DTA

Dynamic Transcriptome Analysis

Bioconductor version: Release (2.14)

Dynamic Transcriptome Analysis (DTA) can monitor the cellular response to perturbations with higher sensitivity and temporal resolution than standard transcriptomics. The package implements the underlying kinetic modeling approach capable of the precise determination of synthesis- and decay rates from individual microarray or RNAseq measurements.

Author: Bjoern Schwalb, Benedikt Zacher, Sebastian Duemcke, Achim Tresch

Maintainer: Bjoern Schwalb <schwalb at lmb.uni-muenchen.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DTA")

To cite this package in a publication, start R and enter:

    citation("DTA")

Documentation

PDF R Script A guide to Dynamic Transcriptome Analysis (DTA)
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Software, Transcription
Version 2.10.0
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.10), LSD
Imports scatterplot3d
Suggests
System Requirements
URL
Depends On Me
Imports Me
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Package Downloads

Package Source DTA_2.10.0.tar.gz
Windows Binary DTA_2.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DTA_2.10.0.tgz
Mac OS X 10.9 (Mavericks)
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