curatedBreastData

This is the development version of curatedBreastData; for the stable release version, see curatedBreastData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Curated breast cancer gene expression data with survival and treatment information

Bioconductor version: Development (3.24)

Curated human breast cancer tissue S4 ExpresionSet datasets from over 16 clinical trials comprising over 2,000 patients. All datasets contain at least one type of outcomes variable and treatment information (minimum level: whether they had chemotherapy and whether they had hormonal therapy). Includes code to post-process these datasets.

Author: Katie Planey [aut] ORCID: 0000-0002-3482-1929 , Levi Waldron [aut, cre] ORCID: 0000-0003-2725-0694

Maintainer: Levi Waldron <lwaldron.research at gmail.com>

Citation (from within R, enter citation("curatedBreastData")):

Katie Planey, Levi Waldron. curatedBreastData: Curated breast cancer gene expression data with survival and treatment information. doi:10.18129/B9.bioc.curatedBreastData, R package version 2.41.3, https://bioconductor.org/packages/curatedBreastData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("curatedBreastData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BreastCancerData, CancerData, ExperimentData, ExpressionData, GEO, MicroarrayData, Tissue, TissueMicroarrayData, qPCRData
Version	2.41.3
In Bioconductor since	BioC 3.1 (R-3.2) (11.5 years)
License	GPL (>= 2)
Depends	R (>= 4.6.0), XML, ggplot2, impute, Biobase, BiocStyle
Imports	methods, stats, BiocFileCache, utils
System Requirements
URL	https://waldronlab.io/curatedBreastData/
Bug Reports	https://github.com/waldronlab/curatedBreastData/issues

Suggests	testthat, roxygen2, knitr, rmarkdown
Linking To
Enhances
Depends On Me
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	curatedBreastData_2.41.3.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/curatedBreastData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/curatedBreastData
Package Short Url	https://bioconductor.org/packages/curatedBreastData/
Package Downloads Report	Download Stats