To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")

In most cases, you don't need to download the package archive at all.

arrayQualityMetrics

 

   

This is the development version of arrayQualityMetrics; for the stable release version, see arrayQualityMetrics.

Quality metrics report for microarray data sets

Bioconductor version: Development (3.4)

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Audrey Kauffmann <akauffmann.bioinfo at gmail.com>

Citation (from within R, enter citation("arrayQualityMetrics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("arrayQualityMetrics")

 

PDF R Script Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output
PDF R Script Introduction: microarray quality assessment with arrayQualityMetrics
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel
Version 3.29.2
In Bioconductor since BioC 2.1 (R-2.6) (8.5 years)
License LGPL (>= 2)
Depends
Imports affy, affyPLM(>= 1.27.3), beadarray, Biobase, Cairo (>= 1.4-6), genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, SVGAnnotation (>= 0.9-0), utils, vsn(>= 3.23.3), XML
LinkingTo
Suggests ALLMLL, CCl4, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me EGAD
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source arrayQualityMetrics_3.29.2.tar.gz
Windows Binary arrayQualityMetrics_3.29.2.zip
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/arrayQualityMetrics
Package Short Url http://bioconductor.org/packages/arrayQualityMetrics/
Package Downloads Report Download Stats

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