To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")

In most cases, you don't need to download the package archive at all.

RDRToolbox

A package for nonlinear dimension reduction with Isomap and LLE.

Bioconductor version: Release (3.0)

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>

Citation (from within R, enter citation("RDRToolbox")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDRToolbox")

 

PDF R Script A package for nonlinear dimension reduction with Isomap and LLE.
PDF   Reference Manual

Details

biocViews Clustering, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization
Version 1.16.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL (>= 2)
Depends R (>= 2.9.0)
Imports graphics, grDevices, methods, stats, MASS, rgl
LinkingTo
Suggests golubEsets
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Enhances
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Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RDRToolbox_1.16.0.tar.gz
Windows Binary RDRToolbox_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RDRToolbox_1.16.0.tgz
Mac OS X 10.9 (Mavericks) RDRToolbox_1.16.0.tgz
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