MSstatsPTM

DOI: 10.18129/B9.bioc.MSstatsPTM    

Statistical Characterization of Post-translational Modifications

Bioconductor version: Release (3.12)

MSstatsPTM provides general statistical methods for quantitative characterization of post-translational modifications (PTMs). Typically, the analysis involves the quantification of PTM sites (i.e., modified residues) and their corresponding proteins, as well as the integration of the quantification results. MSstatsPTM provides functions for summarization, estimation of PTM site abundance, and detection of changes in PTMs across experimental conditions.

Author: Tsung-Heng Tsai [aut, cre], Olga Vitek [aut]

Maintainer: Tsung-Heng Tsai <tsai.tsungheng at gmail.com>

Citation (from within R, enter citation("MSstatsPTM")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsPTM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsPTM")

 

HTML R Script Introduction to MSstatsPTM
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, MassSpectrometry, Proteomics, Software
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License Artistic-2.0
Depends R (>= 4.0)
Imports broom, dplyr, rlang, stats, tibble, tidyr, tidyselect, Biostrings
LinkingTo
Suggests knitr, rmarkdown, testthat (>= 2.1.0), BiocStyle
SystemRequirements
Enhances
URL
BugReports https://github.com/tsunghengtsai/MSstatsPTM
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsPTM_1.0.0.tar.gz
Windows Binary MSstatsPTM_1.0.0.zip
macOS 10.13 (High Sierra) MSstatsPTM_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsPTM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsPTM
Package Short Url https://bioconductor.org/packages/MSstatsPTM/
Package Downloads Report Download Stats

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