DOI: 10.18129/B9.bioc.CancerSubtypes    

Cancer subtypes identification, validation and visualization based on multiple genomic data sets

Bioconductor version: Release (3.8)

CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.

Author: Taosheng Xu<taosheng.x at>, Thuc Le<Thuc.Le at>

Maintainer: Taosheng Xu<taosheng.x at>

Citation (from within R, enter citation("CancerSubtypes")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("CancerSubtypes", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews Clustering, GeneExpression, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 3.4 (R-3.3) (2.5 years)
License GPL (>= 2)
Depends R (>= 3.4), sigclust, NMF
Imports SNFtool, iCluster, cluster, impute, limma, ConsensusClusterPlus, grDevices, survival
Suggests BiocGenerics, RUnit, knitr, RTCGA.mRNA, RTCGA.clinical
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Source Package CancerSubtypes_1.8.0.tar.gz
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