To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RSVSim")

In most cases, you don't need to download the package archive at all.

RSVSim

RSVSim: an R/Bioconductor package for the simulation of structural variations

Bioconductor version: Release (3.0)

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at uni-muenster.de>

Citation (from within R, enter citation("RSVSim")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RSVSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RSVSim")

 

PDF R Script RSVSim: an R/Bioconductor package for the simulation of structural variations
PDF   Reference Manual

Details

biocViews Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 2.12 (R-3.0)
License LGPL-3
Depends R (>= 3.0.0), Biostrings, GenomicRanges
Imports methods, IRanges, ShortRead
Suggests BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, MASS, rtracklayer
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RSVSim_1.6.0.tar.gz
Windows Binary RSVSim_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RSVSim_1.6.0.tgz
Mac OS X 10.9 (Mavericks) RSVSim_1.6.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center