To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SQUADD")

In most cases, you don't need to download the package archive at all.

SQUADD

Add-on of the SQUAD Software

Bioconductor version: Release (2.14)

This package SQUADD is a SQUAD add-on. It permits to generate SQUAD simulation matrix, prediction Heat-Map and Correlation Circle from PCA analysis.

Author: Martial Sankar, supervised by Christian Hardtke and Ioannis Xenarios

Maintainer: Martial Sankar <martial.sankar at unil.ch>

Citation (from within R, enter citation("SQUADD")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SQUADD")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SQUADD")

 

PDF R Script SQUADD package
PDF R Script SQUADD package
PDF   Reference Manual

Details

biocViews GraphAndNetwork, Network, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL (>=2)
Depends R (>= 2.11.0)
Imports graphics, grDevices, methods, RColorBrewer, stats, utils
Suggests
System Requirements
URL http://www.unil.ch/dbmv/page21142_en.html
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SQUADD_1.14.0.tar.gz
Windows Binary SQUADD_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SQUADD_1.14.0.tgz
Mac OS X 10.9 (Mavericks) SQUADD_1.14.0.tgz
Browse/checkout source (username/password: readonly)
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