interacCircos

DOI: 10.18129/B9.bioc.interacCircos    

The Generation of Interactive Circos Plot

Bioconductor version: Release (3.14)

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Author: Zhe Cui [aut, cre]

Maintainer: Zhe Cui <mrcuizhe at gmail.com>

Citation (from within R, enter citation("interacCircos")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("interacCircos")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("interacCircos")

 

HTML R Script interacCircos
PDF   Reference Manual

Details

biocViews Software, Visualization
Version 1.4.0
In Bioconductor since BioC 3.13 (R-4.1) (0.5 years)
License GPL-3
Depends R (>= 4.1)
Imports RColorBrewer, htmlwidgets, plyr, methods
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package interacCircos_1.4.0.tar.gz
Windows Binary interacCircos_1.4.0.zip
macOS 10.13 (High Sierra) interacCircos_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/interacCircos
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/interacCircos
Package Short Url https://bioconductor.org/packages/interacCircos/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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