switchBox

DOI: 10.18129/B9.bioc.switchBox    

This is the development version of switchBox; for the stable release version, see switchBox.

Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm

Bioconductor version: Development (3.15)

The package offer different classifiers based on comparisons of pair of features (TSP), using various decision rules (e.g., majority wins principle).

Author: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Citation (from within R, enter citation("switchBox")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("switchBox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchBox")

 

PDF R Script Working with the switchBox package
PDF   Reference Manual

Details

biocViews Classification, Software, StatisticalMethod
Version 1.31.0
In Bioconductor since BioC 3.0 (R-3.1) (7 years)
License GPL-2
Depends R (>= 2.13.1), pROC, gplots
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me PDATK
Suggests Me multiclassPairs
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package switchBox_1.31.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra) switchBox_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/switchBox
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchBox
Package Short Url https://bioconductor.org/packages/switchBox/
Package Downloads Report Download Stats

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