muleaData
Genes Sets for Functional Enrichment Analysis with the 'mulea' R Package
Bioconductor version: Release (3.20)
ExperimentHubData package for the 'mulea' comprehensive overrepresentation and functional enrichment analyser R package. Here we provide ontologies (gene sets) in a data.frame for 27 different organisms, ranging from Escherichia coli to human, all acquired from publicly available data sources. Each ontology is provided with multiple gene and protein identifiers. Please see the NEWS file for a list of changes in each version.
Author: Eszter Ari [aut, cre] , Márton Ölbei [aut] , Lejla Gul [aut], Balázs Bohár [aut] , Tamás Stirling [aut]
Maintainer: Eszter Ari <arieszter at gmail.com>
citation("muleaData")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("muleaData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("muleaData")
muleaData | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Arabidopsis_thaliana_Data, Bacillus_subtilis_Data, Caenorhabditis_elegans_Data, ChIPSeqData, DNASeqData, Danio_rerio_Data, Drosophila_melanogaster_Data, Escherichia_coli_Data, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Pan_troglodytes_Data, Pseudomonas_aeruginosa_Data, Rattus_norvegicus_Data, Saccharomyces_cerevisiae_Data, Staphylococcus_aureus_Data, miRNAData |
Version | 1.1.0 |
License | MIT + file LICENSE |
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Imports | |
System Requirements | |
URL | https://github.com/ELTEbioinformatics/muleaData |
Bug Reports | https://support.bioconductor.org/tag/muleaData/issues |
See More
Suggests | knitr, rmarkdown, ExperimentHub, dplyr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
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Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | muleaData_1.1.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/muleaData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/muleaData |
Package Short Url | https://bioconductor.org/packages/muleaData/ |
Package Downloads Report | Download Stats |