genomeIntervals

Operations on genomic intervals

Bioconductor version: Development (3.0)

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Author: Julien Gagneur <gagneur at genzentrum.lmu.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme

Maintainer: Julien Gagneur <gagneur at genzentrum.lmu.de>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("genomeIntervals")

Citation (from within R, enter citation("genomeIntervals")):

Documentation

PDF R Script Overview of the genomeIntervals package.
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Genetics, Infrastructure, Software
Version 1.21.1
In Bioconductor since BioC 2.4 (R-2.9)
License Artistic-2.0
Depends R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics(>= 0.10.0)
Imports
Suggests
System Requirements
URL
Depends On Me girafe
Imports Me easyRNASeq
Suggests Me RnaSeqTutorial

Package Downloads

Package Source genomeIntervals_1.21.1.tar.gz
Windows Binary genomeIntervals_1.21.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) genomeIntervals_1.21.1.tgz
Mac OS X 10.9 (Mavericks) genomeIntervals_1.21.1.tgz
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