To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OPWeight")

In most cases, you don't need to download the package archive at all.

OPWeight

DOI: 10.18129/B9.bioc.OPWeight    

This is the development version of OPWeight; for the stable release version, see OPWeight.

Optimal p-value weighting with independent information

Bioconductor version: Development (3.7)

This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.

Author: Mohamad Hasan [aut, cre], Paul Schliekelman [aut]

Maintainer: Mohamad Hasan <shakilmohamad7 at gmail.com>

Citation (from within R, enter citation("OPWeight")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OPWeight")

Documentation

HTML R Script Introduction to OPWeight
PDF   Reference Manual
Text   NEWS

Details

biocViews BiomedicalInformatics, MultipleComparison, RNASeq, Regression, SNP, Software
Version 1.1.0
License Artistic-2.0
Depends R (>= 3.4.0)
Imports graphics, qvalue, MASS, tibble, stats
LinkingTo
Suggests airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat
SystemRequirements
Enhances
URL https://github.com/mshasan/OPWeight
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OPWeight_1.1.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) OPWeight_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OPWeight
Package Short Url http://bioconductor.org/packages/OPWeight/
Package Downloads Report Download Stats

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