To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("matchBox")

In most cases, you don't need to download the package archive at all.

matchBox

 

Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

Bioconductor version: Release (3.1)

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>

Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>

Citation (from within R, enter citation("matchBox")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("matchBox")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matchBox")

 

PDF R Script Working with the matchBox package
PDF   Reference Manual

Details

biocViews Annotation, Microarray, MultipleComparison, Software, Visualization
Version 1.10.0
In Bioconductor since BioC 2.11 (R-2.15) (2.5 years)
License Artistic-2.0
Depends R (>= 2.8.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source matchBox_1.10.0.tar.gz
Windows Binary matchBox_1.10.0.zip
Mac OS X 10.6 (Snow Leopard) matchBox_1.10.0.tgz
Mac OS X 10.9 (Mavericks) matchBox_1.10.0.tgz
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