rnaseqcomp
Benchmarks for RNA-seq Quantification Pipelines
Bioconductor version: 3.23 · Package version: 1.42.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rnaseqcomp")Details
| Maintainer | Mingxiang Teng <tengmx@gmail.com> |
| Author | Mingxiang Teng and Rafael A. Irizarry |
| License | GPL-3 |
| URL | https://github.com/tengmx/rnaseqcomp |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | QualityControl, RNASeq, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/rnaseqcomp/ |
Citation
From within R, enter citation("rnaseqcomp"):
Mingxiang Teng and Rafael A. Irizarry. rnaseqcomp: Benchmarks for RNA-seq Quantification Pipelines. doi:10.18129/B9.bioc.rnaseqcomp, R package version 1.42.0, https://bioconductor.org/packages/rnaseqcomp.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | rnaseqcomp_1.42.0.tar.gz |
| Windows binary (x86_64) | rnaseqcomp_1.42.0.zip |
| macOS binary (arm64) | rnaseqcomp_1.42.0.tgz |
| macOS binary (x86_64) | rnaseqcomp_1.42.0.tgz |