methInheritSim

This is the released version of methInheritSim; for the devel version, see methInheritSim.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Bioconductor version: Release (3.23)

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid Deschênes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Citation (from within R, enter citation("methInheritSim")):

Pascal Belleau, Astrid Deschênes and Arnaud Droit. methInheritSim: Simulating Whole-Genome Inherited Bisulphite Sequencing Data. doi:10.18129/B9.bioc.methInheritSim, R package version 1.34.0, https://bioconductor.org/packages/methInheritSim.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methInheritSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methInheritSim")

Simulating Whole-Genome Inherited Bisulphite Sequencing Data	HTML	R Script
Reference Manual	PDF
README	Text
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version	1.34.0
In Bioconductor since	BioC 3.6 (R-3.4) (9 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	methylKit, GenomicRanges, Seqinfo, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm
System Requirements
URL	https://github.com/belleau/methInheritSim
Bug Reports	https://github.com/belleau/methInheritSim/issues

Suggests	BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	methylInheritance
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methInheritSim_1.34.0.tar.gz
Windows Binary (x86_64)	methInheritSim_1.34.0.zip
macOS Binary (big-sur-x86_64)	methInheritSim_1.34.0.tgz
macOS Binary (sonoma-arm64)	methInheritSim_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/methInheritSim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/methInheritSim
Package Short Url	https://bioconductor.org/packages/methInheritSim/
Package Downloads Report	Download Stats