To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("h5vc")

In most cases, you don't need to download the package archive at all.

h5vc

Managing alignment tallies using a hdf5 backend

Bioconductor version: Release (2.14)

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files. For detail see the webpage at http://www.ebi.ac.uk/~pyl/h5vc.

Author: Paul Theodor Pyl

Maintainer: Paul Theodor Pyl <pyl at embl.de>

Citation (from within R, enter citation("h5vc")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("h5vc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("h5vc")

 

HTML R Script Building a minimal genome browser with h5vc and shiny
HTML R Script h5vc - Tour
PDF   Reference Manual

Details

biocViews Software
Version 1.4.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>= 3)
Depends grid, gridExtra, ggplot2
Imports rhdf5, reshape, IRanges, Biostrings, Rsamtools, methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData
Suggests knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, bit64
System Requirements
URL
Depends On Me
Imports Me Rariant
Suggests Me h5vcData, SomaticSignatures

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source h5vc_1.4.0.tar.gz
Windows Binary h5vc_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) h5vc_1.4.0.tgz
Mac OS X 10.9 (Mavericks) h5vc_1.4.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center