onlineFDR

This is the released version of onlineFDR; for the devel version, see onlineFDR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Online error rate control

Bioconductor version: Release (3.23)

This package allows users to control the false discovery rate (FDR) or familywise error rate (FWER) for online multiple hypothesis testing, where hypotheses arrive in a stream. In this framework, a null hypothesis is rejected based on the evidence against it and on the previous rejection decisions.

Author: David S. Robertson [aut, cre], Lathan Liou [aut], Aaditya Ramdas [aut], Adel Javanmard [ctb], Andrea Montanari [ctb], Jinjin Tian [ctb], Tijana Zrnic [ctb], Natasha A. Karp [aut]

Maintainer: David S. Robertson <david.robertson at mrc-bsu.cam.ac.uk>

Citation (from within R, enter citation("onlineFDR")):

David S. Robertson, Lathan Liou, Aaditya Ramdas, Natasha A. Karp. onlineFDR: Online error rate control. doi:10.18129/B9.bioc.onlineFDR, R package version 2.20.0, https://bioconductor.org/packages/onlineFDR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("onlineFDR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("onlineFDR")

Advanced usage of onlineFDR	HTML	R Script
Using the onlineFDR package	HTML	R Script
The theory behind onlineFDR	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	MultipleComparison, Software, StatisticalMethod
Version	2.20.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	GPL-3
Depends
Imports	stats, Rcpp, progress
System Requirements
URL	https://dsrobertson.github.io/onlineFDR/index.html

Suggests	knitr, rmarkdown, testthat, covr
Linking To	Rcpp, RcppProgress
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	onlineFDR_2.20.0.tar.gz
Windows Binary (x86_64)	onlineFDR_2.20.0.zip
macOS Binary (big-sur-x86_64)	onlineFDR_2.20.0.tgz
macOS Binary (sonoma-arm64)	onlineFDR_2.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/onlineFDR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/onlineFDR
Package Short Url	https://bioconductor.org/packages/onlineFDR/
Package Downloads Report	Download Stats