To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clstutils")

In most cases, you don't need to download the package archive at all.

clstutils

Tools for performing taxonomic assignment.

Bioconductor version: Release (3.0)

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at uw.edu>

Citation (from within R, enter citation("clstutils")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clstutils")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clstutils")

 

PDF R Script clst
PDF R Script clstutils
PDF   Reference Manual

Details

biocViews Classification, QualityControl, Sequencing, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R (>= 2.10), clst, rjson, ape
Imports lattice, RSQLite
LinkingTo
Suggests RUnit, RSVGTipsDevice
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clstutils_1.14.0.tar.gz
Windows Binary clstutils_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) clstutils_1.14.0.tgz
Mac OS X 10.9 (Mavericks) clstutils_1.14.0.tgz
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