Prostar

This is the development version of Prostar; for the stable release version, see Prostar.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Provides a GUI for DAPAR

Bioconductor version: Development (3.24)

This package provides a GUI interface for the DAPAR package. The package Prostar (Proteomics statistical analysis with R) is a Bioconductor distributed R package which provides all the necessary functions to analyze quantitative data from label-free proteomics experiments. Contrarily to most other similar R packages, it is endowed with rich and user-friendly graphical interfaces, so that no programming skill is required.

Author: Thomas Burger [aut], Florence Combes [aut], Samuel Wieczorek [cre, aut], Manon Gaudin [ctb]

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Citation (from within R, enter citation("Prostar")):

Thomas Burger, Florence Combes, Samuel Wieczorek. Prostar: Provides a GUI for DAPAR. doi:10.18129/B9.bioc.Prostar, R package version 1.45.0, https://bioconductor.org/packages/Prostar.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("Prostar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Prostar")

Prostar User Manual	HTML	R Script
Reference Manual	PDF
README	Text
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GUI, MassSpectrometry, Normalization, Preprocessing, Proteomics, Software
Version	1.45.0
In Bioconductor since	BioC 3.2 (R-3.2) (11 years)
License	Artistic-2.0
Depends	R (>= 4.5.0)
Imports	DAPAR (>= 1.35.1), DAPARdata (>= 1.30.0), rhandsontable, data.table, shiny, shinyBS, shinyAce, plotly, htmlwidgets, webshot, shinythemes, later, shinycssloaders, future, promises, shinyjqui, tibble, ggplot2, gplots, shinyjs, vioplot, Biobase, DT, R.utils, RColorBrewer, XML, colourpicker, gtools, markdown, rclipboard, sass, shinyTree, shinyWidgets
System Requirements
URL	http://www.prostar-proteomics.org/
Bug Reports	https://github.com/edyp-lab/Prostar/issues

Suggests	BiocStyle, BiocManager, testthat, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Prostar_1.45.0.tar.gz
Windows Binary (x86_64)	Prostar_1.45.0.zip
macOS Binary (big-sur-x86_64)	Prostar_1.45.0.tgz
macOS Binary (sonoma-arm64)	Prostar_1.45.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Prostar
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Prostar
Package Short Url	https://bioconductor.org/packages/Prostar/
Package Downloads Report	Download Stats