curatedAdipoRNA

DOI: 10.18129/B9.bioc.curatedAdipoRNA    

This is the development version of curatedAdipoRNA; to use it, please install the devel version of Bioconductor.

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Bioconductor version: Development (3.10)

A curated dataset of RNA-Seq samples. The samples are MDI-induced pre-phagocytes (3T3-L1) at different time points/stage of differentiation. The package document the data collection, pre-processing and processing. In addition to the documentation, the package contains the scripts that was used to generated the data.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Citation (from within R, enter citation("curatedAdipoRNA")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("curatedAdipoRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedAdipoRNA")

 

HTML R Script Using curatedAdipoRNA
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, GEO, RNASeqData, SequencingData
Version 1.1.0
License GPL-3
Depends R (>= 3.6), SummarizedExperiment
Imports
LinkingTo
Suggests knitr, rmarkdown, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2, S4Vectors
SystemRequirements
Enhances
URL https://github.com/MahShaaban/curatedAdipoRNA
BugReports https://github.com/MahShaaban/curatedAdipoRNA/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedAdipoRNA_1.1.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/curatedAdipoRNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedAdipoRNA
Package Short Url http://bioconductor.org/packages/curatedAdipoRNA/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: