dupRadar

This is the development version of dupRadar; for the stable release version, see dupRadar.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Assessment of duplication rates in RNA-Seq datasets

Bioconductor version: Development (3.24)

Duplication rate quality control for RNA-Seq datasets.

Author: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Citation (from within R, enter citation("dupRadar")):

Sergi Sayols, Holger Klein. dupRadar: Assessment of duplication rates in RNA-Seq datasets. doi:10.18129/B9.bioc.dupRadar, R package version 1.43.0, https://bioconductor.org/packages/dupRadar.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("dupRadar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dupRadar")

Using dupRadar	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Technology
Version	1.43.0
In Bioconductor since	BioC 3.2 (R-3.2) (11 years)
License	GPL-3
Depends	R (>= 3.2.0)
Imports	Rsubread (>= 1.14.1), KernSmooth
System Requirements
URL	https://www.bioconductor.org/packages/dupRadar https://ssayols.github.io/dupRadar/index.html

Suggests	BiocStyle, knitr, rmarkdown, AnnotationHub
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	dupRadar_1.43.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)	dupRadar_1.43.0.tgz
macOS Binary (sonoma-arm64)	dupRadar_1.43.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/dupRadar
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/dupRadar
Package Short Url	https://bioconductor.org/packages/dupRadar/
Package Downloads Report	Download Stats