Download stats for software package PathoStat

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Versions

Installed Packages

Installation paths relative to:

/home/ubuntu/bio-web-stats/.venv/lib/python3.10/site-packages

Package	Version	Installed Path
alembic	1.13.1
awswrangler	3.7.2
beautifulsoup4	4.12.2
black	23.10.0
blinker	1.7.0
boto3	1.34.15
botocore	1.34.15
cachelib	0.9.0
certifi	2023.11.17
charset-normalizer	3.3.2
click	8.1.7
coverage	7.4.0
cramjam	2.7.0
dnspython	2.4.2
email-validator	2.0.0.post2
environs	9.5.0
exceptiongroup	1.2.0
factory-boy	3.3.0
Faker	22.1.0
fastparquet	2023.10.1
flake8	6.1.0
flake8-blind-except	0.2.1
flake8-debugger	4.1.2
flake8-docstrings	1.7.0
flake8-isort	6.1.0
flask	2.3.3
Flask-Caching	2.1.0
Flask-DebugToolbar	0.13.1
Flask-Migrate	4.0.5
flask-sqlalchemy	3.1.1
Flask-Static-Digest	0.4.0
flask-wtf	1.2.1
fsspec	2023.12.2
gevent	23.9.1
greenlet	3.0.1
gunicorn	21.2.0
idna	3.6
iniconfig	2.0.0
isort	5.12.0
itsdangerous	2.1.2
Jinja2	3.1.2
jmespath	1.0.1
Mako	1.3.0
MarkupSafe	2.1.3
marshmallow	3.20.2
mccabe	0.7.0
mypy-extensions	1.0.0
numpy	1.26.3
packaging	23.2
pandas	2.1.4
pathspec	0.12.1
pep8-naming	0.13.3
pip	22.0.2
platformdirs	4.1.0
playwright	1.40.0
pluggy	1.3.0
psycopg2-binary	2.9.9
pyarrow	15.0.2
pycodestyle	2.11.1
pydocstyle	6.3.0
pyee	11.0.1
pyflakes	3.1.0
pytest	7.4.2
pytest-base-url	2.0.0
pytest-cov	4.1.0
pytest-playwright	0.4.3
python-dateutil	2.8.2
python-dotenv	1.0.0
python-slugify	8.0.1
pytz	2023.3.post1
requests	2.31.0
s3transfer	0.10.0
setuptools	59.6.0
six	1.16.0
snowballstemmer	2.2.0
soupsieve	2.5
SQLAlchemy	2.0.22
supervisor	4.2.5
text-unidecode	1.3
tomli	2.0.1
typing-extensions	4.9.0
tzdata	2023.4
urllib3	2.0.7
waitress	2.1.2
WebOb	1.8.7
webstats-web	0.1.1
WebTest	3.0.0
werkzeug	2.3.7
wheel	0.37.1
wtforms	3.1.0
zope.event	5.0
zope.interface	6.1

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Resource Usage

Resource	Value
User CPU time	9.151 msec
System CPU time	0.000 msec
Total CPU time	9.151 msec
Elapsed time	31.054 msec
Context switches	5 voluntary, 0 involuntary

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HTTP Headers

Key	Value
HTTP_CONNECTION	Keep-Alive
HTTP_HOST	master.bioconductor.org
HTTP_USER_AGENT	Amazon CloudFront
QUERY_STRING
REMOTE_ADDR	172.30.2.48
REQUEST_METHOD	GET
SCRIPT_NAME
SERVER_NAME	0.0.0.0
SERVER_PORT	8000
SERVER_PROTOCOL	HTTP/1.1
SERVER_SOFTWARE	gunicorn/21.2.0

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Request Vars

View information

View Function	args	kwargs
bioc_webstats.stats.show_package_details	[]	category=bioc, package=PathoStat

COOKIES Variables

Variable	Value

SESSION Variables

No SESSION data

GET Variables

Variable	Value

POST Variables

Variable	Value

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Config

Key	Value
APPLICATION_ROOT	`'/'`
AWS_PARAMETER_PATH	`None`
CACHE_TYPE	`'SimpleCache'`
DEBUG	`True`
DEBUG_TB_ENABLED	`True`
DEBUG_TB_HOSTS	`()`
DEBUG_TB_INTERCEPT_REDIRECTS	`False`
DEBUG_TB_PANELS	('flask_debugtoolbar.panels.versions.VersionDebugPanel', 'flask_debugtoolbar.panels.timer.TimerDebugPanel', 'flask_debugtoolbar.panels.headers.HeaderDebugPanel', 'flask_debugtoolbar.panels.request_vars.RequestVarsDebugPanel', 'flask_debugtoolbar.panels.config_vars.ConfigVarsDebugPanel', 'flask_debugtoolbar.panels.template.TemplateDebugPanel', 'flask_debugtoolbar.panels.sqlalchemy.SQLAlchemyDebugPanel', 'flask_debugtoolbar.panels.logger.LoggingPanel', 'flask_debugtoolbar.panels.route_list.RouteListDebugPanel', 'flask_debugtoolbar.panels.profiler.ProfilerDebugPanel', 'flask_debugtoolbar.panels.g.GDebugPanel')
ENV	`'development'`
EXPLAIN_TEMPLATE_LOADING	`False`
FLASK_STATIC_DIGEST_BLACKLIST_FILTER	`[]`
FLASK_STATIC_DIGEST_COMPRESSION	`['gzip']`
FLASK_STATIC_DIGEST_HOST_URL	`None`
MAX_CONTENT_LENGTH	`None`
MAX_COOKIE_SIZE	`4093`
PERMANENT_SESSION_LIFETIME	`datetime.timedelta(days=31)`
PREFERRED_URL_SCHEME	`'http'`
PROPAGATE_EXCEPTIONS	`None`
SECRET_KEY	`'1849cb85026145adc5164b9568d6afbde65351264f87c25aebdadc576ae662f5'`
SEND_FILE_MAX_AGE_DEFAULT	`604800`
SERVER_NAME	`None`
SESSION_COOKIE_DOMAIN	`None`
SESSION_COOKIE_HTTPONLY	`True`
SESSION_COOKIE_NAME	`'session'`
SESSION_COOKIE_PATH	`None`
SESSION_COOKIE_SAMESITE	`None`
SESSION_COOKIE_SECURE	`False`
SESSION_REFRESH_EACH_REQUEST	`True`
SQLALCHEMY_BINDS	`{}`
SQLALCHEMY_DATABASE_URI	`'postgresql://postgres:NUhuT2Kt0oHGKDmdbt2I@bioc-webstats-prod2-cluster.cluster-c3dvjslgzl5u.us-east-1.rds.amazonaws.com:5432/webstats'`
SQLALCHEMY_ECHO	`False`
SQLALCHEMY_ENGINE_OPTIONS	`{}`
SQLALCHEMY_RECORD_QUERIES	`False`
SQLALCHEMY_TRACK_MODIFICATIONS	`False`
TEMPLATES_AUTO_RELOAD	`None`
TESTING	`False`
TRAP_BAD_REQUEST_ERRORS	`None`
TRAP_HTTP_EXCEPTIONS	`False`
URI_PATH_PREFIX	`'/packages/stats'`
USE_X_SENDFILE	`False`
WTF_CSRF_CHECK_DEFAULT	`True`
WTF_CSRF_ENABLED	`True`
WTF_CSRF_FIELD_NAME	`'csrf_token'`
WTF_CSRF_HEADERS	`['X-CSRFToken', 'X-CSRF-Token']`
WTF_CSRF_METHODS	`{'POST', 'DELETE', 'PATCH', 'PUT'}`
WTF_CSRF_SSL_STRICT	`True`
WTF_CSRF_TIME_LIMIT	`3600`

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Templates

stats-bioc.html

Variable	Value
category	'bioc'
category_index_page	'/packages/stats/index.html'
category_name	'software'
category_stem	'bioc'
csrf_token	<function generate_csrf at 0x7fa0a74ac160>
data_by_year	{2024: [{'year': 2024, 'month': 'Jan', 'unique_ips': 49, 'downloads': 186}, {'year': 2024, 'month': 'Feb', 'unique_ips': 65, 'downloads': 81}, {'year': 2024, 'month': 'Mar', 'unique_ips': 108, 'downloads': 192}, {'year': 2024, 'month': 'Apr', 'unique_ips': 68, 'downloads': 187}, {'year': 2024, 'month': 'May', 'unique_ips': 0, 'downloads': 0}, {'year': 2024, 'month': 'Jun', 'unique_ips': 0, 'downloads': 0}, {'year': 2024, 'month': 'Jul', 'unique_ips': 0, 'downloads': 0}, {'year': 2024, 'month': 'Aug', 'unique_ips': 0, 'downloads': 0}, {'year': 2024, 'month': 'Sep', 'unique_ips': 0, 'downloads': 0}, {'year': 2024, 'month': 'Oct', 'unique_ips': 0, 'downloads': 0}, {'year': 2024, 'month': 'Nov', 'unique_ips': 0, 'downloads': 0}, {'year': 2024, 'month': 'Dec', 'unique_ips': 0, 'downloads': 0}, {'year': 2024, 'month': 'all', 'unique_ips': 268, 'downloads': 646}], 2023: [{'year': 2023, 'month': 'Jan', 'unique_ips': 38, 'downloads': 56}, {'year': 2023, 'month': 'Feb', 'unique_ips': 35, 'downloads': 50}, {'year': 2023, 'month': 'Mar', 'unique_ips': 39, 'downloads': 53}, {'year': 2023, 'month': 'Apr', 'unique_ips': 52, 'downloads': 84}, {'year': 2023, 'month': 'May', 'unique_ips': 109, 'downloads': 119}, {'year': 2023, 'month': 'Jun', 'unique_ips': 37, 'downloads': 56}, {'year': 2023, 'month': 'Jul', 'unique_ips': 57, 'downloads': 91}, {'year': 2023, 'month': 'Aug', 'unique_ips': 68, 'downloads': 117}, {'year': 2023, 'month': 'Sep', 'unique_ips': 38, 'downloads': 50}, {'year': 2023, 'month': 'Oct', 'unique_ips': 40, 'downloads': 91}, {'year': 2023, 'month': 'Nov', 'unique_ips': 45, 'downloads': 127}, {'year': 2023, 'month': 'Dec', 'unique_ips': 35, 'downloads': 73}, {'year': 2023, 'month': 'all', 'unique_ips': 490, 'downloads': 967}], 2022: [{'year': 2022, 'month': 'Jan', 'unique_ips': 56, 'downloads': 102}, {'year': 2022, 'month': 'Feb', 'unique_ips': 54, 'downloads': 86}, {'year': 2022, 'month': 'Mar', 'unique_ips': 59, 'downloads': 95}, {'year': 2022, 'month': 'Apr', 'unique_ips': 51, 'downloads': 81}, {'year': 2022, 'month': 'May', 'unique_ips': 57, 'downloads': 68}, {'year': 2022, 'month': 'Jun', 'unique_ips': 34, 'downloads': 43}, {'year': 2022, 'month': 'Jul', 'unique_ips': 47, 'downloads': 64}, {'year': 2022, 'month': 'Aug', 'unique_ips': 27, 'downloads': 42}, {'year': 2022, 'month': 'Sep', 'unique_ips': 22, 'downloads': 47}, {'year': 2022, 'month': 'Oct', 'unique_ips': 39, 'downloads': 56}, {'year': 2022, 'month': 'Nov', 'unique_ips': 51, 'downloads': 70}, {'year': 2022, 'month': 'Dec', 'unique_ips': 32, 'downloads': 38}, {'year': 2022, 'month': 'all', 'unique_ips': 404, 'downloads': 792}], 2021: [{'year': 2021, 'month': 'Jan', 'unique_ips': 53, 'downloads': 110}, {'year': 2021, 'month': 'Feb', 'unique_ips': 47, 'downloads': 121}, {'year': 2021, 'month': 'Mar', 'unique_ips': 81, 'downloads': 145}, {'year': 2021, 'month': 'Apr', 'unique_ips': 78, 'downloads': 151}, {'year': 2021, 'month': 'May', 'unique_ips': 69, 'downloads': 125}, {'year': 2021, 'month': 'Jun', 'unique_ips': 56, 'downloads': 105}, {'year': 2021, 'month': 'Jul', 'unique_ips': 63, 'downloads': 106}, {'year': 2021, 'month': 'Aug', 'unique_ips': 52, 'downloads': 98}, {'year': 2021, 'month': 'Sep', 'unique_ips': 69, 'downloads': 121}, {'year': 2021, 'month': 'Oct', 'unique_ips': 74, 'downloads': 126}, {'year': 2021, 'month': 'Nov', 'unique_ips': 49, 'downloads': 71}, {'year': 2021, 'month': 'Dec', 'unique_ips': 61, 'downloads': 110}, {'year': 2021, 'month': 'all', 'unique_ips': 604, 'downloads': 1389}], 2020: [{'year': 2020, 'month': 'Jan', 'unique_ips': 78, 'downloads': 147}, {'year': 2020, 'month': 'Feb', 'unique_ips': 46, 'downloads': 119}, {'year': 2020, 'month': 'Mar', 'unique_ips': 65, 'downloads': 177}, {'year': 2020, 'month': 'Apr', 'unique_ips': 64, 'downloads': 135}, {'year': 2020, 'month': 'May', 'unique_ips': 61, 'downloads': 130}, {'year': 2020, 'month': 'Jun', 'unique_ips': 65, 'downloads': 183}, {'year': 2020, 'month': 'Jul', 'unique_ips': 49, 'downloads': 110}, {'year': 2020, 'month': 'Aug', 'unique_ips': 62, 'downloads': 153}, {'year': 2020, 'month': 'Sep', 'unique_ips': 64, 'downloads': 179}, {'year': 2020, 'month': 'Oct', 'unique_ips': 69, 'downloads': 134}, {'year': 2020, 'month': 'Nov', 'unique_ips': 45, 'downloads': 127}, {'year': 2020, 'month': 'Dec', 'unique_ips': 40, 'downloads': 101}, {'year': 2020, 'month': 'all', 'unique_ips': 537, 'downloads': 1695}], 2019: [{'year': 2019, 'month': 'Jan', 'unique_ips': 92, 'downloads': 162}, {'year': 2019, 'month': 'Feb', 'unique_ips': 76, 'downloads': 134}, {'year': 2019, 'month': 'Mar', 'unique_ips': 89, 'downloads': 135}, {'year': 2019, 'month': 'Apr', 'unique_ips': 87, 'downloads': 140}, {'year': 2019, 'month': 'May', 'unique_ips': 91, 'downloads': 183}, {'year': 2019, 'month': 'Jun', 'unique_ips': 82, 'downloads': 124}, {'year': 2019, 'month': 'Jul', 'unique_ips': 85, 'downloads': 149}, {'year': 2019, 'month': 'Aug', 'unique_ips': 46, 'downloads': 86}, {'year': 2019, 'month': 'Sep', 'unique_ips': 45, 'downloads': 91}, {'year': 2019, 'month': 'Oct', 'unique_ips': 51, 'downloads': 86}, {'year': 2019, 'month': 'Nov', 'unique_ips': 50, 'downloads': 147}, {'year': 2019, 'month': 'Dec', 'unique_ips': 38, 'downloads': 129}, {'year': 2019, 'month': 'all', 'unique_ips': 617, 'downloads': 1566}], 2018: [{'year': 2018, 'month': 'Jan', 'unique_ips': 88, 'downloads': 129}, {'year': 2018, 'month': 'Feb', 'unique_ips': 102, 'downloads': 136}, {'year': 2018, 'month': 'Mar', 'unique_ips': 97, 'downloads': 135}, {'year': 2018, 'month': 'Apr', 'unique_ips': 137, 'downloads': 258}, {'year': 2018, 'month': 'May', 'unique_ips': 112, 'downloads': 163}, {'year': 2018, 'month': 'Jun', 'unique_ips': 110, 'downloads': 171}, {'year': 2018, 'month': 'Jul', 'unique_ips': 89, 'downloads': 123}, {'year': 2018, 'month': 'Aug', 'unique_ips': 66, 'downloads': 103}, {'year': 2018, 'month': 'Sep', 'unique_ips': 85, 'downloads': 144}, {'year': 2018, 'month': 'Oct', 'unique_ips': 89, 'downloads': 161}, {'year': 2018, 'month': 'Nov', 'unique_ips': 94, 'downloads': 176}, {'year': 2018, 'month': 'Dec', 'unique_ips': 74, 'downloads': 126}, {'year': 2018, 'month': 'all', 'unique_ips': 913, 'downloads': 1825}], 2017: [{'year': 2017, 'month': 'Jan', 'unique_ips': 57, 'downloads': 78}, {'year': 2017, 'month': 'Feb', 'unique_ips': 85, 'downloads': 130}, {'year': 2017, 'month': 'Mar', 'unique_ips': 90, 'downloads': 175}, {'year': 2017, 'month': 'Apr', 'unique_ips': 135, 'downloads': 198}, {'year': 2017, 'month': 'May', 'unique_ips': 85, 'downloads': 121}, {'year': 2017, 'month': 'Jun', 'unique_ips': 141, 'downloads': 192}, {'year': 2017, 'month': 'Jul', 'unique_ips': 90, 'downloads': 124}, {'year': 2017, 'month': 'Aug', 'unique_ips': 87, 'downloads': 156}, {'year': 2017, 'month': 'Sep', 'unique_ips': 76, 'downloads': 107}, {'year': 2017, 'month': 'Oct', 'unique_ips': 95, 'downloads': 152}, {'year': 2017, 'month': 'Nov', 'unique_ips': 100, 'downloads': 167}, {'year': 2017, 'month': 'Dec', 'unique_ips': 85, 'downloads': 148}, {'year': 2017, 'month': 'all', 'unique_ips': 908, 'downloads': 1748}], 2016: [{'year': 2016, 'month': 'Jan', 'unique_ips': 0, 'downloads': 0}, {'year': 2016, 'month': 'Feb', 'unique_ips': 0, 'downloads': 0}, {'year': 2016, 'month': 'Mar', 'unique_ips': 0, 'downloads': 0}, {'year': 2016, 'month': 'Apr', 'unique_ips': 0, 'downloads': 0}, {'year': 2016, 'month': 'May', 'unique_ips': 0, 'downloads': 0}, {'year': 2016, 'month': 'Jun', 'unique_ips': 0, 'downloads': 0}, {'year': 2016, 'month': 'Jul', 'unique_ips': 0, 'downloads': 0}, {'year': 2016, 'month': 'Aug', 'unique_ips': 0, 'downloads': 0}, {'year': 2016, 'month': 'Sep', 'unique_ips': 0, 'downloads': 0}, {'year': 2016, 'month': 'Oct', 'unique_ips': 33, 'downloads': 48}, {'year': 2016, 'month': 'Nov', 'unique_ips': 69, 'downloads': 94}, {'year': 2016, 'month': 'Dec', 'unique_ips': 97, 'downloads': 132}, {'year': 2016, 'month': 'all', 'unique_ips': 188, 'downloads': 274}]}
deprecated_version	'3.19'
first_year	2016
g	<flask.g of 'bioc_webstats'>
generated_date	datetime.date(2024, 4, 15)
last_year	2024
package	'PathoStat'
request	<Request 'http://master.bioconductor.org/packages/stats/bioc/PathoStat/' [GET]>
session	<SecureCookieSession {}>

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SQLAlchemy queries

Queries Unavailable

The toolbar was unable to fetch the SQLAlchemy queries for this request. To enable the SQLAlchemy query display, please:

Install required libraries:
- Flask-SQLAlchemy

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Log Messages

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Route List

URL route	Endpoint name	HTTP methods	Is alias	Redirect to
/	spash.home	GET, HEAD, OPTIONS	False	None
/packages/stats/	stats.show_package_summary	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>.html	stats.show_package_summary	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/	stats.show_package_details	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>	stats.show_package_details	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>/	stats.show_package_details	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>/index.html	stats.show_package_details	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>_<year>_stats.tab	stats.show_package_stats	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>_pkg_scores.tab	stats.show_package_scores	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>_stats.tab	stats.show_package_stats	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package_path>/<package>_<year>_stats.tab	stats.show_package_stats	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package_path>/<package>_stats.tab	stats.show_package_stats	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/index.html	stats.show_package_details	GET, HEAD, OPTIONS	False	None
/packages/stats/bioc/bioc_packages.txt	stats.show_packages	GET, HEAD, OPTIONS	False	None
/packages/stats/index.html	stats.show_package_summary	GET, HEAD, OPTIONS	False	None
/packages/stats/static/<path:filename>	stats.static_files	GET, HEAD, OPTIONS	False	None
/static/<path:filename>	static	GET, HEAD, OPTIONS	False	None

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flask.g content

Key	Value
debug_toolbar	<flask_debugtoolbar.DebugToolbarExtension object at 0x7fa0a7337010>

Download stats for software package PathoStat

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2022

2021

2020

2019

2018

2017

2016

Versions

Installed Packages

Resource Usage

HTTP Headers

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COOKIES Variables

SESSION Variables

GET Variables

POST Variables

Config

Templates

stats-bioc.html

SQLAlchemy queries

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