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PtH2O2lipids

DOI: 10.18129/B9.bioc.PtH2O2lipids    

This is the development version of PtH2O2lipids; for the stable release version, see PtH2O2lipids.

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Bioconductor version: Development (3.7)

Annotated HPLC-ESI-MS lipid data in positive ionization mode from an experiment in which cultures of the marine diatom Phaeodactylum tricornutum were treated with various concentrations of hydrogen peroxide (H2O2) to induce oxidative stress. The experiment is described in Graff van Creveld, et al., 2015, "Early perturbation in mitochondria redox homeostasis in response to environmental stress predicts cell fate in diatoms," ISME Journal 9:385-395. PtH2O2lipids consists of two objects: A CAMERA xsAnnotate object (ptH2O2lipids$xsAnnotate) and LOBSTAHS LOBSet object (ptH2O2lipids$xsAnnotate$LOBSet). The LOBSet includes putative compound assignments from the default LOBSTAHS database. Isomer annotation is recorded in three other LOBSet slots.

Author: Shiri Graff van Creveld [aut], Shilo Rosenwasser [aut], Daniella Schatz [aut], Ilan Koren [aut], Assaf Vardi [aut], James Collins [cre]

Maintainer: James Collins <james.r.collins at aya.yale.edu>

Citation (from within R, enter citation("PtH2O2lipids")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PtH2O2lipids")

Documentation

PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews CellCulture, ExperimentData, MassSpectrometryData, Phaeodactylum_tricornutum_data, ReproducibleResearch
Version 1.5.0
License MIT + file LICENSE
Depends R (>= 3.3), xcms, CAMERA, LOBSTAHS, methods, utils
Imports
LinkingTo
Suggests gplots, RColorBrewer, cluster, vegan, clustsig
SystemRequirements
Enhances
URL http://dx.doi.org/10.1038/ismej.2014.136 https://github.com/vanmooylipidomics/PtH2O2lipids http://www.whoi.edu/page.do?pid=133616&tid=282&cid=192529
BugReports https://github.com/vanmooylipidomics/PtH2O2lipids/issues/new
Depends On Me
Imports Me
Suggests Me LOBSTAHS
Build Report  

Package Archives

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Source Package PtH2O2lipids_1.5.0.tar.gz
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Package Short Url http://bioconductor.org/packages/PtH2O2lipids/
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