CRAN (R 4.4.0)
##   confintr                                        1.0.2          2023-06-04 [2] CRAN (R 4.4.0)
##   conflicted                                      1.2.0          2023-02-01 [2] CRAN (R 4.4.0)
##   conicfit                                        1.0.4          2015-10-05 [2] CRAN (R 4.4.0)
##   ConnectivityMap                                 1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   consensus                                       1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ConsensusClusterPlus                            1.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   consensusDE                                     1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   consensusOV                                     1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   consensusSeekeR                                 1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   consICA                                         2.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ConsRank                                        2.1.4          2024-01-24 [2] CRAN (R 4.4.0)
##   CONSTANd                                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   contrast                                        0.24.2         2022-10-05 [2] CRAN (R 4.4.0)
##   conumee                                         1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   convert                                         1.79.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   coop                                            0.6-3          2021-09-19 [2] CRAN (R 4.4.0)
##   copa                                            1.71.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   COPDSexualDimorphism.data                       1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   copula                                          1.1-3          2023-12-07 [2] CRAN (R 4.4.0)
##   CopyhelpeR                                      1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   CopyNeutralIMA                                  1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   CopyNumberPlots                                 1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   coRdon                                          1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CoRegNet                                        1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CoreGx                                          2.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Cormotif                                        1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   coro                                            1.0.3          2022-07-19 [2] CRAN (R 4.4.0)
##   corpcor                                         1.6.10         2021-09-16 [2] CRAN (R 4.4.0)
##   corral                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CORREP                                          1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   corrgram                                        1.14           2021-04-29 [2] CRAN (R 4.4.0)
##   corrplot                                        0.92           2021-11-18 [2] CRAN (R 4.4.0)
##   coseq                                           1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CoSIA                                           1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CoSIAdata                                       1.3.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   COSMIC.67                                       1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   cosmiq                                          1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cosmosR                                         1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   COSNet                                          1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   COTAN                                           2.3.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   countrycode                                     1.5.0          2023-05-30 [2] CRAN (R 4.4.0)
##   countsimQC                                      1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   covEB                                           1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CoverageView                                    1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   covr                                            3.6.4          2023-11-09 [2] CRAN (R 4.4.0)
##   covRNA                                          1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cowplot                                         1.1.3          2024-01-22 [2] CRAN (R 4.4.0)
##   cp4p                                            0.3.6          2019-02-24 [2] CRAN (R 4.4.0)
##   cplm                                            0.7-12         2024-01-14 [2] CRAN (R 4.4.0)
##   cpp11                                           0.4.7          2023-12-02 [2] CRAN (R 4.4.0)
##   cpvSNP                                          1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cqn                                             1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crayon                                          1.5.2          2022-09-29 [2] CRAN (R 4.4.0)
##   CRCL18                                          1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   credentials                                     2.0.1          2023-09-06 [2] CRAN (R 4.4.0)
##   CRImage                                         1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CRISPRball                                      0.99.10        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crisprBase                                      1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crisprBowtie                                    1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crisprBwa                                       1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crisprDesign                                    1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crisprScore                                     1.7.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crisprScoreData                                 1.7.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   CRISPRseek                                      1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crisprseekplus                                  1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CrispRVariants                                  1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crisprVerse                                     1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crisprViz                                       1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crlmm                                           1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crmn                                            0.0.21         2020-02-10 [2] CRAN (R 4.4.0)
##   crochet                                         2.3.0          2020-05-20 [2] CRAN (R 4.4.0)
##   crossmeta                                       1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   crosstalk                                       1.2.1          2023-11-23 [2] CRAN (R 4.4.0)
##   crul                                            1.4.0          2023-05-17 [2] CRAN (R 4.4.0)
##   CSAR                                            1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   csaw                                            1.37.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   csawBook                                        1.11.0         2024-01-29 [2] Bioconductor 3.19 (R 4.4.0)
##   csawUsersGuide                                  1.19.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   csdR                                            1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CSSQ                                            1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ctc                                             1.77.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CTCF                                            0.99.11        2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   CTdata                                          1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CTDquerier                                      2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CTexploreR                                      0.99.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cTRAP                                           1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ctsGE                                           1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CTSV                                            1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cubature                                        2.1.0          2023-06-11 [2] CRAN (R 4.4.0)
##   Cubist                                          0.4.2.1        2023-03-09 [2] CRAN (R 4.4.0)
##   cummeRbund                                      2.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedAdipoArray                               1.15.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedAdipoChIP                                1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedAdipoRNA                                 1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   CuratedAtlasQueryR                              1.1.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedBladderData                              1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedBreastData                               2.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedCRCData                                  2.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedMetagenomicData                          3.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedOvarianData                              1.41.1         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedPCaData                                  0.99.5         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedTBData                                   1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   curatedTCGAData                                 1.25.1         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   curl                                            5.2.0          2023-12-08 [2] CRAN (R 4.4.0)
##   customCMPdb                                     1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   customProDB                                     1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cvar                                            0.5            2022-11-03 [2] CRAN (R 4.4.0)
##   cvAUC                                           1.1.4          2022-01-17 [2] CRAN (R 4.4.0)
##   cvms                                            1.6.0          2023-06-29 [2] CRAN (R 4.4.0)
##   cvTools                                         0.3.2          2012-05-14 [2] CRAN (R 4.4.0)
##   CVXR                                            1.0-11         2022-10-30 [2] CRAN (R 4.4.0)
##   cyanoFilter                                     1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cycle                                           1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cyclocomp                                       1.1.1          2023-08-30 [2] CRAN (R 4.4.0)
##   cydar                                           1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CytoDx                                          1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CyTOFpower                                      1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cytofQC                                         1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cytofWorkflow                                   1.27.1         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   CytoGLMM                                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cytoKernel                                      1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cytolib                                         2.15.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cytomapper                                      1.15.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cytoMEM                                         1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cytometree                                      2.0.2          2019-12-04 [2] CRAN (R 4.4.0)
##   CytoML                                          2.15.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CytoPipeline                                    1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   CytoPipelineGUI                                 1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   cytoviewer                                      1.3.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dada2                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dagitty                                         0.3-4          2023-12-07 [2] CRAN (R 4.4.0)
##   dagLogo                                         1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   daMA                                            1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DAMEfinder                                      1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DaMiRseq                                        2.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DAPAR                                           1.35.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DAPARdata                                       1.33.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   DART                                            1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dashboardthemes                                 1.1.6          2022-07-13 [2] CRAN (R 4.4.0)
##   data.table                                      1.14.10        2023-12-08 [2] CRAN (R 4.4.0)
##   data.tree                                       1.1.0          2023-11-12 [2] CRAN (R 4.4.0)
##   datamods                                        1.4.3          2024-01-10 [2] CRAN (R 4.4.0)
##   datasets                                      * 4.4.0          2024-01-16 [3] local
##   DataVisualizations                              1.3.2          2023-10-10 [2] CRAN (R 4.4.0)
##   datawizard                                      0.9.1          2023-12-21 [2] CRAN (R 4.4.0)
##   davidTiling                                     1.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   DBI                                             1.2.1          2024-01-12 [2] CRAN (R 4.4.0)
##   dbplyr                                          2.4.0          2023-10-26 [2] CRAN (R 4.4.0)
##   dbscan                                          1.1-12         2023-11-28 [2] CRAN (R 4.4.0)
##   dcanr                                           1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DCATS                                           1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dce                                             1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dcGSA                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ddCt                                            1.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ddPCRclust                                      1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DDRTree                                         0.1.5          2017-04-30 [2] CRAN (R 4.4.0)
##   dearseq                                         1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   debCAM                                          1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   debrowser                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   debugme                                         1.1.0          2017-10-22 [2] CRAN (R 4.4.0)
##   DECIPHER                                        2.31.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DeconRNASeq                                     1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   deconstructSigs                                 1.8.0          2016-07-29 [2] CRAN (R 4.4.0)
##   decontam                                        1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   decontX                                         1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   deconvR                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   decoupleR                                       2.9.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DeepPINCS                                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   deepSNV                                         1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DEFormats                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DegNorm                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DEGraph                                         1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DEGreport                                       1.39.4         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DEGseq                                          1.57.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Delaporte                                       8.3.0          2023-10-02 [2] CRAN (R 4.4.0)
##   DelayedArray                                    0.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DelayedDataFrame                                1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DelayedMatrixStats                              1.25.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DelayedRandomArray                              1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DelayedTensor                                   1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   deldir                                          2.0-2          2023-11-23 [2] CRAN (R 4.4.0)
##   DELocal                                         1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   deltaCaptureC                                   1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   deltaGseg                                       1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DeMAND                                          1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   deming                                          1.4            2018-11-13 [2] CRAN (R 4.4.0)
##   DeMixT                                          1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   demuxmix                                        1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   demuxSNP                                        1.1.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dendextend                                      1.17.1         2023-03-25 [2] CRAN (R 4.4.0)
##   dendsort                                        0.3.4          2021-04-20 [2] CRAN (R 4.4.0)
##   densEstBayes                                    1.0-2.2        2023-03-31 [2] CRAN (R 4.4.0)
##   densvis                                         1.13.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DEoptimR                                        1.1-3          2023-10-07 [2] CRAN (R 4.4.0)
##   DEP                                             1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DepecheR                                        1.19.8         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DepInfeR                                        1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   depmap                                          1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   depmixS4                                        1.5-0          2021-05-12 [2] CRAN (R 4.4.0)
##   DEqMS                                           1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   derfinder                                       1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   derfinderData                                   2.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   derfinderHelper                                 1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   derfinderPlot                                   1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Deriv                                           4.1.3          2021-02-24 [2] CRAN (R 4.4.0)
##   desc                                            1.4.3          2023-12-10 [2] CRAN (R 4.4.0)
##   DEScan2                                         1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DescTools                                       0.99.53        2024-01-18 [2] CRAN (R 4.4.0)
##   DESeq2                                          1.43.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DEsingle                                        1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   deSolve                                         1.40           2023-11-27 [2] CRAN (R 4.4.0)
##   DeSousa2013                                     1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   DESpace                                         1.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   destiny                                         3.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DEsubs                                          1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   devtools                                        2.4.5          2022-10-11 [2] CRAN (R 4.4.0)
##   DEWSeq                                          1.17.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DExMA                                           1.11.8         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DExMAdata                                       1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   DEXSeq                                          1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DFP                                             1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DGEobj                                          1.1.2          2022-05-16 [2] CRAN (R 4.4.0)
##   DGEobj.utils                                    1.0.6          2022-05-19 [2] CRAN (R 4.4.0)
##   dgof                                            1.4            2022-06-16 [2] CRAN (R 4.4.0)
##   diagram                                         1.6.5          2020-09-30 [2] CRAN (R 4.4.0)
##   DiagrammeR                                      1.0.10         2023-05-18 [2] CRAN (R 4.4.0)
##   DIAlignR                                        2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   diceR                                           2.2.0          2024-01-22 [2] CRAN (R 4.4.0)
##   dichromat                                       2.0-0.1        2022-05-02 [2] CRAN (R 4.4.0)
##   DiffBind                                        3.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   diffcoexp                                       1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DiffCorr                                        0.4.3          2023-08-25 [2] CRAN (R 4.4.0)
##   diffcyt                                         1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DifferentialRegulation                          2.1.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   diffGeneAnalysis                                1.85.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   diffHic                                         1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DiffLogo                                        2.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   diffloopdata                                    1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   diffobj                                         0.3.5          2021-10-05 [2] CRAN (R 4.4.0)
##   diffuStats                                      1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   diffUTR                                         1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   diffviewer                                      0.1.1          2021-09-30 [2] CRAN (R 4.4.0)
##   digest                                          0.6.34         2024-01-11 [2] CRAN (R 4.4.0)
##   diggit                                          1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   diggitdata                                      1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   Dino                                            1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   diptest                                         0.77-0         2023-11-27 [2] CRAN (R 4.4.0)
##   dir.expiry                                      1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   directlabels                                    2024.1.21      2024-01-24 [2] CRAN (R 4.4.0)
##   Director                                        1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   directPA                                        1.5.1          2023-11-16 [2] CRAN (R 4.4.0)
##   DirichletMultinomial                            1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DirichletReg                                    0.7-1          2021-05-18 [2] CRAN (R 4.4.0)
##   dirmult                                         0.1.3-5        2022-03-21 [2] CRAN (R 4.4.0)
##   discordant                                      1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DiscoRhythm                                     1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   distances                                       0.1.10         2023-11-28 [2] CRAN (R 4.4.0)
##   distill                                         1.6            2023-10-06 [2] CRAN (R 4.4.0)
##   distillery                                      1.2-1          2021-05-19 [2] CRAN (R 4.4.0)
##   distinct                                        1.15.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   distr                                           2.9.2          2023-05-08 [2] CRAN (R 4.4.0)
##   distributional                                  0.3.2          2023-03-22 [2] CRAN (R 4.4.0)
##   distributions3                                  0.2.1          2022-09-07 [2] CRAN (R 4.4.0)
##   dittoSeq                                        1.15.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   divergence                                      1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dixonTest                                       1.0.4          2022-08-22 [2] CRAN (R 4.4.0)
##   dks                                             1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DLBCL                                           1.43.1         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   dlstats                                         0.1.7          2023-05-24 [2] CRAN (R 4.4.0)
##   DMCFB                                           1.17.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DMCHMM                                          1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DmelSGI                                         1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   dml                                             1.1.0          2015-08-29 [2] CRAN (R 4.4.0)
##   DMRcaller                                       1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DMRcate                                         2.17.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DMRcatedata                                     2.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   DMRScan                                         1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dmrseq                                          1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DMwR2                                           0.0.2          2016-10-13 [2] CRAN (R 4.4.0)
##   DNABarcodeCompatibility                         1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DNABarcodes                                     1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DNAcopy                                         1.77.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DNAfusion                                       1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DNAshapeR                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DNAZooData                                      1.3.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   dnet                                            1.1.7          2020-02-20 [2] CRAN (R 4.4.0)
##   DO.db                                           2.9            2024-01-16 [2] Bioconductor
##   doBy                                            4.6.20         2023-11-01 [2] CRAN (R 4.4.0)
##   docopt                                          0.7.1          2020-06-24 [2] CRAN (R 4.4.0)
##   doFuture                                        1.0.1          2023-12-20 [2] CRAN (R 4.4.0)
##   doMC                                            1.3.8          2022-02-05 [2] CRAN (R 4.4.0)
##   DominoEffect                                    1.23.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DonaPLLP2013                                    1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   doParallel                                      1.0.17         2022-02-07 [2] CRAN (R 4.4.0)
##   doppelgangR                                     1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   doRNG                                           1.8.6          2023-01-16 [2] CRAN (R 4.4.0)
##   dorothea                                        1.15.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   Doscheda                                        1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DOSE                                            3.29.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   doseR                                           1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   doSNOW                                          1.0.20         2022-02-04 [2] CRAN (R 4.4.0)
##   dotCall64                                       1.1-1          2023-11-28 [2] CRAN (R 4.4.0)
##   DoubleExpSeq                                    1.1            2015-09-04 [2] CRAN (R 4.4.0)
##   doubletrouble                                   1.3.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   downlit                                         0.4.3          2023-06-29 [2] CRAN (R 4.4.0)
##   downloader                                      0.4            2015-07-09 [2] CRAN (R 4.4.0)
##   downloadthis                                    0.3.3          2023-11-09 [2] CRAN (R 4.4.0)
##   dpeak                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dplyr                                           1.1.4          2023-11-17 [2] CRAN (R 4.4.0)
##   dqrng                                           0.3.2          2023-11-29 [2] CRAN (R 4.4.0)
##   drawer                                          0.2.0.1        2022-08-19 [2] CRAN (R 4.4.0)
##   drawProteins                                    1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   drc                                             3.0-1          2016-08-30 [2] CRAN (R 4.4.0)
##   dreamlet                                        1.1.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dressCheck                                      0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   DrImpute                                        1.0            2017-07-15 [2] CRAN (R 4.4.0)
##   DRIMSeq                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DriverNet                                       1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DropletTestFiles                                1.13.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   DropletUtils                                    1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   drosgenome1.db                                  3.13.0         2024-01-16 [2] Bioconductor
##   drosophila2probe                                2.18.0         2024-01-16 [2] Bioconductor
##   drtmle                                          1.1.2          2023-01-05 [2] CRAN (R 4.4.0)
##   drugTargetInteractions                          1.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DrugVsDisease                                   2.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DrugVsDiseasedata                               1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   DSS                                             2.51.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dStruct                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DT                                              0.31           2023-12-09 [2] CRAN (R 4.4.0)
##   DTA                                             2.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dtangle                                         2.0.9          2019-12-01 [2] CRAN (R 4.4.0)
##   dtplyr                                          1.3.1          2023-03-22 [2] CRAN (R 4.4.0)
##   dtt                                             0.1-2          2013-12-30 [2] CRAN (R 4.4.0)
##   dtw                                             1.23-1         2022-09-19 [2] CRAN (R 4.4.0)
##   duckdb                                          0.9.2-1        2023-11-28 [2] CRAN (R 4.4.0)
##   Dune                                            1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dunn.test                                       1.3.5          2017-10-27 [2] CRAN (R 4.4.0)
##   DuoClustering2018                               1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   dupRadar                                        1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   DvDdata                                         1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   dyebias                                         1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   dyebiasexamples                                 1.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   dynamicTreeCut                                  1.63-1         2016-03-11 [2] CRAN (R 4.4.0)
##   DynDoc                                          1.81.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   e1071                                           1.7-14         2023-12-06 [2] CRAN (R 4.4.0)
##   earth                                           5.3.2          2023-01-26 [2] CRAN (R 4.4.0)
##   easier                                          1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   easierData                                      1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   EasyCellType                                    1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   easycsv                                         1.0.8          2018-05-21 [2] CRAN (R 4.4.0)
##   easylift                                        1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   easyPubMed                                      2.13           2019-03-29 [2] CRAN (R 4.4.0)
##   easyreporting                                   1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   easyRNASeq                                      2.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EatonEtAlChIPseq                                0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   EBarrays                                        2.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EBcoexpress                                     1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ebdbNet                                         1.2.8          2023-09-04 [2] CRAN (R 4.4.0)
##   EBImage                                         4.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EBSEA                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EBSeq                                           2.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EBSeqHMM                                        1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   echarts4r                                       0.4.5          2023-06-16 [2] CRAN (R 4.4.0)
##   ecodist                                         2.1.3          2023-10-30 [2] CRAN (R 4.4.0)
##   ecolicdf                                        2.18.0         2024-01-16 [2] Bioconductor
##   ecoliLeucine                                    1.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ecolitk                                         1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ECOSolveR                                       0.5.5          2023-05-15 [2] CRAN (R 4.4.0)
##   ecp                                             3.1.5          2023-07-01 [2] CRAN (R 4.4.0)
##   Ecume                                           0.9.1          2021-03-15 [2] CRAN (R 4.4.0)
##   EDASeq                                          2.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   edge                                            2.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   edgeR                                           4.1.13         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EDIRquery                                       1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   eds                                             1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   eegc                                            1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   effsize                                         0.8.1          2020-10-05 [2] CRAN (R 4.4.0)
##   EGAD                                            1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   egg                                             0.4.5          2019-07-13 [2] CRAN (R 4.4.0)
##   EGSEA                                           1.31.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EGSEA123                                        1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   EGSEAdata                                       1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   einsum                                          0.1.2          2023-08-28 [2] CRAN (R 4.4.0)
##   eiR                                             1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   eisaR                                           1.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   elasticnet                                      1.3            2020-05-15 [2] CRAN (R 4.4.0)
##   elitism                                         1.1.1          2023-09-02 [2] CRAN (R 4.4.0)
##   ellipse                                         0.5.0          2023-07-20 [2] CRAN (R 4.4.0)
##   ellipsis                                        0.3.2          2021-04-29 [2] CRAN (R 4.4.0)
##   ELMER                                           2.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ELMER.data                                      2.27.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   elsa                                            1.1-28         2020-03-19 [2] CRAN (R 4.4.0)
##   emdbook                                         1.3.13         2023-07-03 [2] CRAN (R 4.4.0)
##   emdist                                          0.3-3          2023-08-18 [2] CRAN (R 4.4.0)
##   EMDomics                                        2.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   emmeans                                         1.10.0         2024-01-23 [2] CRAN (R 4.4.0)
##   emojifont                                       0.5.5          2021-04-20 [2] CRAN (R 4.4.0)
##   EmpiricalBrownsMethod                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EMT                                             1.3            2023-02-06 [2] CRAN (R 4.4.0)
##   emtdata                                         1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ENCODExplorerData                               0.99.5         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   energy                                          1.7-11         2022-12-22 [2] CRAN (R 4.4.0)
##   english                                         1.2-6          2021-08-21 [2] CRAN (R 4.4.0)
##   EnhancedVolcano                                 1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   enhancerHomologSearch                           1.9.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EnMCB                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ENmix                                           1.39.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EnrichedHeatmap                                 1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EnrichmentBrowser                               2.33.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   enrichplot                                      1.23.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   enrichR                                         3.2            2023-04-14 [2] CRAN (R 4.4.0)
##   enrichTF                                        1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   enrichViewNet                                   1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EnsDb.Hsapiens.v75                              2.99.0         2024-01-16 [2] Bioconductor
##   EnsDb.Hsapiens.v79                              2.99.0         2024-01-16 [2] Bioconductor
##   EnsDb.Hsapiens.v86                              2.99.0         2024-01-16 [2] Bioconductor
##   EnsDb.Mmusculus.v79                             2.99.0         2024-01-16 [2] Bioconductor
##   EnsDb.Rnorvegicus.v79                           2.99.0         2024-01-16 [2] Bioconductor
##   ensembldb                                       2.27.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ensemblVEP                                      1.45.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ensurer                                         1.1            2015-04-21 [2] CRAN (R 4.4.0)
##   entropy                                         1.3.1          2021-10-02 [2] CRAN (R 4.4.0)
##   enviPat                                         2.6            2022-10-21 [2] CRAN (R 4.4.0)
##   EnvStats                                        2.8.1          2023-08-22 [2] CRAN (R 4.4.0)
##   epialleleR                                      1.11.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EpiCompare                                      1.7.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   epidecodeR                                      1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EpiDISH                                         2.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   epigenomix                                      1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   epigraHMM                                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EpiMix                                          1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EpiMix.data                                     1.5.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   epimutacions                                    1.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   epimutacionsData                                1.7.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   epiNEM                                          1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   epiR                                            2.0.67         2024-01-09 [2] CRAN (R 4.4.0)
##   epistack                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   epistasisGA                                     1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EpiTxDb                                         1.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   EpiTxDb.Hs.hg38                                 0.99.7         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   EpiTxDb.Mm.mm10                                 0.99.6         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   EpiTxDb.Sc.sacCer3                              0.99.5         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   epivizr                                         2.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   epivizrChart                                    1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   epivizrData                                     1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   epivizrServer                                   1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   epivizrStandalone                               1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   erccdashboard                                   1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   erma                                            1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ERSSA                                           1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   esATAC                                          1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   escape                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   escheR                                          1.3.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   esetVis                                         1.29.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   esquisse                                        1.2.0          2024-01-10 [2] CRAN (R 4.4.0)
##   estimability                                    1.4.1          2022-08-05 [2] CRAN (R 4.4.0)
##   estrogen                                        1.49.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   etec16s                                         1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   etrunct                                         0.1            2016-07-04 [2] CRAN (R 4.4.0)
##   eudysbiome                                      1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   eulerr                                          7.0.0          2022-12-10 [2] CRAN (R 4.4.0)
##   EuPathDB                                        1.0.1          2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   europepmc                                       0.4.3          2023-09-20 [2] CRAN (R 4.4.0)
##   eva                                             0.2.6          2020-11-15 [2] CRAN (R 4.4.0)
##   evaluate                                        0.23           2023-11-01 [2] CRAN (R 4.4.0)
##   evaluomeR                                       1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   evd                                             2.3-6.1        2022-07-04 [2] CRAN (R 4.4.0)
##   EventPointer                                    3.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   evmix                                           2.12           2019-09-03 [2] CRAN (R 4.4.0)
##   evobiR                                          1.1            2015-09-06 [2] CRAN (R 4.4.0)
##   EWCE                                            1.11.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ewceData                                        1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   Exact                                           3.2            2022-09-25 [2] CRAN (R 4.4.0)
##   exactRankTests                                  0.8-35         2022-04-26 [2] CRAN (R 4.4.0)
##   excelR                                          0.4.0          2020-03-09 [2] CRAN (R 4.4.0)
##   excluderanges                                   0.99.8         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   ExCluster                                       1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ExiMiR                                          2.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   exomePeak2                                      1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ExperimentHub                                   2.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ExperimentHubData                               1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ExperimentSubset                                1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ExpHunterSuite                                  1.11.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   expint                                          0.1-8          2022-10-28 [2] CRAN (R 4.4.0)
##   ExploreModelMatrix                              1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   expm                                            0.999-9        2024-01-11 [2] CRAN (R 4.4.0)
##   ExPosition                                      2.8.23         2019-01-07 [2] CRAN (R 4.4.0)
##   ExpressionAtlas                                 1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ExpressionNormalizationWorkflow                 1.29.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   ExtDist                                         0.7-2          2023-08-21 [2] CRAN (R 4.4.0)
##   extraChIPs                                      1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   extraDistr                                      1.10.0         2023-11-30 [2] CRAN (R 4.4.0)
##   extrafont                                       0.19           2023-01-18 [2] CRAN (R 4.4.0)
##   extrafontdb                                     1.0            2012-06-11 [2] CRAN (R 4.4.0)
##   extRemes                                        2.1-3          2022-11-18 [2] CRAN (R 4.4.0)
##   EZtune                                          3.1.1          2021-12-10 [2] CRAN (R 4.4.0)
##   faahKO                                          1.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   fabia                                           2.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fabiaData                                       1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   fabricatr                                       1.0.2          2024-01-16 [2] CRAN (R 4.4.0)
##   factDesign                                      1.79.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   factoextra                                      1.0.7          2020-04-01 [2] CRAN (R 4.4.0)
##   FactoMineR                                      2.9            2023-10-12 [2] CRAN (R 4.4.0)
##   factR                                           1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FamAgg                                          1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   famat                                           1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fANCOVA                                         0.6-1          2020-11-13 [2] CRAN (R 4.4.0)
##   fansi                                           1.0.6          2023-12-08 [2] CRAN (R 4.4.0)
##   FANTOM3and4CAGE                                 1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   farms                                           1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   farver                                          2.1.1          2022-07-06 [2] CRAN (R 4.4.0)
##   fastcluster                                     1.2.6          2024-01-12 [2] CRAN (R 4.4.0)
##   fastDummies                                     1.7.3          2023-07-06 [2] CRAN (R 4.4.0)
##   fastICA                                         1.2-4          2023-11-27 [2] CRAN (R 4.4.0)
##   fastLiquidAssociation                           1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fastmap                                         1.1.1          2023-02-24 [2] CRAN (R 4.4.0)
##   fastmatch                                       1.1-4          2023-08-18 [2] CRAN (R 4.4.0)
##   FastqCleaner                                    1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fastqcr                                         0.1.3          2023-02-18 [2] CRAN (R 4.4.0)
##   fastreeR                                        1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fastseg                                         1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fauxpas                                         0.5.2          2023-05-03 [2] CRAN (R 4.4.0)
##   fBasics                                         4032.96        2023-11-03 [2] CRAN (R 4.4.0)
##   FCBF                                            2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fCCAC                                           1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fCI                                             1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FCPS                                            1.3.4          2023-10-19 [2] CRAN (R 4.4.0)
##   fcScan                                          1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fda                                             6.1.4          2023-05-23 [2] CRAN (R 4.4.0)
##   FDb.InfiniumMethylation.hg18                    2.2.0          2024-01-16 [2] Bioconductor
##   FDb.InfiniumMethylation.hg19                    2.2.0          2024-01-16 [2] Bioconductor
##   FDb.UCSC.tRNAs                                  1.0.1          2024-01-16 [2] Bioconductor
##   fdrame                                          1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fdrtool                                         1.2.17         2021-11-13 [2] CRAN (R 4.4.0)
##   fds                                             1.8            2018-10-31 [2] CRAN (R 4.4.0)
##   FEAST                                           1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FeatSeekR                                       1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   feature                                         1.2.15         2021-02-10 [2] CRAN (R 4.4.0)
##   fedup                                           1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FELLA                                           1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fenr                                            1.1.5          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ff                                              4.0.12         2024-01-12 [2] CRAN (R 4.4.0)
##   ffpe                                            1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ffpeExampleData                                 1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   fftw                                            1.0-8          2024-01-08 [2] CRAN (R 4.4.0)
##   fftwtools                                       0.9-11         2021-03-01 [2] CRAN (R 4.4.0)
##   fGarch                                          4031.90        2023-10-15 [2] CRAN (R 4.4.0)
##   fgga                                            1.11.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FGNet                                           3.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fgsea                                           1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fibroEset                                       1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   FieldEffectCrc                                  1.13.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   fields                                          15.2           2023-08-17 [2] CRAN (R 4.4.0)
##   filehash                                        2.4-5          2023-02-09 [2] CRAN (R 4.4.0)
##   filelock                                        1.0.3          2023-12-11 [2] CRAN (R 4.4.0)
##   filematrix                                      1.3            2018-02-27 [2] CRAN (R 4.4.0)
##   filesstrings                                    3.2.4          2023-01-25 [2] CRAN (R 4.4.0)
##   FilterFFPE                                      1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FindIT2                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   findpython                                      1.0.8          2023-03-14 [2] CRAN (R 4.4.0)
##   fingerprint                                     3.5.7          2018-01-07 [2] CRAN (R 4.4.0)
##   FIs                                             1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   FISHalyseR                                      1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fishpond                                        2.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fission                                         1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   fit.models                                      0.64           2020-08-02 [2] CRAN (R 4.4.0)
##   fitdistrplus                                    1.1-11         2023-04-25 [2] CRAN (R 4.4.0)
##   FitHiC                                          1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flagme                                          1.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FLAMES                                          1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flashClust                                      1.01-2         2012-08-21 [2] CRAN (R 4.4.0)
##   flatxml                                         0.1.1          2020-12-01 [2] CRAN (R 4.4.0)
##   Fletcher2013a                                   1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   Fletcher2013b                                   1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   flexclust                                       1.4-1          2022-04-08 [2] CRAN (R 4.4.0)
##   flexdashboard                                   0.6.2          2023-08-11 [2] CRAN (R 4.4.0)
##   flexmix                                         2.3-19         2023-03-16 [2] CRAN (R 4.4.0)
##   flextable                                       0.9.4          2023-10-22 [2] CRAN (R 4.4.0)
##   float                                           0.3-2          2023-12-10 [2] CRAN (R 4.4.0)
##   flock                                           0.7            2016-11-12 [2] CRAN (R 4.4.0)
##   flowAI                                          1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowBeads                                       1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowBin                                         1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowcatchR                                      1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowCHIC                                        1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowClean                                       1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowClust                                       3.41.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowCore                                        2.15.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowCut                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowCyBar                                       1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowDensity                                     1.37.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowFP                                          1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowGate                                        1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowGraph                                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowMap                                         1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowMatch                                       1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowMeans                                       1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowMerge                                       2.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowPeaks                                       1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowPloidy                                      1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowPloidyData                                  1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   flowPlots                                       1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FlowSOM                                         2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FlowSorted.Blood.450k                           1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   FlowSorted.Blood.EPIC                           2.7.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   FlowSorted.CordBlood.450k                       1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   FlowSorted.CordBloodCombined.450k               1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   FlowSorted.CordBloodNorway.450k                 1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   FlowSorted.DLPFC.450k                           1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   flowSpecs                                       1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowStats                                       4.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowTime                                        1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowTrans                                       1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowViz                                         1.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowVS                                          1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowWorkspace                                   4.15.4         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   flowWorkspaceData                               3.15.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   fluentGenomics                                  1.15.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   fmcsR                                           1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FME                                             1.3.6.3        2023-07-05 [2] CRAN (R 4.4.0)
##   fmrs                                            1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fmsb                                            0.7.6          2024-01-19 [2] CRAN (R 4.4.0)
##   FMStable                                        0.1-4          2022-06-06 [2] CRAN (R 4.4.0)
##   FNN                                             1.1.4          2024-01-12 [2] CRAN (R 4.4.0)
##   fobitools                                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FoldGO                                          1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fontawesome                                     0.5.2          2023-08-19 [2] CRAN (R 4.4.0)
##   fontBitstreamVera                               0.1.1          2017-02-01 [2] CRAN (R 4.4.0)
##   fontLiberation                                  0.1.0          2016-10-15 [2] CRAN (R 4.4.0)
##   fontquiver                                      0.2.1          2017-02-01 [2] CRAN (R 4.4.0)
##   forcats                                         1.0.0          2023-01-29 [2] CRAN (R 4.4.0)
##   foreach                                         1.5.2          2022-02-02 [2] CRAN (R 4.4.0)
##   forecast                                        8.21.1         2023-08-31 [2] CRAN (R 4.4.0)
##   foreign                                         0.8-86         2023-11-28 [3] CRAN (R 4.4.0)
##   forestplot                                      3.1.3          2023-08-26 [2] CRAN (R 4.4.0)
##   formatR                                         1.14           2023-01-17 [2] CRAN (R 4.4.0)
##   formattable                                     0.2.1          2021-01-07 [2] CRAN (R 4.4.0)
##   Formula                                         1.2-5          2023-02-24 [2] CRAN (R 4.4.0)
##   formula.tools                                   1.7.1          2018-03-01 [2] CRAN (R 4.4.0)
##   fourDNData                                      1.3.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   fpc                                             2.2-11         2023-12-15 [2] CRAN (R 4.4.0)
##   fracdiff                                        1.5-2          2022-10-31 [2] CRAN (R 4.4.0)
##   fractional                                      0.1.3          2016-02-15 [2] CRAN (R 4.4.0)
##   frenchFISH                                      1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FreqProf                                        0.0.1          2016-01-21 [2] CRAN (R 4.4.0)
##   fresh                                           0.2.0          2020-05-29 [2] CRAN (R 4.4.0)
##   FRGEpistasis                                    1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   frma                                            1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   frmaExampleData                                 1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   frmaTools                                       1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   fs                                              1.6.3          2023-07-20 [2] CRAN (R 4.4.0)
##   FSA                                             0.9.5          2023-08-26 [2] CRAN (R 4.4.0)
##   FScanR                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   FSelector                                       0.34           2023-08-22 [2] CRAN (R 4.4.0)
##   fst                                             0.9.8          2022-02-08 [2] CRAN (R 4.4.0)
##   fstcore                                         0.9.18         2023-12-02 [2] CRAN (R 4.4.0)
##   FunChIP                                         1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   functional                                      0.6            2014-07-16 [2] CRAN (R 4.4.0)
##   funtooNorm                                      1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   furrowSeg                                       1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   furrr                                           0.3.1          2022-08-15 [2] CRAN (R 4.4.0)
##   FuseSOM                                         1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   futile.logger                                   1.4.3          2016-07-10 [2] CRAN (R 4.4.0)
##   futile.options                                  1.0.1          2018-04-20 [2] CRAN (R 4.4.0)
##   future                                          1.33.1         2023-12-22 [2] CRAN (R 4.4.0)
##   future.apply                                    1.11.1         2023-12-21 [2] CRAN (R 4.4.0)
##   fuzzyjoin                                       0.1.6          2020-05-15 [2] CRAN (R 4.4.0)
##   GA                                              3.2.4          2024-01-28 [2] CRAN (R 4.4.0)
##   GA4GHclient                                     1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GA4GHshiny                                      1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gaga                                            2.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gage                                            2.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gageData                                        2.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   gam                                             1.22-3         2023-11-29 [2] CRAN (R 4.4.0)
##   gamlss                                          5.4-20         2023-10-04 [2] CRAN (R 4.4.0)
##   gamlss.data                                     6.0-2          2021-11-07 [2] CRAN (R 4.4.0)
##   gamlss.dist                                     6.1-1          2023-08-23 [2] CRAN (R 4.4.0)
##   gap                                             1.5-3          2023-08-26 [2] CRAN (R 4.4.0)
##   gap.datasets                                    0.0.6          2023-08-25 [2] CRAN (R 4.4.0)
##   GAprediction                                    1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   garfield                                        1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gargle                                          1.5.2          2023-07-20 [2] CRAN (R 4.4.0)
##   GARS                                            1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gaschYHS                                        1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   GateFinder                                      1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gatom                                           1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gbm                                             2.1.9          2024-01-10 [2] CRAN (R 4.4.0)
##   GBScleanR                                       1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gbutils                                         0.5            2022-05-27 [2] CRAN (R 4.4.0)
##   gcapc                                           1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gcatest                                         2.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gclus                                           1.3.2          2019-01-07 [2] CRAN (R 4.4.0)
##   gCrisprTools                                    2.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gcrma                                           2.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gcspikelite                                     1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   gdata                                           3.0.0          2023-10-16 [2] CRAN (R 4.4.0)
##   GDCRNATools                                     1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gDNAinRNAseqData                                1.3.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   gDNAx                                           1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gDRcore                                         1.1.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gDRstyle                                        1.1.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gDRtestData                                     1.1.1          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   gDRutils                                        1.1.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GDSArray                                        1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gdsfmt                                          1.39.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gdtools                                         0.3.5          2023-12-09 [2] CRAN (R 4.4.0)
##   geeM                                            0.10.1         2018-06-18 [2] CRAN (R 4.4.0)
##   geepack                                         1.3.9          2022-08-16 [2] CRAN (R 4.4.0)
##   geigen                                          2.3            2019-05-30 [2] CRAN (R 4.4.0)
##   geiger                                          2.0.11         2023-04-03 [2] CRAN (R 4.4.0)
##   GEM                                             1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gemini                                          1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gemma.R                                         2.1.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   genalg                                          0.2.1          2022-04-04 [2] CRAN (R 4.4.0)
##   genArise                                        1.79.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   geneAttribution                                 1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneBreak                                       1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   geneClassifiers                                 1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   geneExpressionFromGEO                           0.9            2021-12-16 [2] CRAN (R 4.4.0)
##   GeneExpressionSignature                         1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   genefilter                                      1.85.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   genefu                                          2.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneGA                                          1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneGeneInteR                                   1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   geneLenDataBase                                 1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneMeta                                        1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneNet                                         1.2.16         2021-11-14 [2] CRAN (R 4.4.0)
##   GeneNetworkBuilder                              1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneOverlap                                     1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   geneplast                                       1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   geneplast.data                                  0.99.9         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   geneplast.data.string.v91                       0.99.6         2024-01-16 [2] Bioconductor
##   geneplotter                                     1.81.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   geneRecommender                                 1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneRegionScan                                  1.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   generegulation                                  1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   generics                                        0.1.3          2022-07-05 [2] CRAN (R 4.4.0)
##   geneRxCluster                                   1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneSelectMMD                                   2.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GENESIS                                         2.33.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneStructureTools                              1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneSummary                                     0.99.6         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   geNetClassifier                                 1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   genetics                                        1.3.8.1.3      2021-03-01 [2] CRAN (R 4.4.0)
##   GeneticsPed                                     1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeneTonic                                       2.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   geneXtendeR                                     1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GENIE3                                          1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   genieclust                                      1.1.5-2        2023-10-18 [2] CRAN (R 4.4.0)
##   genio                                           1.1.2          2023-01-06 [2] CRAN (R 4.4.0)
##   genlasso                                        1.6.1          2022-08-22 [2] CRAN (R 4.4.0)
##   GENLIB                                          1.1.9          2023-01-17 [2] CRAN (R 4.4.0)
##   genoCN                                          1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   genomation                                      1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   genomationData                                  1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomAutomorphism                               1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomeInfoDb                                    1.39.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomeInfoDbData                                1.2.11         2024-01-16 [2] Bioconductor
##   genomeIntervals                                 1.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   genomes                                         3.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   genomewidesnp5Crlmm                             1.0.6          2024-01-16 [2] local
##   genomewidesnp6Crlmm                             1.0.7          2024-01-16 [2] Bioconductor
##   GenomicAlignments                               1.39.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicDataCommons                              1.27.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicDistributions                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicDistributionsData                        1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicFeatures                                 1.55.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicFiles                                    1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   genomicInstability                              1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicInteractionNodes                         1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicInteractions                             1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicOZone                                    1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicRanges                                   1.55.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicScores                                   2.15.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicState                                    0.99.15        2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicSuperSignature                           1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenomicTools.fileHandler                        0.1.5.9        2020-03-05 [2] CRAN (R 4.4.0)
##   GenomicTuples                                   1.37.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenProSeq                                       1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GenSA                                           1.1.14         2024-01-22 [2] CRAN (R 4.4.0)
##   GenVisR                                         1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeoDiff                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GEOexplorer                                     1.9.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GEOfastq                                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GEOmetadb                                       1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   geometry                                        0.4.7          2023-02-03 [2] CRAN (R 4.4.0)
##   GeomxTools                                      3.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeoMxWorkflows                                  1.9.0          2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   GEOquery                                        2.71.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   geosphere                                       1.5-18         2022-11-15 [2] CRAN (R 4.4.0)
##   GEOsubmission                                   1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GeoTcgaData                                     2.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gep2pep                                         1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gert                                            2.0.1          2023-12-04 [2] CRAN (R 4.4.0)
##   gespeR                                          1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   getDEE2                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   getopt                                          1.20.4         2023-10-01 [2] CRAN (R 4.4.0)
##   GetoptLong                                      1.0.5          2020-12-15 [2] CRAN (R 4.4.0)
##   getPass                                         0.2-4          2023-12-10 [2] CRAN (R 4.4.0)
##   GeuvadisTranscriptExpr                          1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   geva                                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GEWIST                                          1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GFA                                             1.0.5          2023-10-21 [2] CRAN (R 4.4.0)
##   gfonts                                          0.2.0          2023-01-08 [2] CRAN (R 4.4.0)
##   gg4way                                          1.1.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggalluvial                                      0.12.5         2023-02-22 [2] CRAN (R 4.4.0)
##   GGally                                          2.2.0          2023-11-22 [2] CRAN (R 4.4.0)
##   ggalt                                           0.4.0          2017-02-15 [2] CRAN (R 4.4.0)
##   gganimate                                       1.0.8          2022-09-08 [2] CRAN (R 4.4.0)
##   ggbeeswarm                                      0.7.2          2023-04-29 [2] CRAN (R 4.4.0)
##   ggbio                                           1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggbump                                          0.1.0          2020-04-24 [2] CRAN (R 4.4.0)
##   ggcorrplot                                      0.1.4.1        2023-09-05 [2] CRAN (R 4.4.0)
##   ggcyto                                          1.31.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggdendro                                        0.1.23         2022-02-16 [2] CRAN (R 4.4.0)
##   ggdist                                          3.3.1          2023-11-27 [2] CRAN (R 4.4.0)
##   ggExtra                                         0.10.1         2023-08-21 [2] CRAN (R 4.4.0)
##   ggfittext                                       0.10.1         2023-09-05 [2] CRAN (R 4.4.0)
##   ggforce                                         0.4.1          2022-10-04 [2] CRAN (R 4.4.0)
##   ggformula                                       0.12.0         2023-11-09 [2] CRAN (R 4.4.0)
##   ggfortify                                       0.4.16         2023-03-20 [2] CRAN (R 4.4.0)
##   ggfun                                           0.1.4          2024-01-19 [2] CRAN (R 4.4.0)
##   gggenes                                         0.5.1          2023-09-05 [2] CRAN (R 4.4.0)
##   ggh4x                                           0.2.8          2024-01-23 [2] CRAN (R 4.4.0)
##   gghalves                                        0.1.4          2022-11-20 [2] CRAN (R 4.4.0)
##   gghighlight                                     0.4.1          2023-12-16 [2] CRAN (R 4.4.0)
##   ggimage                                         0.3.3          2023-06-19 [2] CRAN (R 4.4.0)
##   gginnards                                       0.1.2          2023-05-24 [2] CRAN (R 4.4.0)
##   ggiraph                                         0.8.8          2023-12-09 [2] CRAN (R 4.4.0)
##   ggkegg                                          1.1.10         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggm                                             2.5.1          2024-01-25 [2] CRAN (R 4.4.0)
##   ggmanh                                          1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggmcmc                                          1.5.1.1        2021-02-10 [2] CRAN (R 4.4.0)
##   ggmsa                                           1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggnetwork                                       0.5.12         2023-03-06 [2] CRAN (R 4.4.0)
##   ggnewscale                                      0.4.9          2023-05-25 [2] CRAN (R 4.4.0)
##   GGPA                                            1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggpattern                                       1.0.1          2022-11-09 [2] CRAN (R 4.4.0)
##   ggplot.multistats                               1.0.0          2019-10-28 [2] CRAN (R 4.4.0)
##   ggplot2                                         3.4.4          2023-10-12 [2] CRAN (R 4.4.0)
##   ggplotify                                       0.1.2          2023-08-09 [2] CRAN (R 4.4.0)
##   ggpmisc                                         0.5.5          2023-11-15 [2] CRAN (R 4.4.0)
##   ggpointdensity                                  0.1.0          2019-08-28 [2] CRAN (R 4.4.0)
##   ggpp                                            0.5.6          2024-01-09 [2] CRAN (R 4.4.0)
##   ggprism                                         1.0.4          2022-11-04 [2] CRAN (R 4.4.0)
##   ggpubr                                          0.6.0          2023-02-10 [2] CRAN (R 4.4.0)
##   ggraph                                          2.1.0          2022-10-09 [2] CRAN (R 4.4.0)
##   ggrastr                                         1.0.2          2023-06-01 [2] CRAN (R 4.4.0)
##   ggrepel                                         0.9.5          2024-01-10 [2] CRAN (R 4.4.0)
##   ggridges                                        0.5.6          2024-01-23 [2] CRAN (R 4.4.0)
##   ggsc                                            1.1.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggsci                                           3.0.0          2023-03-08 [2] CRAN (R 4.4.0)
##   ggside                                          0.2.3          2023-12-10 [2] CRAN (R 4.4.0)
##   ggsignif                                        0.6.4          2022-10-13 [2] CRAN (R 4.4.0)
##   ggspavis                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggstance                                        0.3.6          2022-11-16 [2] CRAN (R 4.4.0)
##   ggstar                                          1.0.4          2022-11-08 [2] CRAN (R 4.4.0)
##   ggstats                                         0.5.1          2023-11-21 [2] CRAN (R 4.4.0)
##   ggsurvfit                                       1.0.0          2023-10-31 [2] CRAN (R 4.4.0)
##   ggtern                                          3.4.2          2023-06-06 [2] CRAN (R 4.4.0)
##   ggtext                                          0.1.2          2022-09-16 [2] CRAN (R 4.4.0)
##   ggthemes                                        5.0.0          2023-11-21 [2] CRAN (R 4.4.0)
##   ggtree                                          3.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggtreeDendro                                    1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggtreeExtra                                     1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ggupset                                         0.3.0          2020-05-05 [2] CRAN (R 4.4.0)
##   ggvenn                                          0.1.10         2023-03-31 [2] CRAN (R 4.4.0)
##   ggVennDiagram                                   1.5.0          2024-01-13 [2] CRAN (R 4.4.0)
##   ggvis                                           0.4.8          2023-03-08 [2] CRAN (R 4.4.0)
##   ggwordcloud                                     0.6.1          2023-10-26 [2] CRAN (R 4.4.0)
##   gh                                              1.4.0          2023-02-22 [2] CRAN (R 4.4.0)
##   GIGSEA                                          1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GIGSEAdata                                      1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   girafe                                          1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   git2r                                           0.33.0         2023-11-26 [2] CRAN (R 4.4.0)
##   gitcreds                                        0.1.2          2022-09-08 [2] CRAN (R 4.4.0)
##   GLAD                                            2.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GladiaTOX                                       1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   glasso                                          1.11           2019-10-01 [2] CRAN (R 4.4.0)
##   gld                                             2.6.6          2022-10-23 [2] CRAN (R 4.4.0)
##   Glimma                                          2.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   glm2                                            1.2.1          2018-08-11 [2] CRAN (R 4.4.0)
##   glmGamPoi                                       1.15.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   glmmSeq                                         0.5.5          2022-10-08 [2] CRAN (R 4.4.0)
##   glmmTMB                                         1.1.8          2023-10-07 [2] CRAN (R 4.4.0)
##   glmnet                                          4.1-8          2023-08-22 [2] CRAN (R 4.4.0)
##   glmnetUtils                                     1.1.9          2023-09-10 [2] CRAN (R 4.4.0)
##   glmpca                                          0.2.0          2020-07-18 [2] CRAN (R 4.4.0)
##   glmSparseNet                                    1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GlobalAncova                                    4.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GlobalOptions                                   0.1.2          2020-06-10 [2] CRAN (R 4.4.0)
##   globals                                         0.16.2         2022-11-21 [2] CRAN (R 4.4.0)
##   globalSeq                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   globaltest                                      5.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GloScope                                        1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   glue                                            1.7.0          2024-01-09 [2] CRAN (R 4.4.0)
##   gmapR                                           1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GmicR                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gmm                                             1.8            2023-06-06 [2] CRAN (R 4.4.0)
##   gmodels                                         2.18.1.1       2022-05-17 [2] CRAN (R 4.4.0)
##   gmoviz                                          1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gmp                                             0.7-4          2024-01-15 [2] CRAN (R 4.4.0)
##   GMRP                                            1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GNET2                                           1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gnm                                             1.1-5          2023-09-16 [2] CRAN (R 4.4.0)
##   GNOSIS                                          1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GO.db                                           3.18.0         2024-01-16 [2] Bioconductor
##   GOexpress                                       1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GoFKernel                                       2.1-1          2018-05-26 [2] CRAN (R 4.4.0)
##   goftest                                         1.2-3          2021-10-07 [2] CRAN (R 4.4.0)
##   GOfuncR                                         1.23.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   golem                                           0.4.1          2023-06-05 [2] CRAN (R 4.4.0)
##   golubEsets                                      1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   googleAuthR                                     2.0.1          2023-04-11 [2] CRAN (R 4.4.0)
##   googledrive                                     2.1.1          2023-06-11 [2] CRAN (R 4.4.0)
##   googlesheets4                                   1.1.1          2023-06-11 [2] CRAN (R 4.4.0)
##   googleVis                                       0.7.1          2023-03-01 [2] CRAN (R 4.4.0)
##   GOpro                                           1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   goProfiles                                      1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GOSemSim                                        2.29.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   goseq                                           1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GOSim                                           1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   goSorensen                                      1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   goSTAG                                          1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GOstats                                         2.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GOTHiC                                          1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   goTools                                         1.77.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gower                                           1.0.1          2022-12-22 [2] CRAN (R 4.4.0)
##   GPA                                             1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gpaExample                                      1.15.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   gplots                                          3.1.3          2022-04-25 [2] CRAN (R 4.4.0)
##   gpls                                            1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gProfileR                                       0.7.0          2019-11-04 [2] CRAN (R 4.4.0)
##   gprofiler2                                      0.2.2          2023-06-14 [2] CRAN (R 4.4.0)
##   gpuMagic                                        1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gRain                                           1.4.1          2023-11-21 [2] CRAN (R 4.4.0)
##   GRaNIE                                          1.7.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   granulator                                      1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   graper                                          1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   graph                                           1.81.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GraphAlignment                                  1.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GraphAT                                         1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   graphics                                      * 4.4.0          2024-01-16 [3] local
##   graphite                                        1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   graphlayouts                                    1.1.0          2024-01-19 [2] CRAN (R 4.4.0)
##   GraphPAC                                        1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   grasp2db                                        1.1.0          2024-01-16 [2] local
##   gRbase                                          2.0.1          2023-11-29 [2] CRAN (R 4.4.0)
##   grDevices                                     * 4.4.0          2024-01-16 [3] local
##   GRENITS                                         1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GreyListChIP                                    1.35.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   grid                                            4.4.0          2024-01-16 [3] local
##   gridBase                                        0.4-7          2014-02-24 [2] CRAN (R 4.4.0)
##   gridExtra                                       2.3            2017-09-09 [2] CRAN (R 4.4.0)
##   gridGraphics                                    0.5-1          2020-12-13 [2] CRAN (R 4.4.0)
##   gridpattern                                     1.1.1          2023-10-25 [2] CRAN (R 4.4.0)
##   gridSVG                                         1.7-5          2023-03-09 [2] CRAN (R 4.4.0)
##   gridtext                                        0.1.5          2022-09-16 [2] CRAN (R 4.4.0)
##   grImport                                        0.9-7          2023-03-09 [2] CRAN (R 4.4.0)
##   grImport2                                       0.3-1          2023-10-27 [2] CRAN (R 4.4.0)
##   GRmetrics                                       1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   grndata                                         1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   groHMM                                          1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   groupdata2                                      2.0.3          2023-06-18 [2] CRAN (R 4.4.0)
##   grr                                             0.9.5          2016-08-26 [2] CRAN (R 4.4.0)
##   GSA                                             1.03.2         2022-03-19 [2] CRAN (R 4.4.0)
##   GSALightning                                    1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GSAR                                            1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GSBenchMark                                     1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   GSCA                                            2.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gscreend                                        1.17.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GSE103322                                       1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   GSE13015                                        1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   GSE159526                                       1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   GSE62944                                        1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   GSEABase                                        1.65.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GSEABenchmarkeR                                 1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GSEAlm                                          1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GSEAmining                                      1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gsean                                           1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GSgalgoR                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gsl                                             2.1-8          2023-01-24 [2] CRAN (R 4.4.0)
##   gsmoothr                                        0.1.7          2014-06-10 [2] CRAN (R 4.4.0)
##   gson                                            0.1.0          2023-03-07 [2] CRAN (R 4.4.0)
##   GSReg                                           1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GSRI                                            2.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gss                                             2.2-7          2023-08-16 [2] CRAN (R 4.4.0)
##   gstat                                           2.1-1          2023-04-06 [2] CRAN (R 4.4.0)
##   gsubfn                                          0.7            2018-03-16 [2] CRAN (R 4.4.0)
##   GSVA                                            1.51.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GSVAdata                                        1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   gt                                              0.10.1         2024-01-17 [2] CRAN (R 4.4.0)
##   gtable                                          0.3.4          2023-08-21 [2] CRAN (R 4.4.0)
##   gtools                                          3.9.5          2023-11-20 [2] CRAN (R 4.4.0)
##   gtrellis                                        1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GUIDEseq                                        1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Guitar                                          2.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GUniFrac                                        1.8            2023-09-14 [2] CRAN (R 4.4.0)
##   Gviz                                            1.47.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GWAS.BAYES                                      1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gwascat                                         2.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gwascatData                                     0.99.6         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   GWASdata                                        1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   GWASExactHW                                     1.01           2013-01-05 [2] CRAN (R 4.4.0)
##   GWASTools                                       1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   gwasurvivr                                      1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   GWENA                                           1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   h5vc                                            2.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   h5vcData                                        2.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hapFabia                                        1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   haplo.stats                                     1.9.5          2023-12-11 [2] CRAN (R 4.4.0)
##   hapmap100khind                                  1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hapmap100kxba                                   1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hapmap500knsp                                   1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hapmap500ksty                                   1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hapmapsnp5                                      1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hapmapsnp6                                      1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   harbChIP                                        1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hardhat                                         1.3.0          2023-03-30 [2] CRAN (R 4.4.0)
##   HardyWeinberg                                   1.7.5          2022-05-07 [2] CRAN (R 4.4.0)
##   Harman                                          1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HarmanData                                      1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   harmonicmeanp                                   3.0.1          2024-01-17 [2] CRAN (R 4.4.0)
##   HarmonizedTCGAData                              1.25.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HarmonizR                                       1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   harmony                                         1.2.0          2023-11-29 [2] CRAN (R 4.4.0)
##   Harshlight                                      1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hash                                            2.2.6.3        2023-08-19 [2] CRAN (R 4.4.0)
##   haven                                           2.5.4          2023-11-30 [2] CRAN (R 4.4.0)
##   hca                                             1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HCAData                                         1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HCATonsilData                                   1.1.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HD2013SGI                                       1.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HDCI                                            1.0-2          2017-06-06 [2] CRAN (R 4.4.0)
##   HDCytoData                                      1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HDF5Array                                       1.31.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hdf5r                                           1.3.9          2024-01-14 [2] CRAN (R 4.4.0)
##   HDInterval                                      0.2.4          2022-11-17 [2] CRAN (R 4.4.0)
##   HDO.db                                          0.99.1         2024-01-16 [2] Bioconductor
##   hdrcde                                          3.4            2021-01-18 [2] CRAN (R 4.4.0)
##   HDTD                                            1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   healthyControlsPresenceChecker                  1.7.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   healthyFlowData                                 1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   heatmap3                                        1.1.9          2021-01-06 [2] CRAN (R 4.4.0)
##   heatmaply                                       1.5.0          2023-10-06 [2] CRAN (R 4.4.0)
##   heatmaps                                        1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Heatplus                                        3.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HEEBOdata                                       1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HelloRanges                                     1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HelloRangesData                                 1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HELP                                            1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HEM                                             1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   here                                            1.0.1          2020-12-13 [2] CRAN (R 4.4.0)
##   hermes                                          1.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HERON                                           1.1.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Herper                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hexbin                                          1.28.3         2023-03-21 [2] CRAN (R 4.4.0)
##   HGC                                             1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hgfocuscdf                                      2.18.0         2024-01-16 [2] Bioconductor
##   hgfocusprobe                                    2.18.0         2024-01-16 [2] Bioconductor
##   HGNChelper                                      0.8.1          2019-10-24 [2] CRAN (R 4.4.0)
##   hgu133a.db                                      3.13.0         2024-01-16 [2] Bioconductor
##   hgu133a2.db                                     3.13.0         2024-01-16 [2] Bioconductor
##   hgu133abarcodevecs                              1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hgu133acdf                                      2.18.0         2024-01-16 [2] Bioconductor
##   hgu133afrmavecs                                 1.5.0          2024-01-16 [2] Bioconductor
##   hgu133aprobe                                    2.18.0         2024-01-16 [2] Bioconductor
##   hgu133atagcdf                                   2.18.0         2024-01-16 [2] Bioconductor
##   hgu133atagprobe                                 2.18.0         2024-01-16 [2] Bioconductor
##   hgu133plus2.db                                  3.13.0         2024-01-16 [2] Bioconductor
##   hgu133plus2barcodevecs                          1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hgu133plus2cdf                                  2.18.0         2024-01-16 [2] Bioconductor
##   hgu133plus2CellScore                            1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hgu133plus2frmavecs                             1.5.0          2024-01-18 [2] Bioconductor
##   hgu133plus2probe                                2.18.0         2024-01-16 [2] Bioconductor
##   hgu2beta7                                       1.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hgu95a.db                                       3.13.0         2024-01-16 [2] Bioconductor
##   hgu95acdf                                       2.18.0         2024-01-16 [2] Bioconductor
##   hgu95av2                                        2.2.0          2024-01-16 [2] Bioconductor
##   hgu95av2.db                                     3.13.0         2024-01-16 [2] Bioconductor
##   hgu95av2cdf                                     2.18.0         2024-01-16 [2] Bioconductor
##   hgu95av2probe                                   2.18.0         2024-01-16 [2] Bioconductor
##   hiAnnotator                                     1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HIBAG                                           1.39.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HiBED                                           1.1.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HiCBricks                                       1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HiCcompare                                      1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HiCDataHumanIMR90                               1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HiCDataLymphoblast                              1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HiCDCPlus                                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HiCDOC                                          1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HiCExperiment                                   1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HiContacts                                      1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HiContactsData                                  1.5.3          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HiCool                                          1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hicVennDiagram                                  1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HiddenMarkov                                    1.8-13         2021-04-27 [2] CRAN (R 4.4.0)
##   hierGWAS                                        1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hierinf                                         1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   highcharter                                     0.9.4          2022-01-03 [2] CRAN (R 4.4.0)
##   HighlyReplicatedRNASeq                          1.15.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   highr                                           0.10           2022-12-22 [2] CRAN (R 4.4.0)
##   highthroughputassays                            1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   Hiiragi2013                                     1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HilbertCurve                                    1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HilbertVis                                      1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HilbertVisGUI                                   1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HiLDA                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hipathia                                        3.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HIPPO                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hiReadsProcessor                                1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HIREewas                                        1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HiTC                                            1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HIVcDNAvantWout03                               1.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HiveR                                           0.3.63         2020-06-09 [2] CRAN (R 4.4.0)
##   hmdbQuery                                       1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Hmisc                                           5.1-1          2023-09-12 [2] CRAN (R 4.4.0)
##   HMMcopy                                         1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HMP16SData                                      1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HMP2Data                                        1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   hms                                             1.1.3          2023-03-21 [2] CRAN (R 4.4.0)
##   Homo.sapiens                                    1.3.1          2024-01-16 [2] Bioconductor
##   homologene                                      1.4.68.19.3.27 2019-03-28 [2] CRAN (R 4.4.0)
##   hoodscanR                                       1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hopach                                          2.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   howmany                                         0.3-1          2012-06-01 [2] CRAN (R 4.4.0)
##   HPAanalyze                                      1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hpAnnot                                         1.1.0          2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   hpar                                            1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HPiP                                            1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HPO.db                                          0.99.2         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   hrbrthemes                                      0.8.0          2020-03-06 [2] CRAN (R 4.4.0)
##   HSMMSingleCell                                  1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   htm2txt                                         2.2.2          2022-06-12 [2] CRAN (R 4.4.0)
##   htmlTable                                       2.4.2          2023-10-29 [2] CRAN (R 4.4.0)
##   htmltools                                       0.5.7          2023-11-03 [2] CRAN (R 4.4.0)
##   HTMLUtils                                       0.1.9          2024-01-25 [2] CRAN (R 4.4.0)
##   htmlwidgets                                     1.6.4          2023-12-06 [2] CRAN (R 4.4.0)
##   HTqPCR                                          1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HTSCluster                                      2.0.11         2023-09-05 [2] CRAN (R 4.4.0)
##   HTSeqGenie                                      4.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   HTSFilter                                       1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   httpcache                                       1.2.0          2021-01-10 [2] CRAN (R 4.4.0)
##   httpcode                                        0.3.0          2020-04-10 [2] CRAN (R 4.4.0)
##   httptest                                        4.2.2          2024-01-23 [2] CRAN (R 4.4.0)
##   httptest2                                       1.0.0          2023-11-07 [2] CRAN (R 4.4.0)
##   httpuv                                          1.6.14         2024-01-26 [2] CRAN (R 4.4.0)
##   httr                                            1.4.7          2023-08-15 [2] CRAN (R 4.4.0)
##   httr2                                           1.0.0          2023-11-14 [2] CRAN (R 4.4.0)
##   hu6800.db                                       3.13.0         2024-01-16 [2] Bioconductor
##   HubPub                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hues                                            0.2.0          2019-12-01 [2] CRAN (R 4.4.0)
##   huge                                            1.3.5          2021-06-30 [2] CRAN (R 4.4.0)
##   hugene10sttranscriptcluster.db                  8.8.0          2024-01-19 [2] Bioconductor
##   human.db0                                       3.18.0         2024-01-16 [2] Bioconductor
##   human370v1cCrlmm                                1.0.2          2024-01-16 [2] Bioconductor
##   human610quadv1bCrlmm                            1.0.3          2024-01-16 [2] Bioconductor
##   HumanAffyData                                   1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   humanCHRLOC                                     2.1.6          2024-01-16 [2] Bioconductor
##   humanStemCell                                   0.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   HumanTranscriptomeCompendium                    1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hummingbird                                     1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hunspell                                        3.0.3          2023-10-06 [2] CRAN (R 4.4.0)
##   hwriter                                         1.3.2.1        2022-04-08 [2] CRAN (R 4.4.0)
##   HybridMTest                                     1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hypeR                                           2.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hyperdraw                                       1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   hypergraph                                      1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iASeq                                           1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iasva                                           1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iBBiG                                           1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ibh                                             1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iBMQ                                            1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iC10                                            1.5            2019-02-08 [2] CRAN (R 4.4.0)
##   iC10TrainingData                                1.3.1          2018-08-24 [2] CRAN (R 4.4.0)
##   ica                                             1.0-3          2022-07-08 [2] CRAN (R 4.4.0)
##   iCARE                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Icens                                           1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   icetea                                          1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iCheck                                          1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iChip                                           1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iClusterPlus                                    1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iCNV                                            1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iCOBRA                                          1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ICS                                             1.4-1          2023-09-21 [2] CRAN (R 4.4.0)
##   ICSNP                                           1.1-2          2023-09-18 [2] CRAN (R 4.4.0)
##   ideal                                           1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IdeoViz                                         1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   idiogram                                        1.79.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IDPmisc                                         1.1.20         2020-01-21 [2] CRAN (R 4.4.0)
##   idpr                                            1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   idr                                             1.3            2022-06-21 [2] CRAN (R 4.4.0)
##   idr2d                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ids                                             1.0.1          2017-05-31 [2] CRAN (R 4.4.0)
##   iGC                                             1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IgGeneUsage                                     1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   igraph                                          1.6.0          2023-12-11 [2] CRAN (R 4.4.0)
##   igraphdata                                      1.0.1          2015-07-13 [2] CRAN (R 4.4.0)
##   igvR                                            1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IHW                                             1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IHWpaper                                        1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   Illumina450ProbeVariants.db                     1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   IlluminaDataTestFiles                           1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   IlluminaHumanMethylation450kanno.ilmn12.hg19    0.6.1          2024-01-16 [2] Bioconductor
##   IlluminaHumanMethylation450kmanifest            0.4.0          2024-01-16 [2] Bioconductor
##   IlluminaHumanMethylationEPICanno.ilm10b2.hg19   0.6.0          2024-01-16 [2] Bioconductor
##   IlluminaHumanMethylationEPICanno.ilm10b4.hg19   0.6.0          2024-01-16 [2] Bioconductor
##   IlluminaHumanMethylationEPICmanifest            0.3.0          2024-01-16 [2] Bioconductor
##   illuminaHumanv1.db                              1.26.0         2024-01-16 [2] Bioconductor
##   illuminaHumanv2.db                              1.26.0         2024-01-18 [2] Bioconductor
##   illuminaHumanv3.db                              1.26.0         2024-01-16 [2] Bioconductor
##   illuminaHumanv4.db                              1.26.0         2024-01-16 [2] Bioconductor
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##   ILoReg                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
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##   IMAS                                            1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
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##   imcRtools                                       1.9.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iml                                             0.11.1         2022-09-08 [2] CRAN (R 4.4.0)
##   IMMAN                                           1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ImmuneSpaceR                                    1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   immunoClust                                     1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   immunotation                                    1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   imp4p                                           1.2            2021-09-02 [2] CRAN (R 4.4.0)
##   IMPCdata                                        1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
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##   imputeLCMD                                      2.1            2022-06-10 [2] CRAN (R 4.4.0)
##   inaparc                                         1.2.0          2022-06-16 [2] CRAN (R 4.4.0)
##   INDEED                                          2.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ineq                                            0.2-13         2014-07-21 [2] CRAN (R 4.4.0)
##   iNETgrate                                       1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iNEXT                                           3.0.0          2022-08-29 [2] CRAN (R 4.4.0)
##   infercnv                                        1.19.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   infinityFlow                                    1.13.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Informeasure                                    1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   infotheo                                        1.2.0.1        2022-04-08 [2] CRAN (R 4.4.0)
##   ini                                             0.3.1          2018-05-20 [2] CRAN (R 4.4.0)
##   inline                                          0.3.19         2021-05-31 [2] CRAN (R 4.4.0)
##   InPAS                                           2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   INPower                                         1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   insight                                         0.19.7         2023-11-26 [2] CRAN (R 4.4.0)
##   INSPEcT                                         1.33.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   INTACT                                          1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   InTAD                                           1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   intansv                                         1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   interacCircos                                   1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   InteractionSet                                  1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   InteractiveComplexHeatmap                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   interactiveDisplay                              1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   interactiveDisplayBase                          1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   InterCellar                                     2.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IntEREst                                        1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   intergraph                                      2.0-3          2023-08-20 [2] CRAN (R 4.4.0)
##   InterMineR                                      1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   interp                                          1.1-6          2024-01-26 [2] CRAN (R 4.4.0)
##   intervals                                       0.15.4         2023-06-29 [2] CRAN (R 4.4.0)
##   IntramiRExploreR                                1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   intrinsicDimension                              1.2.0          2019-06-07 [2] CRAN (R 4.4.0)
##   inum                                            1.0-5          2023-03-09 [2] CRAN (R 4.4.0)
##   InvariantCausalPrediction                       0.8            2019-11-10 [2] CRAN (R 4.4.0)
##   invgamma                                        1.1            2017-05-07 [2] CRAN (R 4.4.0)
##   IONiseR                                         2.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iPAC                                            1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iPath                                           1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ipdDb                                           1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ipflasso                                        1.1            2019-12-10 [2] CRAN (R 4.4.0)
##   IPO                                             1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ipred                                           0.9-14         2023-03-09 [2] CRAN (R 4.4.0)
##   IRanges                                         2.37.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IRdisplay                                       1.1            2022-01-04 [2] CRAN (R 4.4.0)
##   IRISFGM                                         1.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IRkernel                                        1.3.2          2023-01-20 [2] CRAN (R 4.4.0)
##   irlba                                           2.3.5.1        2022-10-03 [2] CRAN (R 4.4.0)
##   irr                                             0.84.1         2019-01-26 [2] CRAN (R 4.4.0)
##   isa2                                            0.3.6          2023-02-21 [2] CRAN (R 4.4.0)
##   ISAnalytics                                     1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iSEE                                            2.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iSEEde                                          1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iSEEhex                                         1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iSEEhub                                         1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iSEEindex                                       1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iSEEpathways                                    1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iSEEu                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iSeq                                            1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ISLET                                           1.5.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Iso                                             0.0-21         2023-10-02 [2] CRAN (R 4.4.0)
##   isoband                                         0.2.7          2022-12-20 [2] CRAN (R 4.4.0)
##   isobar                                          1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IsoBayes                                        1.1.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ISOcodes                                        2023.12.07     2023-12-07 [2] CRAN (R 4.4.0)
##   IsoCorrectoR                                    1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IsoCorrectoRGUI                                 1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IsoformSwitchAnalyzeR                           2.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ISoLDE                                          1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   isomiRs                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   isotree                                         0.5.24-3       2023-12-02 [2] CRAN (R 4.4.0)
##   isva                                            1.9            2017-01-14 [2] CRAN (R 4.4.0)
##   ITALICS                                         2.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ITALICSData                                     2.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   iterativeBMA                                    1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iterativeBMAsurv                                1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   iterators                                       1.0.14         2022-02-05 [2] CRAN (R 4.4.0)
##   iterClust                                       1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   itertools                                       0.1-3          2014-03-12 [2] CRAN (R 4.4.0)
##   IVAS                                            2.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ivygapSE                                        1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   IWTomics                                        1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Iyer517                                         1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   JADE                                            2.0-4          2023-09-17 [2] CRAN (R 4.4.0)
##   janeaustenr                                     1.0.0          2022-08-26 [2] CRAN (R 4.4.0)
##   janitor                                         2.2.0          2023-02-02 [2] CRAN (R 4.4.0)
##   JASPAR2014                                      1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   JASPAR2016                                      1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   JASPAR2018                                      1.1.1          2024-01-16 [2] Bioconductor
##   JASPAR2020                                      0.99.10        2024-01-24 [2] Bioconductor
##   JASPAR2022                                      0.99.8         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   JASPAR2024                                      0.99.6         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   jomo                                            2.7-6          2023-04-15 [2] CRAN (R 4.4.0)
##   jose                                            1.2.0          2021-11-06 [2] CRAN (R 4.4.0)
##   jpeg                                            0.1-10         2022-11-29 [2] CRAN (R 4.4.0)
##   jquerylib                                       0.1.4          2021-04-26 [2] CRAN (R 4.4.0)
##   jsonlite                                        1.8.8          2023-12-04 [2] CRAN (R 4.4.0)
##   jsonvalidate                                    1.3.2          2021-11-03 [2] CRAN (R 4.4.0)
##   juicyjuice                                      0.1.0          2022-11-10 [2] CRAN (R 4.4.0)
##   kableExtra                                      1.4.0          2024-01-24 [2] CRAN (R 4.4.0)
##   karyoploteR                                     1.29.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   katdetectr                                      1.5.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   KBoost                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   KCsmart                                         2.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   kde1d                                           1.0.7          2024-01-26 [2] CRAN (R 4.4.0)
##   kebabs                                          1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   KEGGandMetacoreDzPathwaysGEO                    1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   KEGGdzPathwaysGEO                               1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   KEGGgraph                                       1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   KEGGlincs                                       1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   keggorthology                                   2.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   KEGGREST                                        1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Kendall                                         2.2.1          2022-03-20 [2] CRAN (R 4.4.0)
##   keras                                           2.13.0         2023-08-15 [2] CRAN (R 4.4.0)
##   kernlab                                         0.9-32         2023-01-31 [2] CRAN (R 4.4.0)
##   KernSmooth                                      2.23-22        2023-07-10 [3] CRAN (R 4.4.0)
##   kidpack                                         1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   kinship2                                        1.9.6          2022-10-05 [2] CRAN (R 4.4.0)
##   KinSwingR                                       1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   kissDE                                          1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   kknn                                            1.3.1          2016-03-26 [2] CRAN (R 4.4.0)
##   klaR                                            1.7-3          2023-12-13 [2] CRAN (R 4.4.0)
##   km.ci                                           0.5-6          2022-04-06 [2] CRAN (R 4.4.0)
##   kmer                                            1.1.2          2019-05-20 [2] CRAN (R 4.4.0)
##   KMsurv                                          0.1-5          2012-12-03 [2] CRAN (R 4.4.0)
##   knitcitations                                   1.0.12         2021-01-10 [2] CRAN (R 4.4.0)
##   knitr                                           1.45           2023-10-30 [2] CRAN (R 4.4.0)
##   knitrBootstrap                                  1.0.2          2018-05-24 [2] CRAN (R 4.4.0)
##   knn.covertree                                   1.0            2019-10-28 [2] CRAN (R 4.4.0)
##   KnowSeq                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   KOdata                                          1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   kohonen                                         3.0.12         2023-06-09 [2] CRAN (R 4.4.0)
##   koRpus                                          0.13-8         2021-05-17 [2] CRAN (R 4.4.0)
##   koRpus.lang.en                                  0.1-4          2020-10-24 [2] CRAN (R 4.4.0)
##   kpeaks                                          1.1.0          2020-02-08 [2] CRAN (R 4.4.0)
##   kpmt                                            0.1.0          2017-08-01 [2] CRAN (R 4.4.0)
##   kriging                                         1.2            2022-06-24 [2] CRAN (R 4.4.0)
##   ks                                              1.14.2         2024-01-15 [2] CRAN (R 4.4.0)
##   kSamples                                        1.2-10         2023-10-07 [2] CRAN (R 4.4.0)
##   labdsv                                          2.1-0          2023-04-10 [2] CRAN (R 4.4.0)
##   labeling                                        0.4.3          2023-08-29 [2] CRAN (R 4.4.0)
##   labelled                                        2.12.0         2023-06-21 [2] CRAN (R 4.4.0)
##   LACE                                            2.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   laeken                                          0.5.3          2024-01-25 [2] CRAN (R 4.4.0)
##   lambda.r                                        1.2.4          2019-09-18 [2] CRAN (R 4.4.0)
##   LambertW                                        0.6.9-1        2023-11-30 [2] CRAN (R 4.4.0)
##   lamW                                            2.2.3          2023-12-01 [2] CRAN (R 4.4.0)
##   LaplacesDemon                                   16.1.6         2021-07-09 [2] CRAN (R 4.4.0)
##   lapmix                                          1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lars                                            1.3            2022-04-13 [2] CRAN (R 4.4.0)
##   later                                           1.3.2          2023-12-06 [2] CRAN (R 4.4.0)
##   latex2exp                                       0.9.6          2022-11-28 [2] CRAN (R 4.4.0)
##   lattice                                         0.22-5         2023-10-24 [3] CRAN (R 4.4.0)
##   latticeExtra                                    0.6-30         2022-07-04 [2] CRAN (R 4.4.0)
##   lava                                            1.7.3          2023-11-04 [2] CRAN (R 4.4.0)
##   lavaan                                          0.6-17         2023-12-20 [2] CRAN (R 4.4.0)
##   lazyeval                                        0.2.2          2019-03-15 [2] CRAN (R 4.4.0)
##   LBE                                             1.71.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lbfgs                                           1.2.1.2        2022-06-23 [2] CRAN (R 4.4.0)
##   ldblock                                         1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   LDlinkR                                         1.3.0          2023-05-31 [2] CRAN (R 4.4.0)
##   LEA                                             3.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   leaps                                           3.1            2020-01-16 [2] CRAN (R 4.4.0)
##   learnr                                          0.11.5         2023-09-28 [2] CRAN (R 4.4.0)
##   LedPred                                         1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   leeBamViews                                     1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   lefser                                          1.13.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   leiden                                          0.4.3.1        2023-11-17 [2] CRAN (R 4.4.0)
##   leidenAlg                                       1.1.2          2023-09-06 [2] CRAN (R 4.4.0)
##   leidenbase                                      0.1.27         2023-12-01 [2] CRAN (R 4.4.0)
##   lemur                                           1.1.6          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   les                                             1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   leukemiasEset                                   1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   levi                                            1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lexicon                                         1.2.1          2019-03-21 [2] CRAN (R 4.4.0)
##   lfa                                             2.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lfda                                            1.1.3          2019-07-31 [2] CRAN (R 4.4.0)
##   lgr                                             0.4.4          2022-09-05 [2] CRAN (R 4.4.0)
##   lhs                                             1.1.6          2022-12-17 [2] CRAN (R 4.4.0)
##   libcoin                                         1.0-10         2023-09-27 [2] CRAN (R 4.4.0)
##   LiblineaR                                       2.10-23        2023-12-11 [2] CRAN (R 4.4.0)
##   LiebermanAidenHiC2009                           0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   lifecycle                                       1.0.4          2023-11-07 [2] CRAN (R 4.4.0)
##   liftOver                                        1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   liger                                           2.0.1          2021-01-25 [2] CRAN (R 4.4.0)
##   LIM                                             1.4.7          2022-05-11 [2] CRAN (R 4.4.0)
##   limma                                           3.59.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   limmaGUI                                        1.79.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   limSolve                                        1.5.7          2023-09-21 [2] CRAN (R 4.4.0)
##   lineagespot                                     1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   linkcomm                                        1.0-14         2021-02-04 [2] CRAN (R 4.4.0)
##   LinkHD                                          1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Linnorm                                         2.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   linprog                                         0.9-4          2022-03-09 [2] CRAN (R 4.4.0)
##   LinTInd                                         1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lintr                                           3.1.1          2023-11-07 [2] CRAN (R 4.4.0)
##   lionessR                                        1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lipidr                                          2.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   LiquidAssociation                               1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lisaClust                                       1.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   listenv                                         0.9.0          2022-12-16 [2] CRAN (R 4.4.0)
##   ListerEtAlBSseq                                 1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   listviewer                                      4.0.0          2023-09-30 [2] CRAN (R 4.4.0)
##   lmdme                                           1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lme4                                            1.1-35.1       2023-11-05 [2] CRAN (R 4.4.0)
##   lmerTest                                        3.1-3          2020-10-23 [2] CRAN (R 4.4.0)
##   lmodel2                                         1.7-3          2018-02-05 [2] CRAN (R 4.4.0)
##   lmom                                            3.0            2023-08-29 [2] CRAN (R 4.4.0)
##   Lmoments                                        1.3-1          2019-03-15 [2] CRAN (R 4.4.0)
##   lmtest                                          0.9-40         2022-03-21 [2] CRAN (R 4.4.0)
##   LOBSTAHS                                        1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lobstr                                          1.1.2          2022-06-22 [2] CRAN (R 4.4.0)
##   locfdr                                          1.1-8          2015-07-15 [2] CRAN (R 4.4.0)
##   locfit                                          1.5-9.8        2023-06-11 [2] CRAN (R 4.4.0)
##   loci2path                                       1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   locStra                                         1.9            2022-04-12 [2] CRAN (R 4.4.0)
##   log4r                                           0.4.3          2022-11-28 [2] CRAN (R 4.4.0)
##   logger                                          0.2.2          2021-10-19 [2] CRAN (R 4.4.0)
##   logging                                         0.10-108       2019-07-14 [2] CRAN (R 4.4.0)
##   logicFS                                         2.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   LogicReg                                        1.6.6          2023-08-08 [2] CRAN (R 4.4.0)
##   logistf                                         1.26.0         2023-08-18 [2] CRAN (R 4.4.0)
##   logitnorm                                       0.8.39         2024-01-24 [2] CRAN (R 4.4.0)
##   logNormReg                                      0.5-0          2021-11-08 [2] CRAN (R 4.4.0)
##   logr                                            1.3.5          2023-11-09 [2] CRAN (R 4.4.0)
##   logspline                                       2.1.21         2023-10-26 [2] CRAN (R 4.4.0)
##   lokern                                          1.1-10.1       2023-12-07 [2] CRAN (R 4.4.0)
##   LOLA                                            1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   longitudinal                                    1.1.13         2021-11-13 [2] CRAN (R 4.4.0)
##   loo                                             2.6.0          2023-03-31 [2] CRAN (R 4.4.0)
##   LoomExperiment                                  1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   LPE                                             1.77.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lpNet                                           2.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lpSolve                                         5.6.20         2023-12-10 [2] CRAN (R 4.4.0)
##   lpSolveAPI                                      5.5.2.0-17.11  2023-11-28 [2] CRAN (R 4.4.0)
##   lpsymphony                                      1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   LRBaseDbi                                       2.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   LRcell                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   LRcellTypeMarkers                               1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   lsa                                             0.73.3         2022-05-09 [2] CRAN (R 4.4.0)
##   LSD                                             4.1-0          2020-06-17 [2] CRAN (R 4.4.0)
##   lsr                                             0.5.2          2021-12-01 [2] CRAN (R 4.4.0)
##   lubridate                                       1.9.3          2023-09-27 [2] CRAN (R 4.4.0)
##   lumi                                            2.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lumiBarnes                                      1.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   lumiHumanAll.db                                 1.22.0         2024-01-16 [2] Bioconductor
##   lumiHumanIDMapping                              1.10.1         2024-01-16 [2] Bioconductor
##   LungCancerACvsSCCGEO                            1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   LungCancerLines                                 0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   lungExpression                                  0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   lute                                            0.99.26        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   lwgeom                                          0.2-13         2023-05-22 [2] CRAN (R 4.4.0)
##   lydata                                          1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   LymphoSeq                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   LymphoSeqDB                                     0.99.2         2024-01-16 [2] Bioconductor
##   M3C                                             1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   M3DExampleData                                  1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   M3Drop                                          1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   m6Aboost                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Maaslin2                                        1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Macarron                                        1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   maCorrPlot                                      1.73.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   macrophage                                      1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MACSdata                                        1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MACSQuantifyR                                   1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MACSr                                           1.11.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   made4                                           1.77.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MADSEQ                                          1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   maEndToEnd                                      2.23.1         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   MafDb.1Kgenomes.phase1.hs37d5                   3.10.0         2024-01-16 [2] Bioconductor
##   MafDb.1Kgenomes.phase3.GRCh38                   3.10.0         2024-01-16 [2] Bioconductor
##   MafDb.1Kgenomes.phase3.hs37d5                   3.10.0         2024-01-16 [2] Bioconductor
##   MafDb.ExAC.r1.0.hs37d5                          3.10.0         2024-01-16 [2] Bioconductor
##   MafDb.gnomADex.r2.1.hs37d5                      3.10.0         2024-01-16 [2] Bioconductor
##   MafH5.gnomAD.v3.1.2.GRCh38                      3.15.0         2024-01-16 [2] Bioconductor
##   maftools                                        2.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MAGAR                                           1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MAGeCKFlute                                     2.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   magic                                           1.6-1          2022-11-16 [2] CRAN (R 4.4.0)
##   magick                                          2.8.2          2023-12-20 [2] CRAN (R 4.4.0)
##   magpie                                          1.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   magrene                                         1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   magrittr                                        2.0.3          2022-03-30 [2] CRAN (R 4.4.0)
##   MAI                                             1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   maigesPack                                      1.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MAIT                                            1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   makecdfenv                                      1.79.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MALDIquant                                      1.22.2         2024-01-22 [2] CRAN (R 4.4.0)
##   MALDIquantForeign                               0.14.1         2024-01-22 [2] CRAN (R 4.4.0)
##   mammaPrintData                                  1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MANOR                                           1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MantelCorr                                      1.73.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mapplots                                        1.5.2          2023-08-25 [2] CRAN (R 4.4.0)
##   mapproj                                         1.2.11         2023-01-12 [2] CRAN (R 4.4.0)
##   maPredictDSC                                    1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   maps                                            3.4.2          2023-12-15 [2] CRAN (R 4.4.0)
##   mapscape                                        1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   maptree                                         1.4-8          2022-04-06 [2] CRAN (R 4.4.0)
##   maqcExpression4plex                             1.47.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MAQCsubset                                      1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   mariner                                         1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   marinerData                                     1.3.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   markdown                                        1.12           2023-12-06 [2] CRAN (R 4.4.0)
##   marr                                            1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   marray                                          1.81.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   martini                                         1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   maser                                           1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mashr                                           0.2.79         2023-10-18 [2] CRAN (R 4.4.0)
##   maSigPro                                        1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   maskBAD                                         1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MASS                                            7.3-60.2       2024-01-16 [3] local
##   MassArray                                       1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   massiR                                          1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MassSpecWavelet                                 1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MAST                                            1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mastR                                           1.3.4          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   matchBox                                        1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Matching                                        4.10-14        2023-09-14 [2] CRAN (R 4.4.0)
##   matchingR                                       1.3.3          2021-05-25 [2] CRAN (R 4.4.0)
##   mathjaxr                                        1.6-0          2022-02-28 [2] CRAN (R 4.4.0)
##   matlab                                          1.0.4          2022-06-01 [2] CRAN (R 4.4.0)
##   Matrix                                          1.6-5          2024-01-11 [3] CRAN (R 4.4.0)
##   matrixcalc                                      1.0-6          2022-09-14 [2] CRAN (R 4.4.0)
##   MatrixCorrelation                               0.10.0         2022-04-18 [2] CRAN (R 4.4.0)
##   MatrixEQTL                                      2.3            2019-12-22 [2] CRAN (R 4.4.0)
##   MatrixExtra                                     0.1.15         2024-01-22 [2] CRAN (R 4.4.0)
##   MatrixGenerics                                  1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MatrixModels                                    0.5-3          2023-11-06 [2] CRAN (R 4.4.0)
##   MatrixQCvis                                     1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MatrixRider                                     1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   matrixStats                                     1.2.0          2023-12-11 [2] CRAN (R 4.4.0)
##   matrixTests                                     0.2.3          2023-10-05 [2] CRAN (R 4.4.0)
##   matter                                          2.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   maxLik                                          1.5-2          2021-07-26 [2] CRAN (R 4.4.0)
##   maxstat                                         0.7-25         2017-03-02 [2] CRAN (R 4.4.0)
##   MBA                                             0.1-0          2022-11-29 [2] CRAN (R 4.4.0)
##   MBAmethyl                                       1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MBASED                                          1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MBCB                                            1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MBECS                                           1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mbest                                           0.6            2018-05-25 [2] CRAN (R 4.4.0)
##   mbkmeans                                        1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mboost                                          2.9-9          2023-12-07 [2] CRAN (R 4.4.0)
##   mBPCR                                           1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MBQN                                            2.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mbQTL                                           1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MBttest                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MCbiclust                                       1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mcbiopi                                         1.1.6          2018-10-06 [2] CRAN (R 4.4.0)
##   MCL                                             1.0            2015-03-11 [2] CRAN (R 4.4.0)
##   mclust                                          6.0.1          2023-11-15 [2] CRAN (R 4.4.0)
##   mclustcomp                                      0.3.3          2021-06-13 [2] CRAN (R 4.4.0)
##   mcmc                                            0.9-8          2023-11-16 [2] CRAN (R 4.4.0)
##   MCMCglmm                                        2.35           2023-06-30 [2] CRAN (R 4.4.0)
##   MCMCpack                                        1.7-0          2024-01-18 [2] CRAN (R 4.4.0)
##   MCMCprecision                                   0.4.0          2019-12-05 [2] CRAN (R 4.4.0)
##   mco                                             1.16           2024-01-11 [2] CRAN (R 4.4.0)
##   mCSEA                                           1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mCSEAdata                                       1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   mcsurvdata                                      1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   mda                                             0.5-4          2023-06-23 [2] CRAN (R 4.4.0)
##   mdendro                                         2.2.1          2024-01-09 [2] CRAN (R 4.4.0)
##   mdp                                             1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mdqc                                            1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MDTS                                            1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MEAL                                            1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MeasurementError.cor                            1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MEAT                                            1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MEB                                             1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MEDIPS                                          1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MEDIPSData                                      1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MEDME                                           1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MEEBOdata                                       1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   mefa                                            3.2-8          2021-10-07 [2] CRAN (R 4.4.0)
##   megadepth                                       1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Melissa                                         1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   memoise                                         2.0.1          2021-11-26 [2] CRAN (R 4.4.0)
##   memuse                                          4.2-3          2023-01-24 [2] CRAN (R 4.4.0)
##   MerfishData                                     1.5.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   Mergeomics                                      1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MeSHDbi                                         1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   meshes                                          1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   meshr                                           2.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MesKit                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MESS                                            0.5.12         2023-08-20 [2] CRAN (R 4.4.0)
##   messina                                         1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metabCombiner                                   1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metabinR                                        1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MetaboAnnotation                                1.7.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MetaboCoreUtils                                 1.11.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metaboliteIDmapping                             1.0.0          2024-01-24 [2] Bioconductor
##   metabolomicsWorkbenchR                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metabomxtr                                      1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MetaboSignal                                    1.33.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metaCCA                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MetaCycle                                       1.2.0          2019-04-18 [2] CRAN (R 4.4.0)
##   MetaCyto                                        1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metadat                                         1.2-0          2022-04-06 [2] CRAN (R 4.4.0)
##   metafor                                         4.4-0          2023-09-27 [2] CRAN (R 4.4.0)
##   metagene                                        2.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metagene2                                       1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metagenomeSeq                                   1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MetaGxBreast                                    1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MetaGxOvarian                                   1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MetaGxPancreas                                  1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   metahdep                                        1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metaMA                                          3.1.3          2022-04-12 [2] CRAN (R 4.4.0)
##   metaMS                                          1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metaMSdata                                      1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MetaNeighbor                                    1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metap                                           1.9            2023-10-09 [2] CRAN (R 4.4.0)
##   MetaPhOR                                        1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metapod                                         1.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metapone                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metaSeq                                         1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metaseqR2                                       1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MetaVolcanoR                                    1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MetBrewer                                       0.2.0          2022-03-21 [2] CRAN (R 4.4.0)
##   MetCirc                                         1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methimpute                                      1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methInheritSim                                  1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methodical                                      0.99.21        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methods                                       * 4.4.0          2024-01-16 [3] local
##   MethPed                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MethReg                                         1.13.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methrix                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MethTargetedNGS                                 1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MethylAid                                       1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MethylAidData                                   1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   methylationArrayAnalysis                        1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   methylCC                                        1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methylclock                                     1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methylclockData                                 1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   methylGSA                                       1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methylInheritance                               1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methylKit                                       1.29.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MethylMix                                       2.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methylMnM                                       1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methylPipe                                      1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methylscaper                                    1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MethylSeekR                                     1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MethylSeqData                                   1.13.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   methylSig                                       1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   methylumi                                       2.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MetID                                           1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MetNet                                          1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   metR                                            0.14.1         2023-10-30 [2] CRAN (R 4.4.0)
##   Metrics                                         0.1.4          2018-07-09 [2] CRAN (R 4.4.0)
##   mfa                                             1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Mfuzz                                           2.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mgcv                                            1.9-1          2023-12-21 [3] CRAN (R 4.4.0)
##   MGFM                                            1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MGFR                                            1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MGLM                                            0.2.1          2022-04-13 [2] CRAN (R 4.4.0)
##   mgsa                                            1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mgsub                                           1.7.3          2021-07-28 [2] CRAN (R 4.4.0)
##   mhsmm                                           0.4.21         2023-08-23 [2] CRAN (R 4.4.0)
##   mia                                             1.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miaSim                                          1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miaViz                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mice                                            3.16.0         2023-06-05 [2] CRAN (R 4.4.0)
##   miceadds                                        3.17-44        2024-01-09 [2] CRAN (R 4.4.0)
##   MiChip                                          1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   microbenchmark                                  1.4.10         2023-04-28 [2] CRAN (R 4.4.0)
##   microbiome                                      1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MicrobiomeBenchmarkData                         1.5.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   microbiomeDASim                                 1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   microbiomeDataSets                              1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   microbiomeExplorer                              1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   microbiomeMarker                                1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MicrobiomeProfiler                              1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MicrobiomeStat                                  1.1            2022-01-24 [2] CRAN (R 4.4.0)
##   MicrobiotaProcess                               1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   microRNA                                        1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   microRNAome                                     1.25.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   microSTASIS                                     1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MICSQTL                                         1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   midasHLA                                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miloR                                           1.99.11        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mimager                                         1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mime                                            0.12           2021-09-28 [2] CRAN (R 4.4.0)
##   mina                                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MineICA                                         1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   minet                                           3.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   minfi                                           1.49.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   minfiData                                       0.49.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   minfiDataEPIC                                   1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MinimumDistance                                 1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   minionSummaryData                               1.33.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   miniUI                                          0.1.1.1        2018-05-18 [2] CRAN (R 4.4.0)
##   minpack.lm                                      1.2-4          2023-09-11 [2] CRAN (R 4.4.0)
##   minqa                                           1.2.6          2023-09-11 [2] CRAN (R 4.4.0)
##   MiPP                                            1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miQC                                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MIRA                                            1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MiRaGE                                          1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mirbase.db                                      1.2.0          2024-01-16 [2] Bioconductor
##   miRBaseConverter                                1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miRBaseVersions.db                              1.1.0          2024-01-16 [2] Bioconductor
##   miRcomp                                         1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miRcompData                                     1.33.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   mirIntegrator                                   1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miRLAB                                          1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miRmine                                         1.25.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mirna10cdf                                      2.18.0         2024-01-16 [2] Bioconductor
##   miRNAmeConverter                                1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miRNApath                                       1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miRNAtap                                        1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miRNAtap.db                                     0.99.10        2024-01-16 [2] Bioconductor
##   miRNATarget                                     1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   miRSM                                           1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   miRspongeR                                      2.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mirTarRnaSeq                                    1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   misc3d                                          0.9-1          2021-10-07 [2] CRAN (R 4.4.0)
##   miscTools                                       0.6-28         2023-05-03 [2] CRAN (R 4.4.0)
##   missForest                                      1.5            2022-04-14 [2] CRAN (R 4.4.0)
##   missMDA                                         1.19           2023-11-17 [2] CRAN (R 4.4.0)
##   missMethyl                                      1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   missRows                                        1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mistyR                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mitch                                           1.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mitml                                           0.4-5          2023-03-08 [2] CRAN (R 4.4.0)
##   mitoClone2                                      1.9.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mitools                                         2.4            2019-04-26 [2] CRAN (R 4.4.0)
##   mixOmics                                        6.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mixsmsn                                         1.1-10         2021-10-06 [2] CRAN (R 4.4.0)
##   mixsqp                                          0.3-54         2023-12-20 [2] CRAN (R 4.4.0)
##   mixtools                                        2.0.0          2022-12-05 [2] CRAN (R 4.4.0)
##   MKdescr                                         0.8            2022-11-05 [2] CRAN (R 4.4.0)
##   MKinfer                                         1.1            2023-04-17 [2] CRAN (R 4.4.0)
##   MKmisc                                          1.9            2022-11-19 [2] CRAN (R 4.4.0)
##   mlapi                                           0.1.1          2022-04-24 [2] CRAN (R 4.4.0)
##   mlbench                                         2.1-3.1        2023-05-05 [2] CRAN (R 4.4.0)
##   MLInterfaces                                    1.83.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MLmetrics                                       1.1.1          2016-05-13 [2] CRAN (R 4.4.0)
##   MLP                                             1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mlr                                             2.19.1         2022-09-29 [2] CRAN (R 4.4.0)
##   mlr3                                            0.17.2         2024-01-09 [2] CRAN (R 4.4.0)
##   mlr3learners                                    0.5.8          2023-12-21 [2] CRAN (R 4.4.0)
##   mlr3measures                                    0.5.0          2022-08-05 [2] CRAN (R 4.4.0)
##   mlr3misc                                        0.13.0         2023-09-20 [2] CRAN (R 4.4.0)
##   mlr3tuning                                      0.19.2         2023-11-28 [2] CRAN (R 4.4.0)
##   mlrMBO                                          1.1.5.1        2022-07-04 [2] CRAN (R 4.4.0)
##   MLSeq                                           2.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mltools                                         0.3.5          2018-05-12 [2] CRAN (R 4.4.0)
##   mmand                                           1.6.3          2023-02-07 [2] CRAN (R 4.4.0)
##   MMAPPR2                                         1.17.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MMAPPR2data                                     1.17.1         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MMDiff2                                         1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MMDiffBamSubset                                 1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MMUPHin                                         1.17.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mnem                                            1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mnormt                                          2.1.1          2022-09-26 [2] CRAN (R 4.4.0)
##   moanin                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MobilityTransformR                              1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mockery                                         0.4.4          2023-09-26 [2] CRAN (R 4.4.0)
##   MODA                                            1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ModCon                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   modeest                                         2.4.0          2019-11-18 [2] CRAN (R 4.4.0)
##   ModelMetrics                                    1.2.2.2        2020-03-17 [2] CRAN (R 4.4.0)
##   modelr                                          0.1.11         2023-03-22 [2] CRAN (R 4.4.0)
##   modeltools                                      0.2-23         2020-03-05 [2] CRAN (R 4.4.0)
##   Modstrings                                      1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MOFA2                                           1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MOFAdata                                        1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MOGAMUN                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mogsa                                           1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MoleculeExperiment                              1.3.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MOMA                                            1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   moments                                         0.14.1         2022-05-02 [2] CRAN (R 4.4.0)
##   monaLisa                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Moonlight2R                                     1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MoonlightR                                      1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mosaicCore                                      0.9.4.0        2023-11-05 [2] CRAN (R 4.4.0)
##   mosaics                                         2.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mosaicsExample                                  1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   mosbi                                           1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Motif2Site                                      1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   motifbreakR                                     2.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   motifcounter                                    1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MotifDb                                         1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   motifmatchr                                     1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   motifStack                                      1.47.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mouse4302.db                                    3.13.0         2024-01-16 [2] Bioconductor
##   mouse4302barcodevecs                            1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   mouse4302cdf                                    2.18.0         2024-01-16 [2] Bioconductor
##   mouse4302frmavecs                               1.5.0          2024-01-16 [2] Bioconductor
##   MouseFM                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MouseGastrulationData                           1.17.1         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MouseThymusAgeing                               1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MPFE                                            1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mpm                                             1.0-23         2022-04-01 [2] CRAN (R 4.4.0)
##   MPO.db                                          0.99.7         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   mpra                                            1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MPRAnalyze                                      1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MQmetrics                                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mrfDepth                                        1.0.16         2024-01-25 [2] CRAN (R 4.4.0)
##   mRMRe                                           2.1.2.1        2023-04-25 [2] CRAN (R 4.4.0)
##   msa                                             1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSA2dist                                        1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MsBackendMassbank                               1.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MsBackendMgf                                    1.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MsBackendMsp                                    1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MsBackendRawFileReader                          1.9.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MsBackendSql                                    1.3.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MsCoreUtils                                     1.15.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   msd16s                                          1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   msdata                                          0.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MsDataHub                                       1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   msentropy                                       0.1.4          2023-08-07 [2] CRAN (R 4.4.0)
##   MsExperiment                                    1.5.4          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MsFeatures                                      1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   msgbsR                                          1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   msgps                                           1.3.5          2022-10-20 [2] CRAN (R 4.4.0)
##   msigdb                                          1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   msigdbr                                         7.5.1          2022-03-30 [2] CRAN (R 4.4.0)
##   msImpute                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mslp                                            1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   msm                                             1.7.1          2023-11-23 [2] CRAN (R 4.4.0)
##   MSMB                                            1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   msmsEDA                                         1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   msmsTests                                       1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSnbase                                         2.29.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSnID                                           1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSPrep                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   msPurity                                        1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   msPurityData                                    1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MSQC                                            1.1.0          2022-05-01 [2] CRAN (R 4.4.0)
##   msqc1                                           1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   msqrob2                                         1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MsQuality                                       1.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSstats                                         4.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSstatsBig                                      1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSstatsConvert                                  1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSstatsLiP                                      1.9.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSstatsLOBD                                     1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSstatsPTM                                      2.5.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSstatsQC                                       2.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSstatsQCgui                                    1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSstatsShiny                                    1.5.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MSstatsTMT                                      2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mstate                                          0.3.2          2021-11-08 [2] CRAN (R 4.4.0)
##   mtbls2                                          1.33.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   MuData                                          1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MUGAExampleData                                 1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   Mulcom                                          1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   multcomp                                        1.4-25         2023-06-20 [2] CRAN (R 4.4.0)
##   multcompView                                    0.1-9          2023-04-09 [2] CRAN (R 4.4.0)
##   MultiAssayExperiment                            1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MultiBaC                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   multiClust                                      1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   multicool                                       1.0.0          2023-12-02 [2] CRAN (R 4.4.0)
##   multicrispr                                     1.13.4         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MultiDataSet                                    1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   multiGSEA                                       1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   multiHiCcompare                                 1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MultiMed                                        2.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   multiMiR                                        1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MultimodalExperiment                            1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   multiOmicsViz                                   1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MultiRNAflow                                    1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   multiscan                                       1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   multiWGCNA                                      1.1.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   multiWGCNAdata                                  1.1.2          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   multtest                                        2.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MuMIn                                           1.47.5         2023-03-22 [2] CRAN (R 4.4.0)
##   mumosa                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MungeSumstats                                   1.11.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   munsell                                         0.5.0          2018-06-12 [2] CRAN (R 4.4.0)
##   Mus.musculus                                    1.3.1          2024-01-16 [2] Bioconductor
##   muscat                                          1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   muscData                                        1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   muscle                                          3.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   MutationalPatterns                              3.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mutoss                                          0.1-13         2023-03-14 [2] CRAN (R 4.4.0)
##   MVCClass                                        1.77.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mvnfast                                         0.2.8          2023-02-23 [2] CRAN (R 4.4.0)
##   mvoutData                                       1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   mvoutlier                                       2.1.1          2021-07-30 [2] CRAN (R 4.4.0)
##   mvtnorm                                         1.2-4          2023-11-27 [2] CRAN (R 4.4.0)
##   MWASTools                                       1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mwcsr                                           0.1.7          2023-05-16 [2] CRAN (R 4.4.0)
##   mygene                                          1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   myvariant                                       1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mzID                                            1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   mzR                                             2.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nabor                                           0.5.0          2018-07-11 [2] CRAN (R 4.4.0)
##   NADA                                            1.6-1.1        2020-03-22 [2] CRAN (R 4.4.0)
##   NADfinder                                       1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   naivebayes                                      0.9.7          2020-03-08 [2] CRAN (R 4.4.0)
##   naniar                                          1.0.0          2023-02-02 [2] CRAN (R 4.4.0)
##   NanoMethViz                                     2.99.4         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NanoporeRNASeq                                  1.13.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   NanoStringDiff                                  1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NanoStringNCTools                               1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nanotatoR                                       1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nanotime                                        0.3.7          2022-10-24 [2] CRAN (R 4.4.0)
##   NanoTube                                        1.9.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nanotubes                                       1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   nat                                             1.8.23         2023-08-25 [2] CRAN (R 4.4.0)
##   nat.utils                                       0.6.1          2023-06-07 [2] CRAN (R 4.4.0)
##   natserv                                         1.0.0          2020-05-16 [2] CRAN (R 4.4.0)
##   naturalsort                                     0.1.3          2016-08-30 [2] CRAN (R 4.4.0)
##   NBAMSeq                                         1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NbClust                                         3.0.1          2022-05-02 [2] CRAN (R 4.4.0)
##   NBPSeq                                          0.3.1          2022-06-09 [2] CRAN (R 4.4.0)
##   ncbit                                           2013.03.29.1   2022-06-24 [2] CRAN (R 4.4.0)
##   ncdf4                                           1.22           2023-11-28 [2] CRAN (R 4.4.0)
##   ncdfFlow                                        2.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ncGTW                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NCIgraph                                        1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NCIgraphData                                    1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   NCmisc                                          1.2.0          2022-10-17 [2] CRAN (R 4.4.0)
##   ncRNAtools                                      1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ndexr                                           1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nearBynding                                     1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Nebulosa                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NeighborNet                                     1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nempi                                           1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   neo4r                                           0.1.1          2019-02-15 [2] CRAN (R 4.4.0)
##   NestLink                                        1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   NetActivity                                     1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NetActivityData                                 1.5.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   netboost                                        2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   netDx                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nethet                                          1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   netOmics                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NetPathMiner                                    1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   netprioR                                        1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NetRep                                          1.2.7          2023-08-19 [2] CRAN (R 4.4.0)
##   netresponse                                     1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NetSAM                                          1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   netSmooth                                       1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   network                                         1.18.2         2023-12-05 [2] CRAN (R 4.4.0)
##   networkD3                                       0.4            2017-03-18 [2] CRAN (R 4.4.0)
##   netZooR                                         1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NeuCA                                           1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Neve2006                                        0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   NewWave                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NGLVieweR                                       1.3.1          2021-06-01 [2] CRAN (R 4.4.0)
##   NGScopyData                                     1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ngsReports                                      2.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NHPoisson                                       3.3            2020-02-19 [2] CRAN (R 4.4.0)
##   nipals                                          0.8            2021-09-15 [2] CRAN (R 4.4.0)
##   nipalsMCIA                                      1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nlcv                                            0.3.5          2018-06-29 [2] CRAN (R 4.4.0)
##   nleqslv                                         3.3.5          2023-11-26 [2] CRAN (R 4.4.0)
##   nlme                                            3.1-164        2023-11-27 [3] CRAN (R 4.4.0)
##   nloptr                                          2.0.3          2022-05-26 [2] CRAN (R 4.4.0)
##   NLP                                             0.2-1          2020-10-14 [2] CRAN (R 4.4.0)
##   nls2                                            0.3-3          2022-05-02 [2] CRAN (R 4.4.0)
##   NMF                                             0.26           2023-03-20 [2] CRAN (R 4.4.0)
##   NMFN                                            2.0.1          2022-06-23 [2] CRAN (R 4.4.0)
##   NMI                                             2.0            2016-08-20 [2] CRAN (R 4.4.0)
##   nnet                                            7.3-19         2023-05-03 [3] CRAN (R 4.4.0)
##   nnlasso                                         0.3            2016-03-10 [2] CRAN (R 4.4.0)
##   nnls                                            1.5            2023-09-11 [2] CRAN (R 4.4.0)
##   nnNorm                                          2.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nnSVG                                           1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nnTensor                                        1.2.0          2023-06-22 [2] CRAN (R 4.4.0)
##   NOISeq                                          2.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nondetects                                      2.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nor1mix                                         1.3-2          2023-11-14 [2] CRAN (R 4.4.0)
##   NoRCE                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   norm                                            1.0-11.1       2023-06-18 [2] CRAN (R 4.4.0)
##   normalize450K                                   1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NormalyzerDE                                    1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NormqPCR                                        1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   normr                                           1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nortest                                         1.0-4          2015-07-30 [2] CRAN (R 4.4.0)
##   Nozzle.R1                                       1.1-1.1        2022-06-23 [2] CRAN (R 4.4.0)
##   np                                              0.60-17        2023-03-13 [2] CRAN (R 4.4.0)
##   NPARC                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   npGSEA                                          1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nsga2R                                          1.1            2022-05-23 [2] CRAN (R 4.4.0)
##   NTW                                             1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nucleoSim                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nucleR                                          2.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nuCpos                                          1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nullranges                                      1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   nullrangesData                                  1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   numbers                                         0.8-5          2022-11-23 [2] CRAN (R 4.4.0)
##   numDeriv                                        2016.8-1.1     2019-06-06 [2] CRAN (R 4.4.0)
##   NuPoP                                           2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   NxtIRFdata                                      1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   oaqc                                            1.0            2017-11-14 [2] CRAN (R 4.4.0)
##   objectProperties                                0.6.8          2022-05-02 [2] CRAN (R 4.4.0)
##   objectSignals                                   0.10.3         2022-04-05 [2] CRAN (R 4.4.0)
##   ObMiTi                                          1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   occugene                                        1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OCplus                                          1.77.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   oct4                                            1.19.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   octad                                           1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   octad.db                                        1.5.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   odseq                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   officer                                         0.6.3          2023-10-22 [2] CRAN (R 4.4.0)
##   OGRE                                            1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OHCA                                            0.99.7         2024-01-29 [1] Bioconductor 3.19 (R 4.4.0)
##   oligo                                           1.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   oligoClasses                                    1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   oligoData                                       1.8.0          2024-01-16 [2] Bioconductor
##   OLIN                                            1.81.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OLINgui                                         1.77.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OlinkAnalyze                                    3.6.2          2024-01-13 [2] CRAN (R 4.4.0)
##   omada                                           1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OmaDB                                           2.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   omicade4                                        1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OmicCircos                                      1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   omicplotR                                       1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   omicRexposome                                   1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OMICsPCA                                        1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OMICsPCAdata                                    1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   omicsPrint                                      1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Omixer                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OmnipathR                                       3.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ompBAM                                          1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OnassisJavaLibs                                 1.25.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   oncomix                                         1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   oncoscanR                                       1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OncoScore                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OncoSimulR                                      4.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Oncotree                                        0.3.5          2023-09-27 [2] CRAN (R 4.4.0)
##   oneSENSE                                        1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   onlineFDR                                       2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ontologyIndex                                   2.11           2023-05-30 [2] CRAN (R 4.4.0)
##   ontologyPlot                                    1.6            2021-02-10 [2] CRAN (R 4.4.0)
##   ontoProc                                        1.25.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ontoProcData                                    0.99.9904      2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   openair                                         2.18-0         2023-10-09 [2] CRAN (R 4.4.0)
##   opencpu                                         2.2.11         2023-08-07 [2] CRAN (R 4.4.0)
##   openCyto                                        2.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   openPrimeR                                      1.25.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   openPrimeRui                                    1.25.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   openssl                                         2.1.1          2023-09-25 [2] CRAN (R 4.4.0)
##   OpenStats                                       1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   openxlsx                                        4.2.5.2        2023-02-06 [2] CRAN (R 4.4.0)
##   operator.tools                                  1.6.3          2017-02-28 [2] CRAN (R 4.4.0)
##   oposSOM                                         2.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   oppar                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   oppti                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   optimalFlow                                     1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   optimalFlowData                                 1.15.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   optimParallel                                   1.0-2          2021-02-11 [2] CRAN (R 4.4.0)
##   optimx                                          2023-10.21     2023-10-24 [2] CRAN (R 4.4.0)
##   optparse                                        1.7.4          2024-01-16 [2] CRAN (R 4.4.0)
##   OPWeight                                        1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OrderedList                                     1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ordinal                                         2023.12-4      2023-12-04 [2] CRAN (R 4.4.0)
##   ore                                             1.7.4.1        2023-12-05 [2] CRAN (R 4.4.0)
##   ORFhunteR                                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ORFik                                           1.23.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   org.Ag.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.At.tair.db                                  3.18.0         2024-01-16 [2] Bioconductor
##   org.Bt.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.Ce.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.Cf.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.Dm.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.Dr.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.EcK12.eg.db                                 3.18.0         2024-01-16 [2] Bioconductor
##   org.EcSakai.eg.db                               3.18.0         2024-01-16 [2] Bioconductor
##   org.Gg.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.Hs.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.Mm.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.Mmu.eg.db                                   3.18.0         2024-01-16 [2] Bioconductor
##   org.Mxanthus.db                                 1.0.27         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   org.Pt.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.Rn.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.Sc.sgd.db                                   3.18.0         2024-01-16 [2] Bioconductor
##   org.Ss.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   org.Xl.eg.db                                    3.18.0         2024-01-16 [2] Bioconductor
##   Organism.dplyr                                  1.31.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OrganismDbi                                     1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OrgMassSpecR                                    0.5-3          2017-08-13 [2] CRAN (R 4.4.0)
##   origami                                         1.0.7          2022-10-19 [2] CRAN (R 4.4.0)
##   orthogene                                       1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   orthos                                          1.1.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   orthosData                                      1.1.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   OSAT                                            1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OSCA                                            1.13.0         2024-01-29 [2] Bioconductor 3.19 (R 4.4.0)
##   OSCA.advanced                                   1.11.0         2024-01-29 [2] Bioconductor 3.19 (R 4.4.0)
##   OSCA.basic                                      1.11.1         2024-01-29 [2] Bioconductor 3.19 (R 4.4.0)
##   OSCA.intro                                      1.11.0         2024-01-29 [2] Bioconductor 3.19 (R 4.4.0)
##   OSCA.multisample                                1.11.1         2024-01-29 [2] Bioconductor 3.19 (R 4.4.0)
##   OSCA.workflows                                  1.11.1         2024-01-29 [2] Bioconductor 3.19 (R 4.4.0)
##   Oscope                                          1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   osfr                                            0.2.9          2022-09-25 [2] CRAN (R 4.4.0)
##   osqp                                            0.6.3.2        2023-10-20 [2] CRAN (R 4.4.0)
##   OTUbase                                         1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   outliers                                        0.15           2022-03-26 [2] CRAN (R 4.4.0)
##   OUTRIDER                                        1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   OVESEG                                          1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PAA                                             1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   packFinder                                      1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   packrat                                         0.9.2          2023-09-05 [2] CRAN (R 4.4.0)
##   padma                                           1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PADOG                                           1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pageRank                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   paintmap                                        1.0            2016-08-31 [2] CRAN (R 4.4.0)
##   PAIRADISE                                       1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   paircompviz                                     1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PairedData                                      1.1.1          2018-06-02 [2] CRAN (R 4.4.0)
##   pairedGSEA                                      1.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pairkat                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pairsD3                                         0.1.3          2022-06-06 [2] CRAN (R 4.4.0)
##   paletteer                                       1.6.0          2024-01-21 [2] CRAN (R 4.4.0)
##   palmerpenguins                                  0.1.1          2022-08-15 [2] CRAN (R 4.4.0)
##   pals                                            1.8            2023-08-23 [2] CRAN (R 4.4.0)
##   pamr                                            1.56.1         2019-04-22 [2] CRAN (R 4.4.0)
##   pan                                             1.9            2023-12-07 [2] CRAN (R 4.4.0)
##   pandaR                                          1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pander                                          0.6.5          2022-03-18 [2] CRAN (R 4.4.0)
##   panelcn.mops                                    1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PanomiR                                         1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   panp                                            1.73.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PANR                                            1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PANTHER.db                                      1.0.12         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   PanViz                                          1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   paradox                                         0.11.1         2023-03-17 [2] CRAN (R 4.4.0)
##   parallel                                        4.4.0          2024-01-16 [3] local
##   parallelDist                                    0.2.6          2022-02-03 [2] CRAN (R 4.4.0)
##   ParallelLogger                                  3.3.0          2023-08-22 [2] CRAN (R 4.4.0)
##   parallelly                                      1.36.0         2023-05-26 [2] CRAN (R 4.4.0)
##   parallelMap                                     1.5.1          2021-06-28 [2] CRAN (R 4.4.0)
##   parameters                                      0.21.3         2023-11-02 [2] CRAN (R 4.4.0)
##   ParamHelpers                                    1.14.1         2022-07-04 [2] CRAN (R 4.4.0)
##   parathyroidSE                                   1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   pareg                                           1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   parglms                                         1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   parmigene                                       1.1.0          2020-08-03 [2] CRAN (R 4.4.0)
##   parody                                          1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   parsedate                                       1.3.1          2022-10-27 [2] CRAN (R 4.4.0)
##   partCNV                                         1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   party                                           1.3-14         2023-11-28 [2] CRAN (R 4.4.0)
##   partykit                                        1.2-20         2023-04-14 [2] CRAN (R 4.4.0)
##   pasilla                                         1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   pasillaBamSubset                                0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   PasillaTranscriptExpr                           1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   PAST                                            1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pastecs                                         1.3.21         2018-03-15 [2] CRAN (R 4.4.0)
##   patchwork                                       1.2.0          2024-01-08 [2] CRAN (R 4.4.0)
##   Path2PPI                                        1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pathifier                                       1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pathlinkR                                       0.99.381       2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PathNet                                         1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PathNetData                                     1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   PathoStat                                       1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pathRender                                      1.71.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pathVar                                         1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pathview                                        1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pathwayPCA                                      1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   patrick                                         0.2.0          2022-10-13 [2] CRAN (R 4.4.0)
##   paws.common                                     0.7.0          2024-01-09 [2] CRAN (R 4.4.0)
##   paws.storage                                    0.5.0          2024-01-09 [2] CRAN (R 4.4.0)
##   paxtoolsr                                       1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pbapply                                         1.7-2          2023-06-27 [2] CRAN (R 4.4.0)
##   pbdZMQ                                          0.3-11         2024-01-15 [2] CRAN (R 4.4.0)
##   pbivnorm                                        0.6.0          2015-01-23 [2] CRAN (R 4.4.0)
##   pbkrtest                                        0.5.2          2023-01-19 [2] CRAN (R 4.4.0)
##   pbmcapply                                       1.5.1          2022-04-28 [2] CRAN (R 4.4.0)
##   pcaExplorer                                     2.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pcalg                                           2.7-9          2023-09-26 [2] CRAN (R 4.4.0)
##   pcaMethods                                      1.95.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PCAN                                            1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pcaPP                                           2.0-4          2023-12-07 [2] CRAN (R 4.4.0)
##   PCAtools                                        2.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PCHiCdata                                       1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   pcxn                                            2.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pcxnData                                        2.25.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   pd.atdschip.tiling                              0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   pd.genomewidesnp.5                              3.14.1         2024-01-16 [2] Bioconductor
##   pd.genomewidesnp.6                              3.14.1         2024-01-16 [2] Bioconductor
##   pd.hg.u95a                                      3.12.0         2024-01-16 [2] Bioconductor
##   pd.hg.u95av2                                    3.12.0         2024-01-16 [2] Bioconductor
##   pd.hg18.60mer.expr                              3.12.0         2024-01-16 [2] Bioconductor
##   pd.huex.1.0.st.v2                               3.14.1         2024-01-16 [2] Bioconductor
##   pd.hugene.1.0.st.v1                             3.14.1         2024-01-16 [2] Bioconductor
##   pd.mapping250k.nsp                              3.12.0         2024-01-16 [2] Bioconductor
##   pd.mapping250k.sty                              3.12.0         2024-01-16 [2] Bioconductor
##   pd.mapping50k.hind240                           3.12.0         2024-01-16 [2] Bioconductor
##   pd.mapping50k.xba240                            3.12.0         2024-01-16 [2] Bioconductor
##   PDATK                                           1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pdfCluster                                      1.0-4          2022-12-02 [2] CRAN (R 4.4.0)
##   pdftools                                        3.4.0          2023-09-25 [2] CRAN (R 4.4.0)
##   pdInfoBuilder                                   1.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pdist                                           1.2.1          2022-05-02 [2] CRAN (R 4.4.0)
##   PeacoQC                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   peakPantheR                                     1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PECA                                            1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   peco                                            1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   penalized                                       0.9-52         2022-04-23 [2] CRAN (R 4.4.0)
##   pengls                                          1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pepDat                                          1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   PepsNMR                                         1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PepsNMRData                                     1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   pepStat                                         1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Peptides                                        2.4.6          2023-12-13 [2] CRAN (R 4.4.0)
##   pepXMLTab                                       1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PERFect                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PerfMeas                                        1.2.5          2022-09-14 [2] CRAN (R 4.4.0)
##   performance                                     0.10.8         2023-10-30 [2] CRAN (R 4.4.0)
##   PerformanceAnalytics                            2.0.4          2020-02-06 [2] CRAN (R 4.4.0)
##   periodicDNA                                     1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   permute                                         0.9-7          2022-01-27 [2] CRAN (R 4.4.0)
##   PFAM.db                                         3.18.0         2024-01-16 [2] Bioconductor
##   pfamAnalyzeR                                    1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pgca                                            1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pgxRpi                                          0.99.10        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   phangorn                                        2.11.1         2023-01-23 [2] CRAN (R 4.4.0)
##   phantasus                                       1.23.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   phantasusLite                                   1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   phastCons100way.UCSC.hg19                       3.7.2          2024-01-16 [2] Bioconductor
##   phastCons100way.UCSC.hg38                       3.7.1          2024-01-16 [2] Bioconductor
##   phastCons30way.UCSC.hg38                        3.13.0         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   phateR                                          1.0.7          2021-02-12 [2] CRAN (R 4.4.0)
##   pheatmap                                        1.0.12         2019-01-04 [2] CRAN (R 4.4.0)
##   PhenoGeneRanker                                 1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   phenomis                                        1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   phenopath                                       1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   phenoTest                                       1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PhenStat                                        2.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   philentropy                                     0.8.0          2023-12-02 [2] CRAN (R 4.4.0)
##   philr                                           1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PhIPData                                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   phosphonormalizer                               1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   phosphoricons                                   0.2.0          2023-05-17 [2] CRAN (R 4.4.0)
##   PhosR                                           1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   phyclust                                        0.1-34         2023-09-06 [2] CRAN (R 4.4.0)
##   phylobase                                       0.8.10         2020-03-01 [2] CRAN (R 4.4.0)
##   phylogram                                       2.1.0          2018-06-25 [2] CRAN (R 4.4.0)
##   phylolm                                         2.6.2          2020-06-22 [2] CRAN (R 4.4.0)
##   PhyloProfile                                    1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PhyloProfileData                                1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   phyloseq                                        1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   phytools                                        2.1-1          2024-01-09 [2] CRAN (R 4.4.0)
##   Pi                                              2.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   piano                                           2.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pickgene                                        1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PICS                                            2.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Pigengene                                       1.29.10        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   piggyback                                       0.1.5          2023-07-10 [2] CRAN (R 4.4.0)
##   pillar                                          1.9.0          2023-03-22 [2] CRAN (R 4.4.0)
##   pinfsc50                                        1.3.0          2023-12-05 [2] CRAN (R 4.4.0)
##   PING                                            2.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pingr                                           2.0.3          2023-12-10 [2] CRAN (R 4.4.0)
##   pipeComp                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pipeFrame                                       1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pixmap                                          0.4-12         2021-01-29 [2] CRAN (R 4.4.0)
##   pkgbuild                                        1.4.3          2023-12-10 [2] CRAN (R 4.4.0)
##   pkgconfig                                       2.0.3          2019-09-22 [2] CRAN (R 4.4.0)
##   pkgdown                                         2.0.7          2022-12-14 [2] CRAN (R 4.4.0)
##   pkgload                                         1.3.4          2024-01-16 [2] CRAN (R 4.4.0)
##   pkgndep                                         1.99.3         2023-10-13 [2] CRAN (R 4.4.0)
##   planet                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   planttfhunter                                   1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   plasmodiumanophelescdf                          2.18.0         2024-01-16 [2] Bioconductor
##   plasmut                                         1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   plgem                                           1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   plier                                           1.73.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PloGO2                                          1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   plogr                                           0.2.0          2018-03-25 [2] CRAN (R 4.4.0)
##   plot3D                                          1.4            2021-05-22 [2] CRAN (R 4.4.0)
##   plot3Drgl                                       1.0.4          2023-01-19 [2] CRAN (R 4.4.0)
##   plotgardener                                    1.9.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   plotgardenerData                                1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   plotGrouper                                     1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   plotly                                          4.10.4         2024-01-13 [2] CRAN (R 4.4.0)
##   plotmo                                          3.6.2          2022-05-21 [2] CRAN (R 4.4.0)
##   plotrix                                         3.8-4          2023-11-10 [2] CRAN (R 4.4.0)
##   plotROC                                         2.3.1          2023-10-06 [2] CRAN (R 4.4.0)
##   PlotTools                                       0.3.0          2023-10-30 [2] CRAN (R 4.4.0)
##   PLPE                                            1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pls                                             2.8-3          2023-11-17 [2] CRAN (R 4.4.0)
##   PLSDAbatch                                      0.99.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   plsgenomics                                     1.5-2.1        2023-11-27 [2] CRAN (R 4.4.0)
##   plsVarSel                                       0.9.10         2023-01-12 [2] CRAN (R 4.4.0)
##   plyinteractions                                 1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   plyr                                            1.8.9          2023-10-02 [2] CRAN (R 4.4.0)
##   plyranges                                       1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PMA                                             1.2-2          2023-07-20 [2] CRAN (R 4.4.0)
##   PMCMRplus                                       1.9.10         2023-12-10 [2] CRAN (R 4.4.0)
##   pmm                                             1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pmp                                             1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   png                                             0.1-8          2022-11-29 [2] CRAN (R 4.4.0)
##   PoDCall                                         1.11.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   podkat                                          1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pogos                                           1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   poibin                                          1.5            2020-01-08 [2] CRAN (R 4.4.0)
##   PoiClaClu                                       1.0.2.1        2019-01-04 [2] CRAN (R 4.4.0)
##   polspline                                       1.1.24         2023-10-26 [2] CRAN (R 4.4.0)
##   Polychrome                                      1.5.1          2022-05-03 [2] CRAN (R 4.4.0)
##   polyclip                                        1.10-6         2023-09-27 [2] CRAN (R 4.4.0)
##   polyester                                       1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   polylabelr                                      0.2.0          2020-04-19 [2] CRAN (R 4.4.0)
##   polynom                                         1.4-1          2022-04-11 [2] CRAN (R 4.4.0)
##   PolynomF                                        2.0-5          2022-05-02 [2] CRAN (R 4.4.0)
##   PolyPhen.Hsapiens.dbSNP131                      1.0.2          2024-01-16 [2] Bioconductor
##   POMA                                            1.13.12        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pool                                            1.0.2          2024-01-18 [2] CRAN (R 4.4.0)
##   poolr                                           1.1-1          2022-01-26 [2] CRAN (R 4.4.0)
##   poorman                                         0.2.7          2023-10-30 [2] CRAN (R 4.4.0)
##   posterior                                       1.5.0          2023-10-31 [2] CRAN (R 4.4.0)
##   poweRlaw                                        0.80.0         2024-01-25 [2] CRAN (R 4.4.0)
##   powerTCR                                        1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   POWSC                                           1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ppclust                                         1.1.0.1        2023-12-13 [2] CRAN (R 4.4.0)
##   ppcor                                           1.1            2015-12-03 [2] CRAN (R 4.4.0)
##   ppcseq                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PPInfer                                         1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pqsfinder                                       2.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   prabclus                                        2.3-3          2023-10-24 [2] CRAN (R 4.4.0)
##   pracma                                          2.4.4          2023-11-10 [2] CRAN (R 4.4.0)
##   praise                                          1.0.0          2015-08-11 [2] CRAN (R 4.4.0)
##   pram                                            1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   praznik                                         11.0.0         2022-05-20 [2] CRAN (R 4.4.0)
##   prebs                                           1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   prebsdata                                       1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   preciseTAD                                      1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   preciseTADhub                                   1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   precrec                                         0.14.4         2023-10-11 [2] CRAN (R 4.4.0)
##   PREDA                                           1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PREDAsampledata                                 0.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   prediction                                      0.3.14         2019-06-17 [2] CRAN (R 4.4.0)
##   preprocessCore                                  1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   preseqR                                         4.0.0          2018-06-27 [2] CRAN (R 4.4.0)
##   prettydoc                                       0.4.1          2021-01-10 [2] CRAN (R 4.4.0)
##   prettyGraphs                                    2.1.6          2018-12-18 [2] CRAN (R 4.4.0)
##   prettyunits                                     1.2.0          2023-09-24 [2] CRAN (R 4.4.0)
##   primirTSS                                       1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PRIMME                                          3.2-6          2024-01-09 [2] CRAN (R 4.4.0)
##   PrInCE                                          1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   princurve                                       2.1.6          2021-01-18 [2] CRAN (R 4.4.0)
##   printr                                          0.3            2023-03-08 [2] CRAN (R 4.4.0)
##   prismatic                                       1.1.1          2022-08-15 [2] CRAN (R 4.4.0)
##   proActiv                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   proBAMr                                         1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pROC                                            1.18.5         2023-11-01 [2] CRAN (R 4.4.0)
##   PROcess                                         1.79.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   processx                                        3.8.3          2023-12-10 [2] CRAN (R 4.4.0)
##   procoil                                         2.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   proDA                                           1.17.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ProData                                         1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   prodlim                                         2023.08.28     2023-08-28 [2] CRAN (R 4.4.0)
##   profileModel                                    0.6.1          2021-01-08 [2] CRAN (R 4.4.0)
##   profileScoreDist                                1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   profmem                                         0.6.0          2020-12-13 [2] CRAN (R 4.4.0)
##   profvis                                         0.3.8          2023-05-02 [2] CRAN (R 4.4.0)
##   progeny                                         1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   progress                                        1.2.3          2023-12-06 [2] CRAN (R 4.4.0)
##   progressr                                       0.14.0         2023-08-10 [2] CRAN (R 4.4.0)
##   proj4                                           1.0-14         2024-01-14 [2] CRAN (R 4.4.0)
##   projectR                                        1.19.01        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pRoloc                                          1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pRolocdata                                      1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   pRolocGUI                                       2.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PROMISE                                         1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   promises                                        1.2.1          2023-08-10 [2] CRAN (R 4.4.0)
##   PROPER                                          1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PROPS                                           1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Prostar                                         1.35.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   prostateCancerCamcap                            1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   prostateCancerGrasso                            1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   prostateCancerStockholm                         1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   prostateCancerTaylor                            1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   prostateCancerVarambally                        1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   proteasy                                        1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   proteinProfiles                                 1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ProteoDisco                                     1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ProteoMM                                        1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   protGear                                        1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ProtGenerics                                    1.35.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   proto                                           1.0.0          2016-10-29 [2] CRAN (R 4.4.0)
##   protolite                                       2.3.0          2023-09-25 [2] CRAN (R 4.4.0)
##   protr                                           1.7-0          2023-10-30 [2] CRAN (R 4.4.0)
##   protViz                                         0.7.9          2023-12-12 [2] CRAN (R 4.4.0)
##   proxy                                           0.4-27         2022-06-09 [2] CRAN (R 4.4.0)
##   proxyC                                          0.3.4          2023-10-25 [2] CRAN (R 4.4.0)
##   PRROC                                           1.3.1          2018-06-19 [2] CRAN (R 4.4.0)
##   pryr                                            0.1.6          2023-01-17 [2] CRAN (R 4.4.0)
##   ps                                              1.7.6          2024-01-18 [2] CRAN (R 4.4.0)
##   PSCBS                                           0.66.0         2021-10-23 [2] CRAN (R 4.4.0)
##   pscl                                            1.5.5.1        2023-05-10 [2] CRAN (R 4.4.0)
##   PSEA                                            1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   psichomics                                      1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PSMatch                                         1.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pspline                                         1.0-19         2022-02-20 [2] CRAN (R 4.4.0)
##   psych                                           2.4.1          2024-01-18 [2] CRAN (R 4.4.0)
##   psygenet2r                                      1.35.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ptairData                                       1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ptairMS                                         1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PtH2O2lipids                                    1.29.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ptw                                             1.9-16         2022-01-19 [2] CRAN (R 4.4.0)
##   puma                                            3.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pumadata                                        2.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   PureCN                                          2.9.4          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   purrr                                           1.0.2          2023-08-10 [2] CRAN (R 4.4.0)
##   pushbar                                         0.1.0          2019-03-15 [2] CRAN (R 4.4.0)
##   pvac                                            1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pvca                                            1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pvclust                                         2.2-0          2019-11-19 [2] CRAN (R 4.4.0)
##   Pviz                                            1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PWMEnrich                                       4.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   PWMEnrich.Dmelanogaster.background              4.37.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   PWMEnrich.Hsapiens.background                   4.37.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   PWMEnrich.Mmusculus.background                  4.37.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   pwOmics                                         1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   pwr                                             1.3-0          2020-03-17 [2] CRAN (R 4.4.0)
##   qap                                             0.1-2          2022-06-27 [2] CRAN (R 4.4.0)
##   qckitfastq                                      1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qcmetrics                                       1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qdapRegex                                       0.7.8          2023-10-17 [2] CRAN (R 4.4.0)
##   qdapTools                                       1.3.7          2023-05-10 [2] CRAN (R 4.4.0)
##   QDNAseq                                         1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   QDNAseq.hg19                                    1.33.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   QDNAseq.mm10                                    1.33.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   QFeatures                                       1.13.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qgraph                                          1.9.8          2023-11-03 [2] CRAN (R 4.4.0)
##   qmtools                                         1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qpcR                                            1.4-1          2018-06-14 [2] CRAN (R 4.4.0)
##   qpcrNorm                                        1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qpdf                                            1.3.2          2023-03-17 [2] CRAN (R 4.4.0)
##   qpgraph                                         2.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qPLEXanalyzer                                   1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qPLEXdata                                       1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   qqconf                                          1.3.2          2023-04-14 [2] CRAN (R 4.4.0)
##   qqman                                           0.1.9          2023-08-23 [2] CRAN (R 4.4.0)
##   qs                                              0.25.7         2023-12-06 [2] CRAN (R 4.4.0)
##   qsea                                            1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qsmooth                                         1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   QSutils                                         1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qsvaR                                           1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qtl                                             1.66           2023-11-27 [2] CRAN (R 4.4.0)
##   QTLExperiment                                   1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Qtlizer                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   quadprog                                        1.5-8          2019-11-20 [2] CRAN (R 4.4.0)
##   qualV                                           0.3-5          2023-07-02 [2] CRAN (R 4.4.0)
##   quanteda                                        3.3.1          2023-05-18 [2] CRAN (R 4.4.0)
##   quantiseqr                                      1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   quantmod                                        0.4.25         2023-08-22 [2] CRAN (R 4.4.0)
##   quantreg                                        5.97           2023-08-19 [2] CRAN (R 4.4.0)
##   quantro                                         1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   quantsmooth                                     1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   quarto                                          1.3            2023-09-19 [2] CRAN (R 4.4.0)
##   QuartPAC                                        1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   QuasR                                           1.43.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   QuaternaryProd                                  1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   QUBIC                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   QUBICdata                                       1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   questionr                                       0.7.8          2023-01-31 [2] CRAN (R 4.4.0)
##   QuickJSR                                        1.1.0          2024-01-21 [2] CRAN (R 4.4.0)
##   qusage                                          2.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qvalue                                          2.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   qvcalc                                          1.0.3          2023-05-26 [2] CRAN (R 4.4.0)
##   R.cache                                         0.16.0         2022-07-21 [2] CRAN (R 4.4.0)
##   R.devices                                       2.17.1         2022-06-21 [2] CRAN (R 4.4.0)
##   R.filesets                                      2.15.1         2024-01-24 [2] CRAN (R 4.4.0)
##   R.huge                                          0.10.1         2024-01-24 [2] CRAN (R 4.4.0)
##   R.matlab                                        3.7.0          2022-08-25 [2] CRAN (R 4.4.0)
##   R.methodsS3                                     1.8.2          2022-06-13 [2] CRAN (R 4.4.0)
##   R.oo                                            1.26.0         2024-01-24 [2] CRAN (R 4.4.0)
##   R.rsp                                           0.45.0         2022-06-27 [2] CRAN (R 4.4.0)
##   R.utils                                         2.12.3         2023-11-18 [2] CRAN (R 4.4.0)
##   r2glmm                                          0.1.2          2017-08-05 [2] CRAN (R 4.4.0)
##   R2HTML                                          2.3.3          2022-05-23 [2] CRAN (R 4.4.0)
##   R2jags                                          0.7-1          2021-08-05 [2] CRAN (R 4.4.0)
##   R2WinBUGS                                       2.1-22         2023-12-16 [2] CRAN (R 4.4.0)
##   R3CPET                                          1.35.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   r3Cseq                                          1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   r3dmol                                          0.1.2          2021-03-14 [2] CRAN (R 4.4.0)
##   R453Plus1Toolbox                                1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   R4RNA                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   R6                                              2.5.1          2021-08-19 [2] CRAN (R 4.4.0)
##   R6P                                             0.3.0          2022-10-02 [2] CRAN (R 4.4.0)
##   radiant.data                                    1.6.3          2023-12-17 [2] CRAN (R 4.4.0)
##   rae230a.db                                      3.13.0         2024-01-16 [2] Bioconductor
##   rae230aprobe                                    2.18.0         2024-01-16 [2] Bioconductor
##   raer                                            1.1.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   raerdata                                        1.1.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   rafalib                                         1.0.0          2015-08-09 [2] CRAN (R 4.4.0)
##   ragg                                            1.2.7          2023-12-11 [2] CRAN (R 4.4.0)
##   RaggedExperiment                                1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RAIDS                                           1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rain                                            1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rainbow                                         3.8            2024-01-23 [2] CRAN (R 4.4.0)
##   ramr                                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ramwas                                          1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   randomcoloR                                     1.1.0.1        2019-11-24 [2] CRAN (R 4.4.0)
##   randomForest                                    4.7-1.1        2022-05-23 [2] CRAN (R 4.4.0)
##   randomForestSRC                                 3.2.3          2023-12-06 [2] CRAN (R 4.4.0)
##   randomizr                                       1.0.0          2023-08-10 [2] CRAN (R 4.4.0)
##   RandomWalkRestartMH                             1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   randPack                                        1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   randRotation                                    1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   randtests                                       1.0.1          2022-06-20 [2] CRAN (R 4.4.0)
##   randtoolbox                                     2.0.4          2023-01-28 [2] CRAN (R 4.4.0)
##   ranger                                          0.16.0         2023-11-12 [2] CRAN (R 4.4.0)
##   RankAggreg                                      0.6.6          2020-05-09 [2] CRAN (R 4.4.0)
##   RankProd                                        3.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RANN                                            2.6.1          2019-01-08 [2] CRAN (R 4.4.0)
##   rapiclient                                      0.1.3          2020-01-17 [2] CRAN (R 4.4.0)
##   rapidjsonr                                      1.2.0          2020-03-08 [2] CRAN (R 4.4.0)
##   RApiSerialize                                   0.1.2          2022-08-25 [2] CRAN (R 4.4.0)
##   rappdirs                                        0.3.3          2021-01-31 [2] CRAN (R 4.4.0)
##   rapportools                                     1.1            2022-03-22 [2] CRAN (R 4.4.0)
##   RAREsim                                         1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RareVariantVis                                  2.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rARPACK                                         0.11-0         2016-03-10 [2] CRAN (R 4.4.0)
##   Rarr                                            1.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   raster                                          3.6-26         2023-10-14 [2] CRAN (R 4.4.0)
##   rat2302frmavecs                                 0.99.11        2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   ratelimitr                                      0.4.1          2018-10-07 [2] CRAN (R 4.4.0)
##   Rattus.norvegicus                               1.3.1          2024-01-16 [2] Bioconductor
##   rawrr                                           1.11.11        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RbcBook1                                        1.71.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rbec                                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rbenchmark                                      1.0.0          2012-08-30 [2] CRAN (R 4.4.0)
##   rBeta2009                                       1.0            2012-03-01 [2] CRAN (R 4.4.0)
##   RBGL                                            1.79.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rbibutils                                       2.2.16         2023-10-25 [2] CRAN (R 4.4.0)
##   rbioapi                                         0.8.0          2023-09-30 [2] CRAN (R 4.4.0)
##   RBioFormats                                     1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RBioinf                                         1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rBiopaxParser                                   2.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RBM                                             1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rbowtie                                         1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rbowtie2                                        2.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rbsurv                                          2.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rbwa                                            1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rcapture                                        1.4-4          2022-05-04 [2] CRAN (R 4.4.0)
##   RCASPAR                                         1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rcdk                                            3.8.1          2023-07-01 [2] CRAN (R 4.4.0)
##   rcdklibs                                        2.8            2022-09-25 [2] CRAN (R 4.4.0)
##   rcellminer                                      2.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rcellminerData                                  2.25.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   rCGH                                            1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RCircos                                         1.2.2          2021-12-19 [2] CRAN (R 4.4.0)
##   RcisTarget                                      1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RcisTarget.hg19.motifDBs.cisbpOnly.500bp        1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   rclipboard                                      0.2.1          2023-11-15 [2] CRAN (R 4.4.0)
##   RCM                                             1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rcmdcheck                                       1.4.0          2021-09-27 [2] CRAN (R 4.4.0)
##   Rcollectl                                       1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RColorBrewer                                    1.1-3          2022-04-03 [2] CRAN (R 4.4.0)
##   rcompanion                                      2.4.34         2023-09-17 [2] CRAN (R 4.4.0)
##   Rcpi                                            1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rcpp                                            1.0.12         2024-01-09 [2] CRAN (R 4.4.0)
##   RcppAlgos                                       2.8.3          2023-12-10 [2] CRAN (R 4.4.0)
##   RcppAnnoy                                       0.0.22         2024-01-23 [2] CRAN (R 4.4.0)
##   RcppArmadillo                                   0.12.6.6.1     2023-12-04 [2] CRAN (R 4.4.0)
##   RcppCCTZ                                        0.2.12         2022-11-06 [2] CRAN (R 4.4.0)
##   RcppDate                                        0.0.3          2021-05-19 [2] CRAN (R 4.4.0)
##   RcppDE                                          0.1.7          2022-12-20 [2] CRAN (R 4.4.0)
##   RcppDist                                        0.1.1          2018-10-28 [2] CRAN (R 4.4.0)
##   RcppEigen                                       0.3.3.9.4      2023-11-02 [2] CRAN (R 4.4.0)
##   RcppGSL                                         0.3.13         2023-01-13 [2] CRAN (R 4.4.0)
##   RcppHMM                                         1.2.2          2017-11-21 [2] CRAN (R 4.4.0)
##   RcppHNSW                                        0.5.0          2023-09-19 [2] CRAN (R 4.4.0)
##   RcppHungarian                                   0.3            2023-09-05 [2] CRAN (R 4.4.0)
##   RcppInt64                                       0.0.4          2023-12-09 [2] CRAN (R 4.4.0)
##   RcppML                                          0.3.7          2021-09-21 [2] CRAN (R 4.4.0)
##   RcppNumerical                                   0.6-0          2023-09-06 [2] CRAN (R 4.4.0)
##   RcppParallel                                    5.1.7          2023-02-27 [2] CRAN (R 4.4.0)
##   RcppProgress                                    0.4.2          2020-02-06 [2] CRAN (R 4.4.0)
##   RcppRoll                                        0.3.0          2018-06-05 [2] CRAN (R 4.4.0)
##   RcppSpdlog                                      0.0.16         2024-01-12 [2] CRAN (R 4.4.0)
##   RcppThread                                      2.1.6          2023-10-18 [2] CRAN (R 4.4.0)
##   RcppTOML                                        0.2.2          2023-01-29 [2] CRAN (R 4.4.0)
##   RcppZiggurat                                    0.1.6          2020-10-20 [2] CRAN (R 4.4.0)
##   RCSL                                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RCurl                                           1.98-1.14      2024-01-09 [2] CRAN (R 4.4.0)
##   Rcwl                                            1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RcwlPipelines                                   1.19.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RCX                                             1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RCy3                                            2.23.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RCyjs                                           2.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rDGIdb                                          1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rdisop                                          1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rdist                                           0.0.5          2020-05-04 [2] CRAN (R 4.4.0)
##   Rdpack                                          2.6            2023-11-08 [2] CRAN (R 4.4.0)
##   RDRToolbox                                      1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   reactable                                       0.4.4          2023-03-12 [2] CRAN (R 4.4.0)
##   reactome.db                                     1.86.2         2024-01-16 [2] Bioconductor
##   ReactomeContentService4R                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ReactomeGraph4R                                 1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ReactomeGSA                                     1.17.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ReactomeGSA.data                                1.17.1         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ReactomePA                                      1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   reactR                                          0.5.0          2023-10-11 [2] CRAN (R 4.4.0)
##   readbitmap                                      0.1.5          2018-06-27 [2] CRAN (R 4.4.0)
##   readBrukerFlexData                              1.9.2          2024-01-22 [2] CRAN (R 4.4.0)
##   reader                                          1.0.6          2017-01-03 [2] CRAN (R 4.4.0)
##   readJDX                                         0.6.4          2023-11-18 [2] CRAN (R 4.4.0)
##   readMzXmlData                                   2.8.3          2023-08-19 [2] CRAN (R 4.4.0)
##   readODS                                         2.1.0          2023-09-10 [2] CRAN (R 4.4.0)
##   ReadqPCR                                        1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   readr                                           2.1.5          2024-01-10 [2] CRAN (R 4.4.0)
##   readxl                                          1.4.3          2023-07-06 [2] CRAN (R 4.4.0)
##   rearrr                                          0.3.3          2023-01-18 [2] CRAN (R 4.4.0)
##   REBET                                           1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rebook                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rebus                                           0.1-3          2017-04-25 [2] CRAN (R 4.4.0)
##   rebus.base                                      0.0-3          2017-04-25 [2] CRAN (R 4.4.0)
##   rebus.datetimes                                 0.0-2          2022-11-03 [2] CRAN (R 4.4.0)
##   rebus.numbers                                   0.0-1          2015-12-16 [2] CRAN (R 4.4.0)
##   rebus.unicode                                   0.0-2          2017-01-03 [2] CRAN (R 4.4.0)
##   receptLoss                                      1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   recipes                                         1.0.9          2023-12-13 [2] CRAN (R 4.4.0)
##   reconsi                                         1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RecordLinkage                                   0.4-12.4       2022-11-08 [2] CRAN (R 4.4.0)
##   recount                                         1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   recount3                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   recountmethylation                              1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   recountWorkflow                                 1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   recoup                                          1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RedeR                                           2.99.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RedisParam                                      1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   REDseq                                          1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   redux                                           1.1.4          2023-11-30 [2] CRAN (R 4.4.0)
##   RefManageR                                      1.4.0          2022-09-30 [2] CRAN (R 4.4.0)
##   RefPlus                                         1.73.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RegEnrich                                       1.13.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   regionalpcs                                     1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RegionalST                                      1.1.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   regioneR                                        1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   regioneReloaded                                 1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   regionReport                                    1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   registry                                        0.5-1          2019-03-05 [2] CRAN (R 4.4.0)
##   RegParallel                                     1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   regsplice                                       1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   regutools                                       1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   relations                                       0.6-13         2023-03-07 [2] CRAN (R 4.4.0)
##   reldist                                         1.7-2          2023-02-17 [2] CRAN (R 4.4.0)
##   relimp                                          1.0-5          2016-03-30 [2] CRAN (R 4.4.0)
##   remaCor                                         0.0.16         2023-06-21 [2] CRAN (R 4.4.0)
##   rematch                                         2.0.0          2023-08-30 [2] CRAN (R 4.4.0)
##   rematch2                                        2.1.2          2020-05-01 [2] CRAN (R 4.4.0)
##   remotes                                         2.4.2.1        2023-07-18 [2] CRAN (R 4.4.0)
##   REMP                                            1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rentrez                                         1.2.3          2020-11-10 [2] CRAN (R 4.4.0)
##   renv                                            1.0.3          2023-09-19 [2] CRAN (R 4.4.0)
##   repmis                                          0.5            2016-02-07 [2] CRAN (R 4.4.0)
##   repo                                            2.1.5          2020-02-08 [2] CRAN (R 4.4.0)
##   ReportingTools                                  2.43.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   reportr                                         1.3.0          2018-10-26 [2] CRAN (R 4.4.0)
##   reportROC                                       3.6            2022-06-17 [2] CRAN (R 4.4.0)
##   repr                                            1.1.6          2023-01-26 [2] CRAN (R 4.4.0)
##   reprex                                          2.1.0          2024-01-11 [2] CRAN (R 4.4.0)
##   RepViz                                          1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   reshape                                         0.8.9          2022-04-12 [2] CRAN (R 4.4.0)
##   reshape2                                        1.4.4          2020-04-09 [2] CRAN (R 4.4.0)
##   ResidualMatrix                                  1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RESOLVE                                         1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   restfulr                                        0.0.15         2022-06-16 [2] CRAN (R 4.4.0)
##   restfulSE                                       1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   restfulSEData                                   1.25.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   reticulate                                      1.34.0         2023-10-12 [2] CRAN (R 4.4.0)
##   retrofit                                        1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ReUseData                                       1.3.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rex                                             1.2.1          2021-11-26 [2] CRAN (R 4.4.0)
##   rexposome                                       1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rfaRm                                           1.15.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rfast                                           2.1.0          2023-11-09 [2] CRAN (R 4.4.0)
##   Rfastp                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RforProteomics                                  1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   rfPred                                          1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rGADEM                                          2.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rGenomeTracks                                   1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rGenomeTracksData                               0.99.0         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   rgl                                             1.2.8          2023-11-29 [2] CRAN (R 4.4.0)
##   RGMQLlib                                        1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RgnTX                                           1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rgoslin                                         1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RGraph2js                                       1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rgraphviz                                       2.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RGSEA                                           1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rgsepd                                          1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rhandsontable                                   0.3.8          2021-05-27 [2] CRAN (R 4.4.0)
##   rhdf5                                           2.47.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rhdf5client                                     1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rhdf5filters                                    1.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rhdf5lib                                        1.25.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rheumaticConditionWOLLBOLD                      1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   Rhisat2                                         1.19.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RhpcBLASctl                                     0.23-42        2023-02-11 [2] CRAN (R 4.4.0)
##   Rhtslib                                         2.99.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RiboCrypt                                       1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RiboDiPA                                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RiboProfiling                                   1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ribor                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ribosomeProfilingQC                             1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ridge                                           3.3            2022-04-11 [2] CRAN (R 4.4.0)
##   rifi                                            1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rifiComparative                                 1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RImmPort                                        1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rintrojs                                        0.3.4          2024-01-11 [2] CRAN (R 4.4.0)
##   rio                                             1.0.1          2023-09-19 [2] CRAN (R 4.4.0)
##   RIPAT                                           1.13.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Risa                                            1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RISmed                                          2.3.0          2021-07-05 [2] CRAN (R 4.4.0)
##   RITAN                                           1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RITANdata                                       1.27.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   ritis                                           1.0.0          2021-02-02 [2] CRAN (R 4.4.0)
##   RIVER                                           1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rjags                                           4-15           2023-11-30 [2] CRAN (R 4.4.0)
##   rJava                                           1.0-11         2024-01-26 [2] CRAN (R 4.4.0)
##   RJMCMCNucleosomes                               1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rjson                                           0.2.21         2022-01-09 [2] CRAN (R 4.4.0)
##   rjsoncons                                       1.2.0          2024-01-26 [2] CRAN (R 4.4.0)
##   RJSONIO                                         1.3-1.9        2023-11-27 [2] CRAN (R 4.4.0)
##   Rlab                                            4.0            2022-05-04 [2] CRAN (R 4.4.0)
##   Rlabkey                                         3.2.0          2024-01-09 [2] CRAN (R 4.4.0)
##   rlang                                           1.1.3          2024-01-10 [2] CRAN (R 4.4.0)
##   RLassoCox                                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rlecuyer                                        0.3-8          2023-12-02 [2] CRAN (R 4.4.0)
##   RLHub                                           1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   rlist                                           0.4.6.2        2021-09-03 [2] CRAN (R 4.4.0)
##   RLMM                                            1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RLSeq                                           1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rmagpie                                         1.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RMallow                                         1.1            2020-02-07 [2] CRAN (R 4.4.0)
##   RMariaDB                                        1.3.1          2023-10-26 [2] CRAN (R 4.4.0)
##   rmarkdown                                       2.25           2023-09-18 [2] CRAN (R 4.4.0)
##   RMassBank                                       3.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RMassBankData                                   1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   rmdformats                                      1.0.4          2022-05-17 [2] CRAN (R 4.4.0)
##   rmelting                                        1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rmeta                                           3.0            2018-03-20 [2] CRAN (R 4.4.0)
##   rmio                                            0.4.0          2022-02-17 [2] CRAN (R 4.4.0)
##   Rmisc                                           1.5.1          2022-05-02 [2] CRAN (R 4.4.0)
##   Rmixmod                                         2.1.10         2023-12-13 [2] CRAN (R 4.4.0)
##   Rmmquant                                        1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rmpfr                                           0.9-5          2024-01-21 [2] CRAN (R 4.4.0)
##   Rmpi                                            0.7-2          2023-12-11 [2] CRAN (R 4.4.0)
##   rms                                             6.7-1          2023-09-12 [2] CRAN (R 4.4.0)
##   RMSNumpress                                     1.0.1          2021-02-04 [2] CRAN (R 4.4.0)
##   rmspc                                           1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RMTstat                                         0.3.1          2022-04-12 [2] CRAN (R 4.4.0)
##   rmutil                                          1.1.10         2022-10-27 [2] CRAN (R 4.4.0)
##   RMySQL                                          0.10.27        2023-12-04 [2] CRAN (R 4.4.0)
##   rmzqc                                           0.5.3          2023-08-25 [2] CRAN (R 4.4.0)
##   RNAAgeCalc                                      1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAdecay                                        1.23.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rnaEditr                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAinteract                                     1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAinteractMAPK                                 1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAmodR                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAmodR.AlkAnilineSeq                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAmodR.Data                                    1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAmodR.ML                                      1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAmodR.RiboMethSeq                             1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAsense                                        1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAseq123                                       1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   rnaseqcomp                                      1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAseqCovarImpute                               1.1.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNAseqData.HNRNPC.bam.chr14                     0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   rnaseqDTU                                       1.23.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   rnaseqGene                                      1.27.2         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   RnaSeqGeneEdgeRQL                               1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   RNASeqPower                                     1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RnaSeqSampleSize                                2.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RnaSeqSampleSizeData                            1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RnBeads                                         2.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RnBeads.hg19                                    1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RnBeads.hg38                                    1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RnBeads.mm10                                    2.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RnBeads.mm9                                     1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RnBeads.rn5                                     1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   rncl                                            0.8.7          2023-01-08 [2] CRAN (R 4.4.0)
##   RNeXML                                          2.4.11         2023-02-01 [2] CRAN (R 4.4.0)
##   rngtools                                        1.5.2          2021-09-20 [2] CRAN (R 4.4.0)
##   rngWELL                                         0.10-9         2023-01-16 [2] CRAN (R 4.4.0)
##   RNifti                                          1.5.1          2023-11-28 [2] CRAN (R 4.4.0)
##   Rnits                                           1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RNOmni                                          1.0.1.2        2023-09-11 [2] CRAN (R 4.4.0)
##   roar                                            1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   roastgsa                                        1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   robust                                          0.7-3          2023-12-05 [2] CRAN (R 4.4.0)
##   robustbase                                      0.99-2         2024-01-27 [2] CRAN (R 4.4.0)
##   RobustRankAggreg                                1.2.1          2022-10-03 [2] CRAN (R 4.4.0)
##   ROC                                             1.79.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ROCit                                           2.1.1          2020-06-14 [2] CRAN (R 4.4.0)
##   ROCpAI                                          1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ROCR                                            1.0-11         2020-05-02 [2] CRAN (R 4.4.0)
##   RolDE                                           1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rols                                            2.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ROntoTools                                      2.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rook                                            1.2            2022-11-07 [2] CRAN (R 4.4.0)
##   rootSolve                                       1.8.2.4        2023-09-21 [2] CRAN (R 4.4.0)
##   ropls                                           1.35.4         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   roptim                                          0.1.6          2022-08-06 [2] CRAN (R 4.4.0)
##   rorcid                                          0.7.0          2021-01-20 [2] CRAN (R 4.4.0)
##   ROSeq                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rotl                                            3.1.0          2023-06-15 [2] CRAN (R 4.4.0)
##   ROTS                                            1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   roxygen2                                        7.3.1          2024-01-22 [2] CRAN (R 4.4.0)
##   RPA                                             1.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rpart                                           4.1.23         2023-12-05 [3] CRAN (R 4.4.0)
##   rpart.plot                                      3.1.1          2022-05-21 [2] CRAN (R 4.4.0)
##   rphylopic                                       1.3.0          2023-12-20 [2] CRAN (R 4.4.0)
##   RPMM                                            1.25           2017-02-28 [2] CRAN (R 4.4.0)
##   RPostgres                                       1.4.6          2023-10-22 [2] CRAN (R 4.4.0)
##   RPostgreSQL                                     0.7-6          2024-01-11 [2] CRAN (R 4.4.0)
##   rprimer                                         1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rprojroot                                       2.0.4          2023-11-05 [2] CRAN (R 4.4.0)
##   RProtoBufLib                                    2.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rpx                                             2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rqc                                             1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rqt                                             1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rqubic                                          1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rrBLUP                                          4.6.3          2023-12-10 [2] CRAN (R 4.4.0)
##   RRBSdata                                        1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   rrcov                                           1.7-4          2023-06-24 [2] CRAN (R 4.4.0)
##   rRDP                                            1.37.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rRDPData                                        1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   rredlist                                        0.7.1          2022-11-11 [2] CRAN (R 4.4.0)
##   RRHO                                            1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rrvgo                                           1.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rsample                                         1.2.0          2023-08-23 [2] CRAN (R 4.4.0)
##   Rsamtools                                       2.19.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rsbml                                           2.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rsconnect                                       1.2.0          2023-12-15 [2] CRAN (R 4.4.0)
##   rScudo                                          1.19.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rsemmed                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RSeqAn                                          1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rslurm                                          0.6.2          2023-02-24 [2] CRAN (R 4.4.0)
##   rsm                                             2.10.4         2023-09-20 [2] CRAN (R 4.4.0)
##   RSNNS                                           0.4-17         2023-11-30 [2] CRAN (R 4.4.0)
##   Rsolnp                                          1.16           2015-12-28 [2] CRAN (R 4.4.0)
##   rsparse                                         0.5.1          2022-09-11 [2] CRAN (R 4.4.0)
##   RSpectra                                        0.16-1         2022-04-24 [2] CRAN (R 4.4.0)
##   rSpectral                                       1.0.0.10       2023-01-18 [2] CRAN (R 4.4.0)
##   rsq                                             2.6            2023-10-22 [2] CRAN (R 4.4.0)
##   RSQLite                                         2.3.5          2024-01-21 [2] CRAN (R 4.4.0)
##   rstan                                           2.32.5         2024-01-10 [2] CRAN (R 4.4.0)
##   rstantools                                      2.3.1.1        2023-07-18 [2] CRAN (R 4.4.0)
##   rstatix                                         0.7.2          2023-02-01 [2] CRAN (R 4.4.0)
##   rstudioapi                                      0.15.0         2023-07-07 [2] CRAN (R 4.4.0)
##   Rsubread                                        2.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rsvd                                            1.0.5          2021-04-16 [2] CRAN (R 4.4.0)
##   rsvg                                            2.6.0          2023-10-08 [2] CRAN (R 4.4.0)
##   RSVSim                                          1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rSWeeP                                          1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCA                                            1.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGA                                           1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGA.clinical                                  20151101.33.0  2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGA.CNV                                       1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGA.methylation                               1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGA.miRNASeq                                  1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGA.mRNA                                      1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGA.mutations                                 20151101.33.0  2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGA.PANCAN12                                  1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGA.rnaseq                                    20151101.33.0  2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGA.RPPA                                      1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RTCGAToolbox                                    2.33.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rTensor                                         1.4.8          2021-05-15 [2] CRAN (R 4.4.0)
##   RTN                                             2.27.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RTNduals                                        1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RTNsurvival                                     1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RTopper                                         1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rtpca                                           1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rtracklayer                                     1.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rtreemix                                        1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RTriangle                                       1.6-0.13       2024-01-09 [2] CRAN (R 4.4.0)
##   rTRM                                            1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rTRMui                                          1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Rtsne                                           0.17           2023-12-07 [2] CRAN (R 4.4.0)
##   Rttf2pt1                                        1.3.12         2023-01-22 [2] CRAN (R 4.4.0)
##   runibic                                         1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RUnit                                           0.4.32         2018-05-18 [2] CRAN (R 4.4.0)
##   runonce                                         0.2.3          2021-10-02 [2] CRAN (R 4.4.0)
##   ruv                                             0.9.7.1        2019-08-30 [2] CRAN (R 4.4.0)
##   RUVcorr                                         1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RUVnormalize                                    1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RUVnormalizeData                                1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   RUVSeq                                          1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rvcheck                                         0.2.1          2021-10-22 [2] CRAN (R 4.4.0)
##   rversions                                       2.1.2          2022-08-31 [2] CRAN (R 4.4.0)
##   rvest                                           1.0.3          2022-08-19 [2] CRAN (R 4.4.0)
##   rvinecopulib                                    0.6.3.1.1      2023-02-23 [2] CRAN (R 4.4.0)
##   Rvisdiff                                        1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RVS                                             1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   RWeka                                           0.4-46         2023-03-07 [2] CRAN (R 4.4.0)
##   RWekajars                                       3.9.3-2        2019-10-19 [2] CRAN (R 4.4.0)
##   rWikiPathways                                   1.23.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   rworkflows                                      1.0.1          2024-01-18 [2] CRAN (R 4.4.0)
##   s2                                              1.1.6          2023-12-19 [2] CRAN (R 4.4.0)
##   S4Arrays                                        1.3.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   s4vd                                            1.1-1          2015-11-19 [2] CRAN (R 4.4.0)
##   S4Vectors                                       0.41.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sabre                                           0.4.3          2022-08-17 [2] CRAN (R 4.4.0)
##   safe                                            3.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   safetensors                                     0.1.2          2023-09-12 [2] CRAN (R 4.4.0)
##   sagenhaft                                       1.73.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SAIGEgds                                        2.3.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sampleClassifier                                1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sampleClassifierData                            1.27.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   sampling                                        2.10           2023-10-29 [2] CRAN (R 4.4.0)
##   samr                                            3.0            2018-10-16 [2] CRAN (R 4.4.0)
##   SamSPECTRAL                                     1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sandwich                                        3.1-0          2023-12-11 [2] CRAN (R 4.4.0)
##   sangeranalyseR                                  1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sangerseqR                                      1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SANTA                                           2.39.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SARC                                            1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sarks                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   saseR                                           0.99.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sass                                            0.4.8          2023-12-06 [2] CRAN (R 4.4.0)
##   satuRn                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SAVER                                           1.1.2          2019-11-13 [2] CRAN (R 4.4.0)
##   SBGNview                                        1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SBGNview.data                                   1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SBMLR                                           1.99.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SC3                                             1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Scale4C                                         1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ScaledMatrix                                    1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scales                                          1.3.0          2023-11-28 [2] CRAN (R 4.4.0)
##   scam                                            1.2-15         2024-01-25 [2] CRAN (R 4.4.0)
##   SCAN.UPC                                        2.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scAnnotatR                                      1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scAnnotatR.models                               0.99.10        2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   SCANVIS                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SCArray                                         1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SCArray.sat                                     1.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scATAC.Explorer                                 1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   scater                                          1.31.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scatterHatch                                    1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scattermore                                     1.2            2023-06-12 [2] CRAN (R 4.4.0)
##   scatterpie                                      0.2.1          2023-06-07 [2] CRAN (R 4.4.0)
##   scatterplot3d                                   0.3-44         2023-05-05 [2] CRAN (R 4.4.0)
##   scBFA                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SCBN                                            1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scBubbletree                                    1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scCB2                                           1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scClassify                                      1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sccomp                                          1.7.5          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sccore                                          1.0.4          2023-07-12 [2] CRAN (R 4.4.0)
##   scDataviz                                       1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scDblFinder                                     1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scDD                                            1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scDDboost                                       1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scde                                            2.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scDesign3                                       1.1.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scds                                            1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SCFA                                            1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scFeatureFilter                                 1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scFeatures                                      1.3.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scGPS                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   schex                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scHOT                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scico                                           1.5.0          2023-08-14 [2] CRAN (R 4.4.0)
##   scider                                          1.1.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scifer                                          1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SCLCBam                                         1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   scmap                                           1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scMerge                                         1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scMET                                           1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scmeth                                          1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scMultiome                                      1.3.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SCnorm                                          1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scone                                           1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Sconify                                         1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SCOPE                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scoreInvHap                                     1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scp                                             1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scPCA                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scpdata                                         1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   scPipe                                          2.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scran                                           1.31.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scReClassify                                    1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scRecover                                       1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   screenCounter                                   1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ScreenR                                         1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scRepertoire                                    1.99.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scrime                                          1.3.5          2018-12-01 [2] CRAN (R 4.4.0)
##   scRNAseq                                        2.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   scRNAseqApp                                     1.3.8          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scruff                                          1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scry                                            1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scrypt                                          0.1.6          2023-01-29 [2] CRAN (R 4.4.0)
##   scs                                             3.2.4          2023-04-11 [2] CRAN (R 4.4.0)
##   scShapes                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scTensor                                        2.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scTGIF                                          1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scTHI                                           1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scTHI.data                                      1.15.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   sctransform                                     0.4.1          2023-10-19 [2] CRAN (R 4.4.0)
##   scTreeViz                                       1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scuttle                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   scviR                                           1.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sda                                             1.3.8          2021-11-21 [2] CRAN (R 4.4.0)
##   SDAMS                                           1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sechm                                           1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seewave                                         2.2.3          2023-10-19 [2] CRAN (R 4.4.0)
##   segmented                                       2.0-2          2024-01-23 [2] CRAN (R 4.4.0)
##   segmenter                                       1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   selectKSigs                                     1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   selectr                                         0.4-2          2019-11-20 [2] CRAN (R 4.4.0)
##   SELEX                                           1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SemDist                                         1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   semisup                                         1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sendmailR                                       1.4-0          2023-01-12 [2] CRAN (R 4.4.0)
##   seq.hotSPOT                                     1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seq2pathway                                     1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seq2pathway.data                                1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SeqArray                                        1.43.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seqc                                            1.37.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   seqCAT                                          1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seqcombo                                        1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SeqGate                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SeqGSEA                                         1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seqinr                                          4.2-36         2023-12-08 [2] CRAN (R 4.4.0)
##   seqLogo                                         1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seqmagick                                       0.1.7          2024-01-09 [2] CRAN (R 4.4.0)
##   seqminer                                        9.3            2023-11-28 [2] CRAN (R 4.4.0)
##   seqpac                                          1.3.0          2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   seqPattern                                      1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seqsetvis                                       1.23.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seqTools                                        1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sequencing                                      1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   SeqVarTools                                     1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seriation                                       1.5.4          2023-12-12 [2] CRAN (R 4.4.0)
##   serumStimulation                                1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   servr                                           0.28           2023-12-19 [2] CRAN (R 4.4.0)
##   sesame                                          1.21.7         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sesameData                                      1.21.9         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   sessioninfo                                     1.2.2          2021-12-06 [2] CRAN (R 4.4.0)
##   SEtools                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   setRNG                                          2022.4-1       2022-04-03 [2] CRAN (R 4.4.0)
##   sets                                            1.0-25         2023-12-06 [2] CRAN (R 4.4.0)
##   settings                                        0.2.7          2021-05-07 [2] CRAN (R 4.4.0)
##   Seurat                                          5.0.1          2023-11-17 [2] CRAN (R 4.4.0)
##   SeuratObject                                    5.0.1          2023-11-17 [2] CRAN (R 4.4.0)
##   sevenbridges                                    1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sevenC                                          1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   seventyGeneData                                 1.39.4         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   sf                                              1.0-15         2023-12-18 [2] CRAN (R 4.4.0)
##   sfarrow                                         0.4.1          2021-10-27 [2] CRAN (R 4.4.0)
##   SFEData                                         1.5.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   sfsmisc                                         1.1-16         2023-08-10 [2] CRAN (R 4.4.0)
##   sftime                                          0.2-0          2022-03-17 [2] CRAN (R 4.4.0)
##   SGCP                                            1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sgeostat                                        1.0-27         2016-02-03 [2] CRAN (R 4.4.0)
##   SGSeq                                           1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   shades                                          1.4.0          2019-08-02 [2] CRAN (R 4.4.0)
##   shadowtext                                      0.1.3          2024-01-19 [2] CRAN (R 4.4.0)
##   shape                                           1.4.6          2021-05-19 [2] CRAN (R 4.4.0)
##   SharedObject                                    1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   shiny                                           1.8.0          2023-11-17 [2] CRAN (R 4.4.0)
##   shiny.gosling                                   0.99.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   shiny.react                                     0.3.0          2022-12-25 [2] CRAN (R 4.4.0)
##   shinyAce                                        0.4.2          2022-05-06 [2] CRAN (R 4.4.0)
##   shinyalert                                      3.0.0          2021-12-20 [2] CRAN (R 4.4.0)
##   shinyBS                                         0.61.1         2022-04-17 [2] CRAN (R 4.4.0)
##   shinybusy                                       0.3.2          2023-11-23 [2] CRAN (R 4.4.0)
##   shinycssloaders                                 1.0.0          2020-07-28 [2] CRAN (R 4.4.0)
##   shinycustomloader                               0.9.0          2018-03-27 [2] CRAN (R 4.4.0)
##   shinyCyJS                                       1.0.0          2023-09-26 [2] CRAN (R 4.4.0)
##   shinydashboard                                  0.7.2          2021-09-30 [2] CRAN (R 4.4.0)
##   shinydashboardPlus                              2.0.3          2021-09-15 [2] CRAN (R 4.4.0)
##   shinyepico                                      1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   shinyFeedback                                   0.4.0          2021-09-23 [2] CRAN (R 4.4.0)
##   shinyFiles                                      0.9.3          2022-08-19 [2] CRAN (R 4.4.0)
##   shinyHeatmaply                                  0.2.0          2020-04-06 [2] CRAN (R 4.4.0)
##   shinyhelper                                     0.3.2          2019-11-09 [2] CRAN (R 4.4.0)
##   shinyjqui                                       0.4.1          2022-02-03 [2] CRAN (R 4.4.0)
##   shinyjs                                         2.1.0          2021-12-23 [2] CRAN (R 4.4.0)
##   shinylogs                                       0.2.1          2022-04-18 [2] CRAN (R 4.4.0)
##   shinymanager                                    1.0.410        2022-09-27 [2] CRAN (R 4.4.0)
##   shinyMatrix                                     0.6.0          2021-05-20 [2] CRAN (R 4.4.0)
##   shinymeta                                       0.2.0.3        2021-11-17 [2] CRAN (R 4.4.0)
##   shinyMethyl                                     1.39.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   shinyMethylData                                 1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   shinypanel                                      0.1.5          2022-03-25 [2] CRAN (R 4.4.0)
##   shinyscreenshot                                 0.2.1          2023-08-21 [2] CRAN (R 4.4.0)
##   shinytest                                       1.5.3          2023-03-25 [2] CRAN (R 4.4.0)
##   shinytest2                                      0.3.1          2023-08-26 [2] CRAN (R 4.4.0)
##   shinythemes                                     1.2.0          2021-01-25 [2] CRAN (R 4.4.0)
##   shinytitle                                      0.1.0          2021-06-16 [2] CRAN (R 4.4.0)
##   shinytoastr                                     2.2.0          2023-08-30 [2] CRAN (R 4.4.0)
##   shinyTree                                       0.3.1          2023-08-07 [2] CRAN (R 4.4.0)
##   shinyvalidate                                   0.1.3          2023-10-04 [2] CRAN (R 4.4.0)
##   shinyWidgets                                    0.8.1          2024-01-10 [2] CRAN (R 4.4.0)
##   ShortRead                                       1.61.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   showimage                                       1.0.0          2018-01-24 [2] CRAN (R 4.4.0)
##   showtext                                        0.9-6          2023-05-03 [2] CRAN (R 4.4.0)
##   showtextdb                                      3.0            2020-06-04 [2] CRAN (R 4.4.0)
##   SIAMCAT                                         2.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SICtools                                        1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SIFT.Hsapiens.dbSNP132                          1.0.2          2024-01-16 [2] Bioconductor
##   SIFT.Hsapiens.dbSNP137                          1.0.0          2024-01-16 [2] Bioconductor
##   SigCheck                                        2.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sigclust                                        1.1.0.1        2022-06-27 [2] CRAN (R 4.4.0)
##   sigFeature                                      1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SigFuge                                         1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   siggenes                                        1.77.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sights                                          1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sigmajs                                         0.1.5          2020-06-18 [2] CRAN (R 4.4.0)
##   Signac                                          1.12.0         2023-11-08 [2] CRAN (R 4.4.0)
##   signal                                          1.8-0          2023-11-27 [2] CRAN (R 4.4.0)
##   signalHsmm                                      1.5            2018-11-15 [2] CRAN (R 4.4.0)
##   signatureSearch                                 1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   signatureSearchData                             1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   signeR                                          2.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   signifinder                                     1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sigora                                          3.1.1          2021-11-30 [2] CRAN (R 4.4.0)
##   SigsPack                                        1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sigsquared                                      1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SIM                                             1.73.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SIMAT                                           1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SimBenchData                                    1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SimBu                                           1.5.4          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SIMD                                            1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SimFFPE                                         1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   similaRpeak                                     1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SIMLR                                           1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   simona                                          1.1.8          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   simpIntLists                                    1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   simpleCache                                     0.4.2          2021-04-17 [2] CRAN (R 4.4.0)
##   simpleSeg                                       1.5.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   simpleSingleCell                                1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   simplifyEnrichment                              1.13.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sincell                                         1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   single                                          1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Single.mTEC.Transcriptomes                      1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SingleCellExperiment                            1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SingleCellMultiModal                            1.15.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SingleCellSignalR                               1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   singleCellTK                                    2.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SingleMoleculeFootprinting                      1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SingleMoleculeFootprintingData                  1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SingleR                                         2.5.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SingleRBook                                     1.13.2         2024-01-29 [2] Bioconductor 3.19 (R 4.4.0)
##   singscore                                       1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SingscoreAMLMutations                           1.19.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   SiPSiC                                          1.3.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sitadela                                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sitePath                                        1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sitmo                                           2.0.2          2021-10-13 [2] CRAN (R 4.4.0)
##   sizepower                                       1.73.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sjlabelled                                      1.2.0          2022-04-10 [2] CRAN (R 4.4.0)
##   sjmisc                                          2.8.9          2021-12-03 [2] CRAN (R 4.4.0)
##   skewr                                           1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   skmeans                                         0.2-16         2023-09-23 [2] CRAN (R 4.4.0)
##   slalom                                          1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   slam                                            0.1-50         2022-01-08 [2] CRAN (R 4.4.0)
##   slickR                                          0.6.0          2022-12-21 [2] CRAN (R 4.4.0)
##   slider                                          0.3.1          2023-10-12 [2] CRAN (R 4.4.0)
##   slingshot                                       2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SLqPCR                                          1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sm                                              2.2-5.7.1      2022-07-04 [2] CRAN (R 4.4.0)
##   SMAD                                            1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SMAP                                            1.67.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SmartSVA                                        0.1.3          2017-05-28 [2] CRAN (R 4.4.0)
##   smatr                                           3.4-8          2018-03-18 [2] CRAN (R 4.4.0)
##   SMITE                                           1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   smokingMouse                                    1.1.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   smoof                                           1.6.0.3        2023-03-10 [2] CRAN (R 4.4.0)
##   smoother                                        1.1            2015-04-16 [2] CRAN (R 4.4.0)
##   smoothie                                        1.0-3          2021-05-31 [2] CRAN (R 4.4.0)
##   SmoothWin                                       3.0.0          2019-07-27 [2] CRAN (R 4.4.0)
##   smurf                                           1.1.5          2023-03-22 [2] CRAN (R 4.4.0)
##   SMVar                                           1.3.4          2022-04-12 [2] CRAN (R 4.4.0)
##   sn                                              2.1.1          2023-04-04 [2] CRAN (R 4.4.0)
##   sna                                             2.7-2          2023-12-06 [2] CRAN (R 4.4.0)
##   SNAData                                         1.49.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SNAGEE                                          1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SNAGEEdata                                      1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   snakecase                                       0.11.1         2023-08-27 [2] CRAN (R 4.4.0)
##   snapcount                                       1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SNFtool                                         2.3.1          2021-06-11 [2] CRAN (R 4.4.0)
##   snifter                                         1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   snm                                             1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   snow                                            0.4-4          2021-10-27 [2] CRAN (R 4.4.0)
##   SnowballC                                       0.7.1          2023-04-25 [2] CRAN (R 4.4.0)
##   snowfall                                        1.84-6.3       2023-11-26 [2] CRAN (R 4.4.0)
##   SNPediaR                                        1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SNPhood                                         1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SNPhoodData                                     1.33.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SNPlocs.Hsapiens.dbSNP144.GRCh37                0.99.20        2024-01-16 [2] Bioconductor
##   SNPlocs.Hsapiens.dbSNP144.GRCh38                0.99.20        2024-01-16 [2] Bioconductor
##   SNPlocs.Hsapiens.dbSNP155.GRCh37                0.99.24        2024-01-16 [2] Bioconductor
##   SNPlocs.Hsapiens.dbSNP155.GRCh38                0.99.24        2024-01-16 [2] Bioconductor
##   SNPRelate                                       1.37.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   snpStats                                        1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   softImpute                                      1.4-1          2021-05-09 [2] CRAN (R 4.4.0)
##   soGGi                                           1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   solrium                                         1.2.0          2021-05-19 [2] CRAN (R 4.4.0)
##   som                                             0.3-5.1        2016-07-06 [2] CRAN (R 4.4.0)
##   SomaDataIO                                      6.0.0          2023-03-15 [2] CRAN (R 4.4.0)
##   SomaScan.db                                     0.99.8         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   SomatiCAData                                    1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SomaticCancerAlterations                        1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SomaticSignatures                               2.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SOMbrero                                        1.4-2          2024-01-25 [2] CRAN (R 4.4.0)
##   SOMNiBUS                                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sonicLength                                     1.4.7          2021-09-20 [2] CRAN (R 4.4.0)
##   sortable                                        0.5.0          2023-03-26 [2] CRAN (R 4.4.0)
##   SoupX                                           1.6.2          2022-11-01 [2] CRAN (R 4.4.0)
##   sourcetools                                     0.1.7-1        2023-02-01 [2] CRAN (R 4.4.0)
##   sp                                              2.1-2          2023-11-26 [2] CRAN (R 4.4.0)
##   SpacePAC                                        1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spacetime                                       1.3-1          2023-12-05 [2] CRAN (R 4.4.0)
##   spam                                            2.10-0         2023-10-23 [2] CRAN (R 4.4.0)
##   Spaniel                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sparkline                                       2.0            2016-11-12 [2] CRAN (R 4.4.0)
##   sparklyr                                        1.8.4          2023-10-30 [2] CRAN (R 4.4.0)
##   sparrow                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SparseArray                                     1.3.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SparseDC                                        0.1.17         2018-01-04 [2] CRAN (R 4.4.0)
##   sparseDOSSA                                     1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sparseLDA                                       0.1-9          2016-09-22 [2] CRAN (R 4.4.0)
##   SparseM                                         1.81           2021-02-18 [2] CRAN (R 4.4.0)
##   sparseMatrixStats                               1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sparseMVN                                       0.2.2          2021-10-25 [2] CRAN (R 4.4.0)
##   sparsenetgls                                    1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sparsepca                                       0.1.2          2018-04-11 [2] CRAN (R 4.4.0)
##   SparseSignatures                                2.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spaSim                                          1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SPAtest                                         3.1.2          2020-09-04 [2] CRAN (R 4.4.0)
##   spatial                                         7.3-17         2023-07-20 [3] CRAN (R 4.4.0)
##   SpatialCPie                                     1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SpatialDatasets                                 1.1.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   spatialDE                                       1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SpatialDecon                                    1.13.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spatialDmelxsim                                 1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SpatialExperiment                               1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SpatialExtremes                                 2.1-0          2022-04-19 [2] CRAN (R 4.4.0)
##   SpatialFeatureExperiment                        1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spatialHeatmap                                  2.9.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spatialLIBD                                     1.15.1         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SpatialOmicsOverlay                             1.3.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SpatialTools                                    1.0.5          2023-07-18 [2] CRAN (R 4.4.0)
##   spatstat                                        3.0-7          2023-10-30 [2] CRAN (R 4.4.0)
##   spatstat.data                                   3.0-4          2024-01-15 [2] CRAN (R 4.4.0)
##   spatstat.explore                                3.2-5          2023-10-22 [2] CRAN (R 4.4.0)
##   spatstat.geom                                   3.2-8          2024-01-26 [2] CRAN (R 4.4.0)
##   spatstat.linnet                                 3.1-3          2023-10-28 [2] CRAN (R 4.4.0)
##   spatstat.model                                  3.2-8          2023-10-23 [2] CRAN (R 4.4.0)
##   spatstat.random                                 3.2-2          2023-11-29 [2] CRAN (R 4.4.0)
##   spatstat.sparse                                 3.0-3          2023-10-24 [2] CRAN (R 4.4.0)
##   spatstat.utils                                  3.0-4          2023-10-24 [2] CRAN (R 4.4.0)
##   spatzie                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spBayes                                         0.4-7          2023-12-11 [2] CRAN (R 4.4.0)
##   spData                                          2.3.0          2023-07-06 [2] CRAN (R 4.4.0)
##   spdep                                           1.3-1          2023-11-23 [2] CRAN (R 4.4.0)
##   spdl                                            0.0.5          2023-06-18 [2] CRAN (R 4.4.0)
##   speaq                                           2.7.0          2022-05-23 [2] CRAN (R 4.4.0)
##   speckle                                         1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   specL                                           1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SpeCond                                         1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Spectra                                         1.13.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SpectralTAD                                     1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   speedglm                                        0.3-5          2023-05-06 [2] CRAN (R 4.4.0)
##   spelling                                        2.2.1          2023-03-22 [2] CRAN (R 4.4.0)
##   SPEM                                            1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SPIA                                            2.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SPIAT                                           1.5.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spicyR                                          1.15.4         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spicyWorkflow                                   1.3.1          2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   SpidermiR                                       1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SpikeIn                                         1.45.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SpikeInSubset                                   1.43.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   spikeLI                                         2.63.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spiky                                           1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spillR                                          0.99.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spkTools                                        1.59.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   splancs                                         2.01-44        2023-08-21 [2] CRAN (R 4.4.0)
##   splatter                                        1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SpliceWiz                                       1.5.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SplicingFactory                                 1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SplicingGraphs                                  1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   splines                                         4.4.0          2024-01-16 [3] local
##   splineTimeR                                     1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SPLINTER                                        1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   splitstackshape                                 1.4.8          2019-04-21 [2] CRAN (R 4.4.0)
##   splots                                          1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   splus2R                                         1.3-4          2023-12-06 [2] CRAN (R 4.4.0)
##   SPONGE                                          1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SpotClean                                       1.5.2          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SPOTlight                                       1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spqn                                            1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spqnData                                        1.15.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   spsComps                                        0.3.3.0        2023-07-12 [2] CRAN (R 4.4.0)
##   SPsimSeq                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   spsUtil                                         0.2.2          2021-10-30 [2] CRAN (R 4.4.0)
##   SQLDataFrame                                    1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sqldf                                           0.4-11         2017-06-28 [2] CRAN (R 4.4.0)
##   SQN                                             1.0.6          2022-06-10 [2] CRAN (R 4.4.0)
##   SQUADD                                          1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SQUAREM                                         2021.1         2021-01-13 [2] CRAN (R 4.4.0)
##   squash                                          1.0.9          2020-02-20 [2] CRAN (R 4.4.0)
##   sRACIPE                                         1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SRAdb                                           1.65.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   srnadiff                                        1.23.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ssc                                             2.1-0          2019-12-15 [2] CRAN (R 4.4.0)
##   sscu                                            2.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sSeq                                            1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ssize                                           1.77.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sSNAPPY                                         1.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ssPATHS                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ssrch                                           1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ssviz                                           1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   st                                              1.2.7          2021-11-27 [2] CRAN (R 4.4.0)
##   stable                                          1.1.6          2022-03-02 [2] CRAN (R 4.4.0)
##   stabledist                                      0.7-1          2016-09-12 [2] CRAN (R 4.4.0)
##   stabs                                           0.6-4          2021-01-29 [2] CRAN (R 4.4.0)
##   stageR                                          1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   standR                                          1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   StanHeaders                                     2.32.5         2024-01-10 [2] CRAN (R 4.4.0)
##   staRank                                         1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   StarBioTrek                                     1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   stars                                           0.6-4          2023-09-11 [2] CRAN (R 4.4.0)
##   startupmsg                                      0.9.6          2019-03-11 [2] CRAN (R 4.4.0)
##   statebins                                       1.4.0          2020-07-08 [2] CRAN (R 4.4.0)
##   STATegRa                                        1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Statial                                         1.5.5          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   statip                                          0.2.3          2019-11-17 [2] CRAN (R 4.4.0)
##   statmod                                         1.5.0          2023-01-06 [2] CRAN (R 4.4.0)
##   statnet.common                                  4.9.0          2023-05-24 [2] CRAN (R 4.4.0)
##   stats                                         * 4.4.0          2024-01-16 [3] local
##   stats4                                          4.4.0          2024-01-16 [3] local
##   statTarget                                      1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   STdeconvolve                                    1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SteinerNet                                      3.1.0          2020-09-07 [2] CRAN (R 4.4.0)
##   stemHypoxia                                     1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   stepNorm                                        1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   STexampleData                                   1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   stJoincount                                     1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   stopwords                                       2.3            2021-10-28 [2] CRAN (R 4.4.0)
##   storr                                           1.2.5          2020-12-01 [2] CRAN (R 4.4.0)
##   strandCheckR                                    1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   strawr                                          0.0.91         2023-03-29 [2] CRAN (R 4.4.0)
##   Streamer                                        1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   strex                                           1.6.1          2023-10-30 [2] CRAN (R 4.4.0)
##   STRINGdb                                        2.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   stringdist                                      0.9.12         2023-11-28 [2] CRAN (R 4.4.0)
##   stringfish                                      0.16.0         2023-11-28 [2] CRAN (R 4.4.0)
##   stringi                                         1.8.3          2023-12-11 [2] CRAN (R 4.4.0)
##   stringr                                         1.5.1          2023-11-14 [2] CRAN (R 4.4.0)
##   STROMA4                                         1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   strucchange                                     1.5-3          2022-06-15 [2] CRAN (R 4.4.0)
##   struct                                          1.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Structstrings                                   1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   structToolbox                                   1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   StructuralVariantAnnotation                     1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   styler                                          1.10.2         2023-08-29 [2] CRAN (R 4.4.0)
##   SubCellBarCode                                  1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   subplex                                         1.8            2022-04-12 [2] CRAN (R 4.4.0)
##   subSeq                                          1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   subspace                                        1.0.4          2015-10-12 [2] CRAN (R 4.4.0)
##   SUITOR                                          1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SummarizedBenchmark                             2.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SummarizedExperiment                            1.33.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   summarytools                                    1.0.1          2022-05-20 [2] CRAN (R 4.4.0)
##   Summix                                          2.9.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   superheat                                       0.1.0          2017-02-04 [2] CRAN (R 4.4.0)
##   SuperLearner                                    2.0-28.1       2023-07-18 [2] CRAN (R 4.4.0)
##   supersigs                                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SuppDists                                       1.1-9.7        2022-01-03 [2] CRAN (R 4.4.0)
##   supraHex                                        1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   surfaltr                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   survcomp                                        1.53.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   survey                                          4.2-1          2023-05-03 [2] CRAN (R 4.4.0)
##   survival                                        3.5-7          2023-08-14 [3] CRAN (R 4.4.0)
##   survivalAnalysis                                0.3.0          2022-02-11 [2] CRAN (R 4.4.0)
##   survivalROC                                     1.0.3.1        2022-12-05 [2] CRAN (R 4.4.0)
##   survivalsvm                                     0.0.5          2018-02-05 [2] CRAN (R 4.4.0)
##   survminer                                       0.4.9          2021-03-09 [2] CRAN (R 4.4.0)
##   survMisc                                        0.5.6          2022-04-07 [2] CRAN (R 4.4.0)
##   survtype                                        1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sva                                             3.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   svaNUMT                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   svaRetro                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   svd                                             0.5.5          2023-11-28 [2] CRAN (R 4.4.0)
##   svglite                                         2.1.3          2023-12-08 [2] CRAN (R 4.4.0)
##   svgPanZoom                                      0.3.4          2020-02-15 [2] CRAN (R 4.4.0)
##   SVM2CRMdata                                     1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   SVMDO                                           1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   svMisc                                          1.2.3          2021-10-11 [2] CRAN (R 4.4.0)
##   svUnit                                          1.0.6          2021-04-19 [2] CRAN (R 4.4.0)
##   swamp                                           1.5.1          2019-12-06 [2] CRAN (R 4.4.0)
##   SWATH2stats                                     1.33.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SwathXtend                                      2.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   swfdr                                           1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   switchBox                                       1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   switchde                                        1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sylly                                           0.1-6          2020-09-20 [2] CRAN (R 4.4.0)
##   sylly.en                                        0.1-3          2018-03-19 [2] CRAN (R 4.4.0)
##   synapsis                                        1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   synapter                                        2.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   synapterdata                                    1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   synaptome.data                                  0.99.6         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   synaptome.db                                    0.99.16        2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   synergyfinder                                   3.11.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SynExtend                                       1.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   synlet                                          2.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   SynMut                                          1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   syntenet                                        1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   sys                                             3.4.2          2023-05-23 [2] CRAN (R 4.4.0)
##   sysfonts                                        0.8.8          2022-03-13 [2] CRAN (R 4.4.0)
##   systemfonts                                     1.0.5          2023-10-09 [2] CRAN (R 4.4.0)
##   systemPipeR                                     2.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   systemPipeRdata                                 2.7.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   systemPipeShiny                                 1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   systemPipeTools                                 1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   syuzhet                                         1.0.7          2023-08-11 [2] CRAN (R 4.4.0)
##   TabulaMurisData                                 1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TabulaMurisSenisData                            1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   tadar                                           1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TADCompare                                      1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tagcloud                                        0.6            2015-07-03 [2] CRAN (R 4.4.0)
##   tanggle                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TAPseq                                          1.15.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   target                                          1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TargetDecoy                                     1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   targetscan.Hs.eg.db                             0.6.1          2024-01-16 [2] Bioconductor
##   TargetScore                                     1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TargetScoreData                                 1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TargetSearch                                    2.5.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TargetSearchData                                1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   tartare                                         1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   taxize                                          0.9.100        2022-04-22 [2] CRAN (R 4.4.0)
##   TBSignatureProfiler                             1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TBX20BamSubset                                  1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TCA                                             1.2.1          2021-02-14 [2] CRAN (R 4.4.0)
##   TCC                                             1.43.4         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TCGAbiolinks                                    2.31.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TCGAbiolinksGUI.data                            1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TCGAcrcmiRNA                                    1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TCGAcrcmRNA                                     1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TCGAMethylation450k                             1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TCGAutils                                       1.23.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TCGAWorkflow                                    1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   TCGAWorkflowData                                1.27.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   tcltk                                           4.4.0          2024-01-16 [3] local
##   tcltk2                                          1.2-11         2014-12-20 [2] CRAN (R 4.4.0)
##   TCseq                                           1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TDbasedUFE                                      1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TDbasedUFEadv                                   1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TeachingDemos                                   2.12           2020-04-07 [2] CRAN (R 4.4.0)
##   TEKRABber                                       1.7.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tensor                                          1.5            2012-05-05 [2] CRAN (R 4.4.0)
##   tensorA                                         0.36.2.1       2023-12-13 [2] CRAN (R 4.4.0)
##   tensorflow                                      2.14.0         2023-09-28 [2] CRAN (R 4.4.0)
##   TENxBrainData                                   1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TENxBUSData                                     1.17.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TENxIO                                          1.5.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TENxPBMCData                                    1.21.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   tenXplore                                       1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TENxVisiumData                                  1.11.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TEQC                                            4.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ternarynet                                      1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   terra                                           1.7-65         2023-12-15 [2] CRAN (R 4.4.0)
##   terraTCGAdata                                   1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tester                                          0.1.7          2013-11-14 [2] CRAN (R 4.4.0)
##   testthat                                        3.2.1          2023-12-02 [2] CRAN (R 4.4.0)
##   text2vec                                        0.6.4          2023-11-09 [2] CRAN (R 4.4.0)
##   textclean                                       0.9.3          2018-07-23 [2] CRAN (R 4.4.0)
##   textshape                                       1.7.3          2021-05-28 [2] CRAN (R 4.4.0)
##   textshaping                                     0.3.7          2023-10-09 [2] CRAN (R 4.4.0)
##   textstem                                        0.1.4          2018-04-09 [2] CRAN (R 4.4.0)
##   TFARM                                           1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tfautograph                                     0.3.2          2021-09-17 [2] CRAN (R 4.4.0)
##   TFBSTools                                       1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TFEA.ChIP                                       1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TFHAZ                                           1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TFisher                                         0.2.0          2018-03-21 [2] CRAN (R 4.4.0)
##   TFMPvalue                                       0.0.9          2022-10-21 [2] CRAN (R 4.4.0)
##   tfprobability                                   0.15.1         2022-09-01 [2] CRAN (R 4.4.0)
##   tfruns                                          1.5.2          2024-01-26 [2] CRAN (R 4.4.0)
##   TFutils                                         1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TH.data                                         1.1-2          2023-04-17 [2] CRAN (R 4.4.0)
##   threejs                                         0.3.3          2020-01-21 [2] CRAN (R 4.4.0)
##   tibble                                          3.2.1          2023-03-20 [2] CRAN (R 4.4.0)
##   tictoc                                          1.2            2023-04-23 [2] CRAN (R 4.4.0)
##   tidybayes                                       3.0.6          2023-08-12 [2] CRAN (R 4.4.0)
##   tidybulk                                        1.15.4         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tidyCoverage                                    0.99.4         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tidydr                                          0.0.5          2023-03-08 [2] CRAN (R 4.4.0)
##   tidygraph                                       1.3.0          2023-12-18 [2] CRAN (R 4.4.0)
##   tidyHeatmap                                     1.8.1          2022-05-20 [2] CRAN (R 4.4.0)
##   tidyr                                           1.3.1          2024-01-24 [2] CRAN (R 4.4.0)
##   tidyselect                                      1.2.0          2022-10-10 [2] CRAN (R 4.4.0)
##   tidyseurat                                      0.8.0          2024-01-10 [2] CRAN (R 4.4.0)
##   tidySingleCellExperiment                        1.13.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tidySpatialExperiment                           0.99.19        2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tidySummarizedExperiment                        1.13.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tidytext                                        0.4.1          2023-01-07 [2] CRAN (R 4.4.0)
##   tidytidbits                                     0.3.2          2022-03-16 [2] CRAN (R 4.4.0)
##   tidytree                                        0.4.6          2023-12-12 [2] CRAN (R 4.4.0)
##   tidyverse                                       2.0.0          2023-02-22 [2] CRAN (R 4.4.0)
##   tiff                                            0.1-12         2023-11-28 [2] CRAN (R 4.4.0)
##   tightClust                                      1.1            2018-06-12 [2] CRAN (R 4.4.0)
##   tigre                                           1.57.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tiledb                                          0.23.0         2023-12-21 [2] CRAN (R 4.4.0)
##   TileDBArray                                     1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tilingArray                                     1.81.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   timechange                                      0.3.0          2024-01-18 [2] CRAN (R 4.4.0)
##   timecourse                                      1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   timecoursedata                                  1.13.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   timeDate                                        4032.109       2023-12-14 [2] CRAN (R 4.4.0)
##   timeOmics                                       1.15.4         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TimerQuant                                      1.33.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   timescape                                       1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   timeSeries                                      4032.109       2024-01-14 [2] CRAN (R 4.4.0)
##   TimiRGeN                                        1.13.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   timsac                                          1.3.8-4        2023-09-30 [2] CRAN (R 4.4.0)
##   TIN                                             1.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tinesath1cdf                                    1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   tinesath1probe                                  1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   tinytest                                        1.4.1          2023-02-22 [2] CRAN (R 4.4.0)
##   tinytex                                         0.49           2023-11-22 [2] CRAN (R 4.4.0)
##   tippy                                           0.1.0          2021-01-11 [2] CRAN (R 4.4.0)
##   TissueEnrich                                    1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tissueTreg                                      1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TitanCNA                                        1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tkrplot                                         0.0-27         2022-10-18 [2] CRAN (R 4.4.0)
##   tkWidgets                                       1.81.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tLOH                                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tm                                              0.7-11         2023-02-05 [2] CRAN (R 4.4.0)
##   TMB                                             1.9.10         2023-12-12 [2] CRAN (R 4.4.0)
##   TMExplorer                                      1.13.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TMixClust                                       1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tmvtnorm                                        1.6            2023-12-05 [2] CRAN (R 4.4.0)
##   TNBC.CMS                                        1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tnet                                            3.0.16         2020-02-24 [2] CRAN (R 4.4.0)
##   TnT                                             1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TOAST                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tofsimsData                                     1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   tokenizers                                      0.3.0          2022-12-22 [2] CRAN (R 4.4.0)
##   tomoda                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tomoseqr                                        1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tools                                           4.4.0          2024-01-16 [3] local
##   TOP                                             1.3.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   topconfects                                     1.19.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TopDom                                          0.10.1         2021-05-06 [2] CRAN (R 4.4.0)
##   topdownr                                        1.25.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   topdownrdata                                    1.25.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   topGO                                           2.55.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   topicmodels                                     0.2-16         2024-01-09 [2] CRAN (R 4.4.0)
##   topologyGSA                                     1.5.0          2023-09-25 [2] CRAN (R 4.4.0)
##   torch                                           0.12.0         2023-12-15 [2] CRAN (R 4.4.0)
##   ToxicoGx                                        2.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TPP                                             3.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TPP2D                                           1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tracktables                                     1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   trackViewer                                     1.39.5         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tractor.base                                    3.3.5.1        2022-08-24 [2] CRAN (R 4.4.0)
##   tradeSeq                                        1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TrajectoryGeometry                              1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TrajectoryUtils                                 1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   transcriptogramer                               1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   transcriptR                                     1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   transformGamPoi                                 1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tRanslatome                                     1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   transomics2cytoscape                            1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   transport                                       0.14-6         2023-07-02 [2] CRAN (R 4.4.0)
##   TransView                                       1.47.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   traseR                                          1.33.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   traviz                                          1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TreeAndLeaf                                     1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   treeio                                          1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   treekoR                                         1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   treemap                                         2.4-4          2023-05-25 [2] CRAN (R 4.4.0)
##   TreeSummarizedExperiment                        2.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TreeTools                                       1.10.0         2023-08-19 [2] CRAN (R 4.4.0)
##   TREG                                            1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Trendy                                          1.25.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TRESS                                           1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tricycle                                        1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   triebeard                                       0.4.1          2023-03-04 [2] CRAN (R 4.4.0)
##   trigger                                         1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   trio                                            3.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   triplex                                         1.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tripr                                           1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tRNA                                            1.21.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tRNAdbImport                                    1.21.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tRNAscanImport                                  1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TRONCO                                          2.35.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   truncdist                                       1.0-2          2016-08-30 [2] CRAN (R 4.4.0)
##   truncnorm                                       1.0-9          2023-03-20 [2] CRAN (R 4.4.0)
##   trust                                           0.1-8          2020-01-10 [2] CRAN (R 4.4.0)
##   TSAR                                            1.1.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TSCAN                                           1.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tseries                                         0.10-55        2023-12-06 [2] CRAN (R 4.4.0)
##   tsne                                            0.1-3.1        2022-03-28 [2] CRAN (R 4.4.0)
##   TSP                                             1.2-4          2023-04-04 [2] CRAN (R 4.4.0)
##   ttgsea                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TTMap                                           1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TTR                                             0.24.4         2023-11-28 [2] CRAN (R 4.4.0)
##   ttservice                                       0.4.0          2023-11-01 [2] CRAN (R 4.4.0)
##   tuberculosis                                    1.9.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TumourMethData                                  1.1.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   tuneR                                           1.4.6          2023-11-27 [2] CRAN (R 4.4.0)
##   TurboNorm                                       1.51.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TVTB                                            1.29.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tweeDEseq                                       1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tweeDEseqCountData                              1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   tweedie                                         2.3.5          2022-08-17 [2] CRAN (R 4.4.0)
##   tweenr                                          2.0.2          2022-09-06 [2] CRAN (R 4.4.0)
##   twilight                                        1.79.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   twoddpcr                                        1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   txcutr                                          1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   TxDb.Athaliana.BioMart.plantsmart22             3.0.1          2024-01-16 [2] Bioconductor
##   TxDb.Athaliana.BioMart.plantsmart28             3.2.2          2024-01-16 [2] Bioconductor
##   TxDb.Celegans.UCSC.ce11.ensGene                 3.15.0         2024-01-16 [2] Bioconductor
##   TxDb.Celegans.UCSC.ce11.refGene                 3.4.6          2024-01-16 [2] Bioconductor
##   TxDb.Celegans.UCSC.ce6.ensGene                  3.2.2          2024-01-16 [2] Bioconductor
##   TxDb.Dmelanogaster.UCSC.dm3.ensGene             3.2.2          2024-01-16 [2] Bioconductor
##   TxDb.Dmelanogaster.UCSC.dm6.ensGene             3.12.0         2024-01-16 [2] Bioconductor
##   TxDb.Drerio.UCSC.danRer10.refGene               3.4.6          2024-01-16 [2] Bioconductor
##   TxDb.Ggallus.UCSC.galGal5.refGene               3.12.0         2024-01-16 [2] Bioconductor
##   TxDb.Hsapiens.UCSC.hg18.knownGene               3.2.2          2024-01-16 [2] Bioconductor
##   TxDb.Hsapiens.UCSC.hg19.knownGene               3.2.2          2024-01-16 [2] Bioconductor
##   TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts     3.2.2          2024-01-16 [2] Bioconductor
##   TxDb.Hsapiens.UCSC.hg38.knownGene               3.18.0         2024-01-16 [2] Bioconductor
##   TxDb.Mmulatta.UCSC.rheMac10.refGene             3.14.0         2024-01-16 [2] Bioconductor
##   TxDb.Mmusculus.UCSC.mm10.ensGene                3.4.0          2024-01-16 [2] Bioconductor
##   TxDb.Mmusculus.UCSC.mm10.knownGene              3.10.0         2024-01-16 [2] Bioconductor
##   TxDb.Mmusculus.UCSC.mm39.refGene                3.18.0         2024-01-16 [2] Bioconductor
##   TxDb.Mmusculus.UCSC.mm9.knownGene               3.2.2          2024-01-16 [2] Bioconductor
##   TxDb.Rnorvegicus.UCSC.rn4.ensGene               3.2.2          2024-01-16 [2] Bioconductor
##   TxDb.Rnorvegicus.UCSC.rn5.refGene               3.12.0         2024-01-16 [2] Bioconductor
##   TxDb.Rnorvegicus.UCSC.rn6.refGene               3.4.6          2024-01-16 [2] Bioconductor
##   TxDb.Rnorvegicus.UCSC.rn7.refGene               3.15.0         2024-01-16 [2] Bioconductor
##   TxDb.Scerevisiae.UCSC.sacCer3.sgdGene           3.2.2          2024-01-16 [2] Bioconductor
##   tximeta                                         1.21.2         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tximport                                        1.31.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tximportData                                    1.31.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   TypeInfo                                        1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   tzdb                                            0.4.0          2023-05-12 [2] CRAN (R 4.4.0)
##   UCell                                           2.7.3          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   ucminf                                          1.2.1          2023-12-13 [2] CRAN (R 4.4.0)
##   UCSCRepeatMasker                                3.17.3         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   Ularcirc                                        1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   umap                                            0.2.10.0       2023-02-01 [2] CRAN (R 4.4.0)
##   UMI4Cats                                        1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   uncoverappLib                                   1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   UNDO                                            1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   unifiedWMWqPCR                                  1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   UniProt.ws                                      2.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   UniProtKeywords                                 0.99.7         2024-01-24 [2] Bioconductor 3.19 (R 4.4.0)
##   uniqtag                                         1.0.1          2022-06-10 [2] CRAN (R 4.4.0)
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##   units                                           0.8-5          2023-11-28 [2] CRAN (R 4.4.0)
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##   updateObject                                    1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   UpSetR                                          1.4.0          2019-05-22 [2] CRAN (R 4.4.0)
##   urca                                            1.3-3          2022-08-29 [2] CRAN (R 4.4.0)
##   urlchecker                                      1.0.1          2021-11-30 [2] CRAN (R 4.4.0)
##   urltools                                        1.7.3          2019-04-14 [2] CRAN (R 4.4.0)
##   usethis                                         2.2.2          2023-07-06 [2] CRAN (R 4.4.0)
##   utf8                                            1.2.4          2023-10-22 [2] CRAN (R 4.4.0)
##   utils                                         * 4.4.0          2024-01-16 [3] local
##   uuid                                            1.2-0          2024-01-14 [2] CRAN (R 4.4.0)
##   uwot                                            0.1.16         2023-06-29 [2] CRAN (R 4.4.0)
##   V8                                              4.4.1          2023-12-04 [2] CRAN (R 4.4.0)
##   VAExprs                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   valr                                            0.7.0          2023-09-18 [2] CRAN (R 4.4.0)
##   VAM                                             1.1.0          2023-11-05 [2] CRAN (R 4.4.0)
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##   VarCon                                          1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VarfromPDB                                      2.2.10         2018-09-13 [2] CRAN (R 4.4.0)
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##   variancePartition                               1.33.8         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VariantAnnotation                               1.49.6         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VariantExperiment                               1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VariantFiltering                                1.39.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   variants                                        1.27.0         2024-01-26 [2] Bioconductor 3.19 (R 4.4.0)
##   VariantTools                                    1.45.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VariantToolsData                                1.27.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   varSelRF                                        0.7-8          2017-07-10 [2] CRAN (R 4.4.0)
##   VaSP                                            1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   vbmp                                            1.71.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   vcd                                             1.4-12         2023-12-29 [2] CRAN (R 4.4.0)
##   VCFArray                                        1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   vcfR                                            1.15.0         2023-12-08 [2] CRAN (R 4.4.0)
##   vctrs                                           0.6.5          2023-12-01 [2] CRAN (R 4.4.0)
##   vdiffr                                          1.0.7          2023-09-22 [2] CRAN (R 4.4.0)
##   VDJdive                                         1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VectraPolarisData                               1.7.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   VegaMC                                          3.41.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   vegan                                           2.6-4          2022-10-11 [2] CRAN (R 4.4.0)
##   velociraptor                                    1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   veloviz                                         1.9.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   venn                                            1.12           2024-01-08 [2] CRAN (R 4.4.0)
##   VennDetail                                      1.19.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VennDiagram                                     1.7.3          2022-04-12 [2] CRAN (R 4.4.0)
##   venneuler                                       1.1-4          2024-01-14 [2] CRAN (R 4.4.0)
##   verification                                    1.42           2015-07-15 [2] CRAN (R 4.4.0)
##   VERSO                                           1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VGAM                                            1.1-9          2023-09-19 [2] CRAN (R 4.4.0)
##   vidger                                          1.23.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VIM                                             6.2.2          2022-08-25 [2] CRAN (R 4.4.0)
##   vioplot                                         0.4.0          2022-12-09 [2] CRAN (R 4.4.0)
##   viper                                           1.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   vipor                                           0.4.7          2023-12-18 [2] CRAN (R 4.4.0)
##   viridis                                         0.6.4          2023-07-22 [2] CRAN (R 4.4.0)
##   viridisLite                                     0.4.2          2023-05-02 [2] CRAN (R 4.4.0)
##   visdat                                          0.6.0          2023-02-02 [2] CRAN (R 4.4.0)
##   ViSEAGO                                         1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VisiumIO                                        0.99.3         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   visNetwork                                      2.1.2          2022-09-29 [2] CRAN (R 4.4.0)
##   vissE                                           1.11.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Voyager                                         1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   VplotR                                          1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   vroom                                           1.6.5          2023-12-05 [2] CRAN (R 4.4.0)
##   vsclust                                         1.5.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   vsn                                             3.71.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   vtpnet                                          0.43.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   vulcan                                          1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   vulcandata                                      1.25.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   waddR                                           1.17.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   waffle                                          1.0.2          2023-09-30 [2] CRAN (R 4.4.0)
##   waiter                                          0.2.5          2022-01-03 [2] CRAN (R 4.4.0)
##   waldo                                           0.5.2          2023-11-02 [2] CRAN (R 4.4.0)
##   warp                                            0.2.1          2023-11-02 [2] CRAN (R 4.4.0)
##   wateRmelon                                      2.9.1          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   wavClusteR                                      2.37.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   waveslim                                        1.8.4          2022-08-14 [2] CRAN (R 4.4.0)
##   wavethresh                                      4.7.2          2022-11-16 [2] CRAN (R 4.4.0)
##   wdm                                             0.2.4          2023-08-10 [2] CRAN (R 4.4.0)
##   weaver                                          1.69.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   webbioc                                         1.75.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   webchem                                         1.3.0          2023-06-09 [2] CRAN (R 4.4.0)
##   webdriver                                       1.0.6          2021-01-12 [2] CRAN (R 4.4.0)
##   WeberDivechaLCdata                              1.5.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   webmockr                                        0.9.0          2023-02-28 [2] CRAN (R 4.4.0)
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##   websocket                                       1.4.1          2021-08-18 [2] CRAN (R 4.4.0)
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##   weitrix                                         1.15.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   WES.1KG.WUGSC                                   1.35.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   wesanderson                                     0.3.7          2023-10-31 [2] CRAN (R 4.4.0)
##   WGCNA                                           1.72-5         2023-12-07 [2] CRAN (R 4.4.0)
##   WGSmapp                                         1.15.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   wheatmap                                        0.2.0          2022-02-27 [2] CRAN (R 4.4.0)
##   whisker                                         0.4.1          2022-12-05 [2] CRAN (R 4.4.0)
##   widgetTools                                     1.81.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
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##   wiggleplotr                                     1.27.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   WikidataQueryServiceR                           1.0.0          2020-06-16 [2] CRAN (R 4.4.0)
##   WikidataR                                       2.3.3          2021-11-16 [2] CRAN (R 4.4.0)
##   WikipediR                                       1.5.0          2017-02-05 [2] CRAN (R 4.4.0)
##   wikitaxa                                        0.4.0          2020-06-29 [2] CRAN (R 4.4.0)
##   withr                                           3.0.0          2024-01-16 [2] CRAN (R 4.4.0)
##   wk                                              0.9.1          2023-11-29 [2] CRAN (R 4.4.0)
##   word2vec                                        0.4.0          2023-10-07 [2] CRAN (R 4.4.0)
##   wordcloud                                       2.6            2018-08-24 [2] CRAN (R 4.4.0)
##   wordcloud2                                      0.2.1          2018-01-03 [2] CRAN (R 4.4.0)
##   worrms                                          0.4.3          2023-06-20 [2] CRAN (R 4.4.0)
##   wpm                                             1.13.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   wppi                                            1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   Wrench                                          1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   writexl                                         1.4.2          2023-01-06 [2] CRAN (R 4.4.0)
##   WriteXLS                                        6.5.0          2024-01-09 [2] CRAN (R 4.4.0)
##   wrswoR                                          1.1.1          2020-07-26 [2] CRAN (R 4.4.0)
##   xcms                                            4.1.6          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   xcore                                           1.7.0          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   xcoredata                                       1.7.0          2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   XDE                                             2.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
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##   xgboost                                         1.7.7.1        2024-01-25 [2] CRAN (R 4.4.0)
##   XhybCasneuf                                     1.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   XINA                                            1.21.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   XLConnect                                       1.0.7          2023-01-24 [2] CRAN (R 4.4.0)
##   xlsx                                            0.6.5          2020-11-10 [2] CRAN (R 4.4.0)
##   xlsxjars                                        0.6.1          2014-08-22 [2] CRAN (R 4.4.0)
##   xmapbridge                                      1.61.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   XML                                             3.99-0.16.1    2024-01-22 [2] CRAN (R 4.4.0)
##   xml2                                            1.3.6          2023-12-04 [2] CRAN (R 4.4.0)
##   XML2R                                           0.0.6          2014-03-10 [2] CRAN (R 4.4.0)
##   xmlparsedata                                    1.0.5          2021-03-06 [2] CRAN (R 4.4.0)
##   XNAString                                       1.11.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##   xopen                                           1.0.0          2018-09-17 [2] CRAN (R 4.4.0)
##   xtable                                          1.8-4          2019-04-21 [2] CRAN (R 4.4.0)
##   XtraSNPlocs.Hsapiens.dbSNP144.GRCh37            0.99.12        2024-01-16 [2] Bioconductor
##   XtraSNPlocs.Hsapiens.dbSNP144.GRCh38            0.99.12        2024-01-16 [2] Bioconductor
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##   XVector                                         0.43.1         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
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##   yaml                                            2.3.8          2023-12-11 [2] CRAN (R 4.4.0)
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##   yeastNagalakshmi                                1.39.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
##   yeastRNASeq                                     0.41.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
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##   zebrafishRNASeq                                 1.23.0         2024-01-25 [2] Bioconductor 3.19 (R 4.4.0)
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##   zFPKM                                           1.25.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
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##   zlibbioc                                        1.49.0         2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
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##   ZygosityPredictor                               1.3.6          2024-01-28 [2] Bioconductor 3.19 (R 4.4.0)
##  
##   [1] /tmp/RtmpdXMzMf/Rinst17da883002e01b
##   [2] /home/biocbuild/bbs-3.19-bioc/R/site-library
##   [3] /home/biocbuild/bbs-3.19-bioc/R/library
##  
##  ─ Python configuration ────────────────────────────────────────────────────
##   Python is not available
##  
##  ───────────────────────────────────────────────────────────────────────────
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