MouseFM

DOI: 10.18129/B9.bioc.MouseFM    

This is the development version of MouseFM; for the stable release version, see MouseFM.

In-silico methods for genetic finemapping in inbred mice

Bioconductor version: Development (3.13)

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Author: Matthias Munz <matthias.munz at gmx.de>, Inken Wohlers <inken.wohlers at uni-luebeck.de.de>, Hauke Busch <hauke.busch at uni-luebeck.de.de>

Maintainer: Matthias Munz <matthias.munz at gmx.de>

Citation (from within R, enter citation("MouseFM")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseFM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation
Version 1.1.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends R (>= 4.0.0)
Imports httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, GenomeInfoDb, methods, biomaRt, stats, IRanges
LinkingTo
Suggests BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/matmu/MouseFM/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/MouseFM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseFM
Package Short Url https://bioconductor.org/packages/MouseFM/
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