To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqTools")

In most cases, you don't need to download the package archive at all.

seqTools

DOI: 10.18129/B9.bioc.seqTools    

This is the development version of seqTools; for the stable release version, see seqTools.

Analysis of nucleotide, sequence and quality content on fastq files

Bioconductor version: Development (3.6)

Analyze read length, phred scores and alphabet frequency and DNA k-mers on uncompressed and compressed fastq files.

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

Citation (from within R, enter citation("seqTools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqTools")

 

PDF R Script Introduction
PDF R Script seqTools_qual_report
PDF   Reference Manual
Text   NEWS

Details

biocViews QualityControl, Sequencing, Software
Version 1.11.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License Artistic-2.0
Depends methods, utils, zlibbioc
Imports
LinkingTo zlibbioc
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package seqTools_1.11.0.tar.gz
Windows Binary seqTools_1.11.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) seqTools_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/seqTools
Package Short Url http://bioconductor.org/packages/seqTools/
Package Downloads Report Download Stats

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