To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clstutils")

In most cases, you don't need to download the package archive at all.

clstutils

Tools for performing taxonomic assignment.

Bioconductor version: Release (3.0)

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at uw.edu>

Citation (from within R, enter citation("clstutils")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clstutils")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clstutils")

 

PDF R Script clst
PDF R Script clstutils
PDF   Reference Manual

Details

biocViews Classification, QualityControl, Sequencing, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R (>= 2.10), clst, rjson, ape
Imports lattice, RSQLite
Suggests RUnit, RSVGTipsDevice
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clstutils_1.14.0.tar.gz
Windows Binary clstutils_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) clstutils_1.14.0.tgz
Mac OS X 10.9 (Mavericks) clstutils_1.14.0.tgz
Browse/checkout source (username/password: readonly)
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