OPWeight

DOI: 10.18129/B9.bioc.OPWeight    

This is the development version of OPWeight; for the stable release version, see OPWeight.

Optimal p-value weighting with independent information

Bioconductor version: Development (3.15)

This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.

Author: Mohamad Hasan <shakilmohamad7 at gmail.com>, Paul Schliekelman <shakilmohamad7 at gmail.com>

Maintainer: Mohamad Hasan <shakilmohamad7 at gmail.com>

Citation (from within R, enter citation("OPWeight")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("OPWeight")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews BiomedicalInformatics, ImmunoOncology, MultipleComparison, RNASeq, Regression, SNP, Software
Version 1.17.0
In Bioconductor since BioC 3.6 (R-3.4) (4 years)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports graphics, qvalue, MASS, tibble, stats
LinkingTo
Suggests airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat
SystemRequirements
Enhances
URL https://github.com/mshasan/OPWeight
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/OPWeight
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OPWeight
Package Short Url https://bioconductor.org/packages/OPWeight/
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