To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BADER")

In most cases, you don't need to download the package archive at all.

BADER

Bayesian Analysis of Differential Expression in RNA Sequencing Data

Bioconductor version: Release (2.14)

For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.

Author: Andreas Neudecker, Matthias Katzfuss

Maintainer: Andreas Neudecker <a.neudecker at arcor.de>

To install this package, start R and enter:

Citation (from within R, enter citation("BADER")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("BADER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BADER")

 

PDF R Script Analysing RNA-Seq data with the "BADER" package
PDF   Reference Manual

Details

biocViews DifferentialExpression, RNASeq, SAGE, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends
Imports
Suggests pasilla(>= 0.2.10)
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BADER_1.2.0.tar.gz
Windows Binary BADER_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BADER_1.2.0.tgz
Mac OS X 10.9 (Mavericks) BADER_1.2.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center