gtrellis
Genome Level Trellis Layout
Bioconductor version: 3.23 · Package version: 1.44.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gtrellis")Details
| Maintainer | Zuguang Gu <guzuguang@suat-sz.edu.cn> |
| Author | Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>) |
| License | MIT + file LICENSE |
| URL | https://github.com/jokergoo/gtrellis |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Sequencing, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/gtrellis/ |
Citation
From within R, enter citation("gtrellis"):
Zuguang Gu. gtrellis: Genome Level Trellis Layout. doi:10.18129/B9.bioc.gtrellis, R package version 1.44.0, https://bioconductor.org/packages/gtrellis.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | gtrellis_1.44.0.tar.gz |
| Windows binary (x86_64) | gtrellis_1.44.0.zip |
| macOS binary (arm64) | gtrellis_1.44.0.tgz |
| macOS binary (x86_64) | gtrellis_1.44.0.tgz |
Dependencies
Depends: R (>= 4.0.0), grid, IRanges, GenomicRanges
Imports: circlize (>= 0.4.8), GetoptLong, grDevices, utils
Suggests: testthat (>= 1.0.0), knitr, RColorBrewer, markdown, rmarkdown, ComplexHeatmap (>= 1.99.0), Cairo, png, jpeg, tiff
Reverse dependencies
Imports Me (1): YAPSA