To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellHTS2")

In most cases, you don't need to download the package archive at all.

cellHTS2

 

   

This is the development version of cellHTS2; for the stable release version, see cellHTS2.

Analysis of cell-based screens - revised version of cellHTS

Bioconductor version: Development (3.4)

This package provides tools for the analysis of high-throughput assays that were performed in microtitre plate formats (including but not limited to 384-well plates). The functionality includes data import and management, normalisation, quality assessment, replicate summarisation and statistical scoring. A webpage that provides a detailed graphical overview over the data and analysis results is produced. In our work, we have applied the package to RNAi screens on fly and human cells, and for screens of yeast libraries. See ?cellHTS2 for a brief introduction.

Author: Ligia Bras, Wolfgang Huber <whuber at embl.de>, Michael Boutros <m.boutros at dkfz.de>, Gregoire Pau <gpau at embl.de>, Florian Hahne <florian.hahne at novartis.com>

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("cellHTS2")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellHTS2")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellHTS2")

 

PDF cellhts2.pdf
PDF cellhts2Complete.pdf
PDF twoChannels.pdf
PDF twoWay.pdf
PDF   Reference Manual

Details

biocViews CellBasedAssays, Preprocessing, Software, Visualization
Version 2.37.0
In Bioconductor since BioC 2.1 (R-2.6) (8.5 years)
License Artistic-2.0
Depends R (>= 2.10), RColorBrewer, Biobase, methods, genefilter, splots, vsn, hwriter, locfit, grid
Imports prada, GSEABase, Category, stats4
LinkingTo
Suggests ggplot2
SystemRequirements
Enhances
URL http://www.dkfz.de/signaling http://www.ebi.ac.uk/huber
Depends On Me coRNAi, imageHTS, staRank
Imports Me gespeR, HTSanalyzeR, RNAinteract
Suggests Me bioassayR
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cellHTS2_2.37.0.tar.gz
Windows Binary cellHTS2_2.37.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/cellHTS2
Package Short Url http://bioconductor.org/packages/cellHTS2/
Package Downloads Report Download Stats

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