genomeIntervals

DOI: 10.18129/B9.bioc.genomeIntervals    

Operations on genomic intervals

Bioconductor version: Release (3.7)

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Author: Julien Gagneur <gagneur at genzentrum.lmu.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme

Maintainer: Julien Gagneur <gagneur at genzentrum.lmu.de>

Citation (from within R, enter citation("genomeIntervals")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genomeIntervals")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genomeIntervals")

 

PDF R Script Overview of the genomeIntervals package.
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Genetics, Infrastructure, Software
Version 1.36.0
In Bioconductor since BioC 2.4 (R-2.9) (9.5 years)
License Artistic-2.0
Depends R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics(>= 0.15.2)
Imports GenomeInfoDb(>= 1.5.8), GenomicRanges(>= 1.21.16), IRanges(>= 2.3.14), S4Vectors(>= 0.7.10)
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me girafe
Imports Me easyRNASeq
Suggests Me RnaSeqTutorial
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package genomeIntervals_1.36.0.tar.gz
Windows Binary genomeIntervals_1.36.0.zip
Mac OS X 10.11 (El Capitan) genomeIntervals_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/genomeIntervals
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genomeIntervals
Package Short Url http://bioconductor.org/packages/genomeIntervals/
Package Downloads Report Download Stats

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