Registration and Call for Abstracts Open for Bioc2024

SemDist

Information Accretion-based Function Predictor Evaluation


Bioconductor version: Release (3.18)

This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.

Author: Ian Gonzalez and Wyatt Clark

Maintainer: Ian Gonzalez <gonzalez.isv at gmail.com>

Citation (from within R, enter citation("SemDist")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SemDist")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SemDist")
introduction.pdf PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, Classification, GO, Software
Version 1.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL (>= 2)
Depends R (>= 3.1), AnnotationDbi, GO.db, annotate
Imports
System Requirements
URL http://github.com/iangonzalez/SemDist
See More
Suggests GOSemSim
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SemDist_1.36.0.tar.gz
Windows Binary SemDist_1.36.0.zip
macOS Binary (x86_64) SemDist_1.36.0.tgz
macOS Binary (arm64) SemDist_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SemDist
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SemDist
Bioc Package Browser https://code.bioconductor.org/browse/SemDist/
Package Short Url https://bioconductor.org/packages/SemDist/
Package Downloads Report Download Stats